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Properties
| Property Name | Value |
|---|
| Product | hemimethylated dna binding domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100017g42.352.mrna |
| Orig protein id | gnl|cribi|Naga_100017g42.352 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:570040..572435 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna851 ID=rna851|Name=rna851|organism=Nannochloropsis gaditana|type=mRNA|length=1905bp
ATAGTCACGTGAAAAAATCGGCGTAACAAATGCCCCTCGGCCCCTACGGC
CCACCTCCTCTGCTTCGATCTCGCGTCGACCCCGTCGTCACCCGGAACGC
CTGGCCGTGTCCACGAGGTGTAGCCCACTTATTCCGTCCCTTTCCTATGT
TTGACAGGCTATGAGGGGACGGCTGGCACGAGCTGGAACATCGCACGCTG
CCCTCGCCTCGGCTTGTGCGTGTCTGGCGCTACACAGGCAACCCCCCCTG
CTCGAGGCGGGCACGGGATTATCGAGTGACGACGATGGTTCCGCTAGTCC
ATCCGCGCAAGGTTCACCTGAAGCTCGAGGTACACGCCCAAGACGCAACA
TGGCGCGGCGGCGGACCACGAGCGTCGTTCCCGTGGGAGCAGAGGAACTG
GAATGGACGCCGGAGGGGGGGGAAGCGCCGTGGCTAGGCAGAGCTCCAGC
ACGTCTCGAAACAGAGGTGCCCAAGTGAGGGACGACGAGGGCGTGGGACG
TTTACATCGCAGGAATTCCAAGGGAAAAGAATGGCAAAAGCGTTTGAAGG
AAGCAGCGGAAGGGGGGAGCACGGAGGGCACGGCAGCTACCGACGCTGCC
ACAGCGGCGCGCATGCTGAGGCAATTACAAGCATGGGAGACCCGGCCGCC
AGGTCCGTGCGACAAATACAACTCTATCGCGTCCCGCTTCTTGACATGGC
AAACGCGTCGGAGGGAGTGCAATCTGGCTCCGGGAAATTGCGTGTTTATG
GGCCGGAGTTTGACGGGGTGGTGCGTCCCGGAGGAAGAGGCGGCCCTGTA
CGAGAGCGTGATGCCGCGACGGAAATGGAGCGAGGAGGAGGAGGAGGAGG
GGCAAGGGGAGGGGAAGGGGGGGAAATCGAGGACGGAGGCGAGGCGGACT
TCTTCCCCCCCAACGACCCCGAGGGCCCCATGGTGGAGACGGAGCTCCTG
CAGTCTCTGGTGACCATCATCCGGCAGGAGGGCATCGAGCAGCCTGTGCG
CCTCCTCATCACAGGGAGTCTGGCGGAGGCCATGACAGACTCGCTCAGGG
ACGGGCAGTCTGGCACGCAGGAGCTGGCGAAAGAGCTGGTCATGGAGGTC
CTGGCAGATCCGAATTCGGCCGCGGCGGTGCAGCACCTGCTGATGAGGCC
CGAGCTGGCGGCCTCCCTCCGGGGGCTGGTGCACCCCCTTCTCCTTCTCC
CCTTCACCAAGCGAGAGTCCCATCGCCTCCTCAAGCAACAGCTGGACTGG
CTCATGGTCCGGAACCCAGCCACGGAGCAGTCTCTCGGGGGCCTGGGGCA
GCTCTTGCTTCGGCTGGCCTCCACGCGCGCGGCCATCGCCTCCCTCCTCT
CCTGGTCCCTCTCCCCCTCGGGGCCCCTCCCTCCCCTCGTCACCGACCTA
ACCAGCGACCGGCTCGTCCCCCTCCTGGCGCCCGCCACCACCGGGGCCTT
GACGGGCGCCGTTCACGAGGCTCTGGAGGACGAGTACATCCGGGAGCTCG
CAAAAGACACCATGAAAGGCTTGCTCCTGCGCGTTGCTAAAATGCACGCC
GCCGCCGCCGCCGCAGCCGCAGAGGCGAGACGGCGGGAAGACGCAGAGAG
CAGGGAGGTTGCGGTGAAGAGGGAGGAGGAGGAAGAGGGGGAGGGCGGGC
ACGGGGCAGAGACAGAGGGAGGGGGAGGGCGTGCTGAGGATCCTGAAGGG
GAGGACGCAGGAGAGCGCGGCCCTTTAAAAGGGGATGAGAGGGGTAAGGA
GGTCCTCGACCTTGGGAGGAGATGATGCCTGCGTTGGGAATAGACGGGAC
AGGGGAGTGAGCGAGGCCCCGGCGATGGAGAGAGGTCATCGAGTGTTTCG
GTCCACACGTGAGACTTGAGAAGGGTTGGTCGCAGACAAAGGGCAAATGC
ACTGT back to topprotein sequence of rna851 >rna851-protein ID=rna851-protein|Name=rna851|organism=Nannochloropsis gaditana|type=polypeptide|length=463bp
MMPPPPSSASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAAL
QLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRF
TRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDV
SRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHA
LESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSS
TFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGN
LERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQ
ILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYR
GVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRSSPPLRRWWFCP
KIRWRQRPRRKVR back to topmRNA from alignment at CM002456.1:570040..572435+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna851 ID=rna851|Name=rna851|organism=Nannochloropsis gaditana|type=mRNA|length=2396bp|location=Sequence derived from alignment at CM002456.1:570040..572435+ (Nannochloropsis gaditana)
CCTTGTCCCCACAAACAGGCaggcccccttctccttgttccGTCGTCAAC
CTGGTGGATTCCGTTCTTAGCTCCGGACATAAGAAGTTCCACCTCACCGG
GTGGGCTCCCTCCAACTGCCCTTCAACCCCCTCAATCCTCGTATACCCGC
CCTTCACATTGGCCAAAGGATCATgatgcctccgcccccatcaTCTGCAA
GCACGTCGCGTTCTGTTGTGTTGTCCCTGTACCGAGCGTGCTTGCGATGG
ACTCAAATTCCTCTGGTGGTAAAAAGCAAATTTATCGCGGGCGACCACCT
CCCCTCTACTCTCGCTGCCCTTCAGctttcccctcgtctcctgACAAATA
AGGAGGGTATTGAAGAAGCCATTCGCATGCTATTTCGAGCACACGCCAAA
GAAATGGATGCCAAGGTGGTCTCGGAAAAAATGAATCTTGCTGTTGACGG
GTTGCAGTATCTGAATCGGTTTACTCGCGTGTTGAGAGACGCGGAGTCCC
GACGGGAGGCGAATCGGGCCCGGGACGGCCTGACCTTTCGAGTAGGGCAG
GTTGTGAGGCATAAACTGTACAACTACAGGGCCGCAATTGTTGGGTGGGA
CCGGCGCCCTGCCATTGACGTGAGCCGGTGGGAAGGCGTGCTCGCCTCGT
CCCTGGGCGTGAACCAACCCTTCTACCACTGCATCCCTGACAGCAACGAC
ACCTTGCATTTCCTTGGCGGCGTCCGGAAGCTCATGTACGTGGCGCAGGA
AAACCTGGAACTCTGCCACGCTTTGGAAAGCCGAATTAACTCGGACGTCA
TTCCTCAGGCCTTCGAATGCTTCGACCCTAGCACCCAATCCTTCCTACCA
ACAGAGCGCATCACATGGCAGTACCCGGCAGATCACTTGGTCCCCCgtgc
ctcccccacctctccctctagCACCTTCAAGCCACGCACCTCAGGATTCA
GCAGGAAGTTCCGGGCCTCGGTGCAGCGGGCCAAGGCCGTAGACGCCTCC
CAGCGTGTACGGGCGGAGTTCGCTCAGCTGGCAGACCGCATTGGGCAATC
GCTCGAAAGCCGGTTCGGCAATCTGGAGCGCTTTCATGCCCATGAGCCTG
CGGGGATCCTCCTATCTTTGCTCGCTCGATTGAAAGAGATAgacgcctcc
tttcccccctctgttccctctctctccctcccatccacgGCCACTGCCAG
CCCCTGCAGCAGCCTCGAGCAGATACTCCCTGCCTATCACACTCTGGCCG
CGTTCCGagacctcctcgccctctgccaAGACGTGAGCAGCGCCCGTCGG
TTCGCGAGAGACCGGGACGGTGTTCTCTACCAAGTCGGGCAGGCGGTGCG
GCACGCAACGCTTGGCTACCGCGGTGTTGTCTGTGGGTGGGAGCGGTTTC
CCAAACGGCAGCTCCCGTCCGATCAGCCGGACCTGTCGGCAGGACACCCG
CACTACCGGGTCATTGTCAACGACGAGGACCggcgctcttccccccccct
ccggcgttGGTGGTTTTGCCCCAAAATACGCTGGCGGCAACGCCCGCGGA
GGAAAGTGCGGTGATCAGCCCTCTCATTCCCGAGAACTTCCTTTACTACG
ATCCTGTGGCCGCGCGTTACCGGCCAAACGGGACGCTGGAGTTCAAGTAT
TCCATCGGGAGATCGCGTGAGGGTGAAAAGGActacggagggggagatga
ggaggcaAGCATGGTGGAGGTCGTCCATCGCGTGCTGACCCAAGTCCTGG
TGCAGGCACGGAGCAAAGGGCCCCGGCGGGCGGGTATGAAGGCAGATCTA
TTCATGCTCTTGCAGGGGGCCATGCGGAAAGAGGACGCTGACGTGGCTGA
GTCCACTCTTTGGTCCCTGTGGTTGGCCCACACCGACGCTGACGTCAGCG
CCTTTATGGACGATGGCATCCAATTCATGCTGCGAGGCAAGTATGACTTG
GCGATAACCCGCTTCGATgccgccctggccttggATCCCGGTTTTTCAGA
GGCATACAACAAACGGAGCACTGCCAACTTCCTATCCGGCAGGTATGAGG
AGGCTAAGAAAGATGCAGTCGTAACATTAAACCAGGAGCCCTCGCACTGG
GGCGCGCTTTTAGGGCGAGGATTGATCGACTACGAGATAGGACAGAAGCT
TCAAGCAATCAAAGCCTTTCGCGCCACACTCAGGATCCACCCCTGGAGCA
CTAATGTGGGCACTACGCTTTTTCACACGCGCAAGCAGctggagacggag
gaagtgATGACGATGATGGAGCCTCTGTGATGAGGGTTCGCGGATGACAA
GAAATCAAAACTCGTGTGAAAAGATAGGTCTAGAACAAGAACTGTAATTA
TACGAGATTACGGAAACAGACAAAAAATCATTTGCCGTTCGTATAC back to topCoding sequence (CDS) from alignment at CM002456.1:570040..572435+ >rna851 ID=rna851|Name=rna851|organism=Nannochloropsis gaditana|type=CDS|length=1392bp|location=Sequence derived from alignment at CM002456.1:570040..572435+ (Nannochloropsis gaditana)
ATgatgcctccgcccccatcaTCTGCAAGCACGTCGCGTTCTGTTGTGTT
GTCCCTGTACCGAGCGTGCTTGCGATGGACTCAAATTCCTCTGGTGGTAA
AAAGCAAATTTATCGCGGGCGACCACCTCCCCTCTACTCTCGCTGCCCTT
CAGctttcccctcgtctcctgACAAATAAGGAGGGTATTGAAGAAGCCAT
TCGCATGCTATTTCGAGCACACGCCAAAGAAATGGATGCCAAGGTGGTCT
CGGAAAAAATGAATCTTGCTGTTGACGGGTTGCAGTATCTGAATCGGTTT
ACTCGCGTGTTGAGAGACGCGGAGTCCCGACGGGAGGCGAATCGGGCCCG
GGACGGCCTGACCTTTCGAGTAGGGCAGGTTGTGAGGCATAAACTGTACA
ACTACAGGGCCGCAATTGTTGGGTGGGACCGGCGCCCTGCCATTGACGTG
AGCCGGTGGGAAGGCGTGCTCGCCTCGTCCCTGGGCGTGAACCAACCCTT
CTACCACTGCATCCCTGACAGCAACGACACCTTGCATTTCCTTGGCGGCG
TCCGGAAGCTCATGTACGTGGCGCAGGAAAACCTGGAACTCTGCCACGCT
TTGGAAAGCCGAATTAACTCGGACGTCATTCCTCAGGCCTTCGAATGCTT
CGACCCTAGCACCCAATCCTTCCTACCAACAGAGCGCATCACATGGCAGT
ACCCGGCAGATCACTTGGTCCCCCgtgcctcccccacctctccctctagC
ACCTTCAAGCCACGCACCTCAGGATTCAGCAGGAAGTTCCGGGCCTCGGT
GCAGCGGGCCAAGGCCGTAGACGCCTCCCAGCGTGTACGGGCGGAGTTCG
CTCAGCTGGCAGACCGCATTGGGCAATCGCTCGAAAGCCGGTTCGGCAAT
CTGGAGCGCTTTCATGCCCATGAGCCTGCGGGGATCCTCCTATCTTTGCT
CGCTCGATTGAAAGAGATAgacgcctcctttcccccctctgttccctctc
tctccctcccatccacgGCCACTGCCAGCCCCTGCAGCAGCCTCGAGCAG
ATACTCCCTGCCTATCACACTCTGGCCGCGTTCCGagacctcctcgccct
ctgccaAGACGTGAGCAGCGCCCGTCGGTTCGCGAGAGACCGGGACGGTG
TTCTCTACCAAGTCGGGCAGGCGGTGCGGCACGCAACGCTTGGCTACCGC
GGTGTTGTCTGTGGGTGGGAGCGGTTTCCCAAACGGCAGCTCCCGTCCGA
TCAGCCGGACCTGTCGGCAGGACACCCGCACTACCGGGTCATTGTCAACG
ACGAGGACCggcgctcttccccccccctccggcgttGGTGGTTTTGCCCC
AAAATACGCTGGCGGCAACGCCCGCGGAGGAAAGTGCGGTGA back to top
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