EWM29854.1, cds851 (CDS) Nannochloropsis gaditana

Overview
NameEWM29854.1
Unique Namecds851
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:570212..571603 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29854.1
Producthemimethylated dna binding domain-containing protein
Orig transcript idgnl|cribi|Naga_100017g42.352.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:570212..571603 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR011722Hemimethylated_DNA-bd_dom
Homology
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|585112435|gb|EWM29854.1| (hemimethylated dna binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 463/463 (100.00%), Postives = 463/463 (100.00%), Query Frame = 0
Query:    1 MMPPPPSSASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRSSPPLRRWWFCPKIRWRQRPRRKVR 463
            MMPPPPSSASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRSSPPLRRWWFCPKIRWRQRPRRKVR
Sbjct:    1 MMPPPPSSASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRSSPPLRRWWFCPKIRWRQRPRRKVR 463          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|922854863|gb|KOO23364.1| (f-box only protein 21, partial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 145.206 bits (365), Expect = 1.530e-36
Identity = 86/236 (36.44%), Postives = 125/236 (52.97%), Query Frame = 0
Query:   10 STSRSVVLSLYRACLRWTQIPLVVKSKF-IAGDHLPSTLAAL--QLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQA-FECFDPSTQSFLPTERITWQYPADHLVP 241
            +  RSV LSLYRA  R T  P V  S+F +   +LP  ++AL  +L P   T++ G++  +R  +R     +D          A   L+ L        +   RR     R G+ +++G+V+RHK++ +RA ++GWDRRPA+DVS W+GV     G  QPFY  +PD  D +  LGG R + YVAQENLE       RI    +  A F  FD +   F+P+E++ + YP   L P
Sbjct:    5 AAERSVTLSLYRAMWRSTMAPAVRHSRFTVPLGNLPDNVSALARRLKP---TDQRGLQALLRAAWRDEGGTLDG---------AFQALRALGELHSECEETVKRRVDKADRRGIHYQIGEVLRHKVFGFRAVVIGWDRRPAVDVSSWDGVQNLPSGTEQPFYKMLPDLADCIEHLGGPRDVRYVAQENLERVPLSHRRILHPSLSAAIFPAFDGTHGRFVPSEQLAFAYPGSELEP 228          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|551609240|ref|XP_005785839.1| (hypothetical protein EMIHUDRAFT_111823 [Emiliania huxleyi CCMP1516] >gi|485639050|gb|EOD33410.1| hypothetical protein EMIHUDRAFT_111823 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 128.257 bits (321), Expect = 5.258e-28
Identity = 79/241 (32.78%), Postives = 124/241 (51.45%), Query Frame = 0
Query:   14 SVVLSLYRACLRWTQIPLVVKSKFIAG--DHLPSTL--AALQL-SPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVI-------------PQAFECFDPSTQSFLPTERITWQYPA 236
            SV  +LYR+  RW + P V  +   A   D LP+++  AA +L SPR      G  E +R+ +R  A        + +++ A   L+ L      L   + +R +N  R  +  R+G+VVRH  Y YR  ++GWDR+  +DVS W+G+  SS G +QPFY  +PD  D    LGG R++ YVAQENLE      +R++   +               AF  +D +  +F+P++ + ++YP 
Sbjct:    2 SVAQALYRSMWRWVRSPAVRCNPHFALPLDKLPASVVRAAERLESPR---GAAGSRELLRLAWREAASTSGEAATAAELDDAFRVLRVLGELGEELEALQKKRASNAWRVDVEMRIGEVVRHSQYGYRGVVLGWDRKAEVDVSGWDGLRKSSRGGDQPFYRLLPDYTDCAELLGGPREVKYVAQENLERLPPRYTRVHHPALLSPGASPPVRRDDHGAFLRYDATAAAFVPSDELAYEYPG 239          

HSP 2 Score: 117.087 bits (292), Expect = 2.588e-24
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 0
Query:  109 SRREANRARDGLTFRVGQ-----------------VVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHL 239
            + R A   R G+TF VGQ                 V+RH+ + +RAA++GW+RRP +DVS W+GV     G +QPFY  +PD  D +  LGG R + YVAQENLE     E  I+ +++P  F+ +D ++ +FLP +++ + Y  D L
Sbjct:  437 AERAAKADRGGITFGVGQALRSSTSHTTTTVFADHVLRHRKFGFRAAVLGWERRPEVDVSGWDGVQGLPSGADQPFYRMVPDMGDCVGLLGGPRGVRYVAQENLEELPLSERAISHELLPHFFDGYDAASGTFLPVQQLRYWYSRDPL 584          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|760448237|ref|XP_011401187.1| (F-box only protein 21 [Auxenochlorella protothecoides] >gi|675355734|gb|KFM28174.1| F-box only protein 21 [Auxenochlorella protothecoides])

HSP 1 Score: 102.064 bits (253), Expect = 5.088e-21
Identity = 68/245 (27.76%), Postives = 114/245 (46.53%), Query Frame = 0
Query:   11 TSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYL-NRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVN--QPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTF 252
            T R ++L  YR+ LRW +    V  +   GD L   L A  + P  L +   + +  R  F  + K++  +   E ++ A+D L+ L + +   +    + R     R G+ + +G V  H  + YR  + GWDR    D + W    A+++GV   QPFYH +PD  D +   GGVR   YVAQ+N  +     +R+    +   F+  D  T  ++P+ ++ ++YP D+      P    S  
Sbjct:    2 TDRRLILVAYRSVLRWARDNAAVPFQLRRGDVL---LLAPGVVPTTLQDAAAVSQIARAAFHLN-KDLKPEEAGEAVDRALDALRLLHDDYGGAIARMRALRGDRADRSGVAWALGTVFAHAQHGYRGVVFGWDRECERD-AEW----AAAMGVRPRQPFYHVLPDEGDCVRLFGGVRVSKYVAQDN--VVPLAGARVMHRALDNYFDGHDAGTGRYIPSRKLQFEYPDDYRALTPQPVGADSNL 235          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|397638869|gb|EJK73261.1| (hypothetical protein THAOC_05129 [Thalassiosira oceanica])

HSP 1 Score: 92.4337 bits (228), Expect = 3.024e-16
Identity = 45/129 (34.88%), Postives = 71/129 (55.04%), Query Frame = 0
Query:  109 SRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALES---RINSDVIPQAFECFDPSTQSFLPTERITWQY 234
            +RR   R +  + + +GQ+VRHKLY +R  IVG+D +P IDVS W+G+        +PFYH  PD ND     GG R   Y  ++NLE   +       + +D + +A   +DP T S+ P++ + + +
Sbjct:  425 ARRVNKRVKPKIEYSLGQIVRHKLYGFRGVIVGFDEKPRIDVSNWDGLQGVEDASEKPFYHIRPDINDCTKAFGGPRDFRYCCEDNLEFISSYTGGPLELATD-LNEAEWRWDPVTASYTPSQELKFMF 552          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|552840745|ref|XP_005850129.1| (hypothetical protein CHLNCDRAFT_142233 [Chlorella variabilis] >gi|307109790|gb|EFN58027.1| hypothetical protein CHLNCDRAFT_142233 [Chlorella variabilis])

HSP 1 Score: 87.0409 bits (214), Expect = 1.167e-15
Identity = 67/249 (26.91%), Postives = 119/249 (47.79%), Query Frame = 0
Query:    8 SASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGD-HLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARD---GLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTF 252
            +    + + L++YRA L+W++    V      GD H  +   +   +   L +   I    R  F A  ++++ +   E ++  +DG++ L+  T   +  +  RE  R R+   G+ F VGQV  HK Y +R  + GWDR    D   W+  + +    +QPFY+C+PD  D +   GGVR   YVAQ+N++    ++SRI    +   F  +  S   ++P  ++ ++YP  +    A+P    +  
Sbjct:    2 AGRGDKRLALAVYRAMLKWSRTNADVPFSLRPGDVHALAPHGSAAAAALSLQDAAAIPPIARAEFDA-CRQLEGEEAEEALDRGIDGVRLLH--TVYSQQVQGMREVRRDREDKTGVKFAVGQVFIHKKYGFRGVVYGWDRECQRD-EDWQRAM-NVQHPHQPFYYCLPDETDCVRLFGGVRITKYVAQDNIQ---PIDSRIVHRALDNYFSSYSASRSRYIPCRKLQYEYPDRYEAEDAAPVGDDANL 242          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|545370476|ref|XP_005649874.1| (hypothetical protein COCSUDRAFT_61552 [Coccomyxa subellipsoidea C-169] >gi|384251853|gb|EIE25330.1| hypothetical protein COCSUDRAFT_61552 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 80.4925 bits (197), Expect = 1.561e-13
Identity = 45/160 (28.12%), Postives = 77/160 (48.12%), Query Frame = 0
Query:   80 AKVVSEKMNLAVDGLQYLN-RFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADH 238
             + +S   +  ++ +Q L+  +  +L    + RE    R  + F +G V  HK + Y+  + GWD+    D +    V A      QPFYH +PD +D     G VR   YVAQ+N+E    +  R+N   I   F+ + P    ++P  R+ ++YP ++
Sbjct:   37 GEELSNAFDQGLEAVQLLHTEYADLLSRLRTSREVRTDRSRVAFSLGTVFIHKKFGYKGVVYGWDQECERDPAWAAAVHADP---TQPFYHVLPDEDDCQRIFGAVRISKYVAQDNMEPL-LVPHRVNHRAIAHYFDSYSPDLLRYVPNSRLQYEYPDNY 192          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|1210511526|dbj|GAX29340.1| (hypothetical protein FisN_16Hh225 [Fistulifera solaris])

HSP 1 Score: 80.1073 bits (196), Expect = 2.624e-12
Identity = 92/362 (25.41%), Postives = 152/362 (41.99%), Query Frame = 0
Query:   57 LTNKEGIEEAIRMLFRAHAK-EMDAKVVSEKMNLAVDGLQYLNRFT--RVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQP--FYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPAD---HLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFP 410
            +T+   +    R+LFR +A   ++     ++++ A   L+ LN+ T   +   A+ RR     R G+ F VGQVVRH+   +R  IVGW++    + S     L +    ++P   YH + D+ D  H +    K + VA +  +  + L  RI  +++   F+ F+    +F+P   + + YP D   H+ PR  P        P     +++    VQ             +FA   +RI +  +   G L+  H        L+ LA          P+   LS            +  +      L AF D L   QD  + R+  R    + ++VG  +RH   GYRGVV GW+  P
Sbjct:   92 ITHSSDLRNFFRVLFRINAYLPVEETYQKKRIDNAFQALKSLNQLTSETIAPFAQQRR---IDRTGVQFSVGQVVRHREKRWRGVIVGWEK---ANHSAPLSSLTTKQYSSEPTVTYHVLVDAGDA-HQMNRTTKGITVAFQIEQETNPLLQRIRHEMVDDMFDGFEQG--AFVPPPLLAYTYPNDEISHIPPRNLP--------PDIENLAKQMVQGVQ-------------DFANELERIME--QQAGGPLDGLH--------LTALAA-----GHVAPTKVELSFVQQVIQESVHPITMLALHVRDLIAFVDQL---QDAFTHRQ--RPHPPIHFRVGNVIRHKIFGYRGVVTGWDDRP 403          

HSP 2 Score: 79.7221 bits (195), Expect = 3.275e-12
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 0
Query:  100 FTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLA---SSLGVNQ-PFYHCIPDSNDTLHFLGGVRK----LMYVAQENLELCHAL 201
            F   L+DA + R+  R    + FRVG V+RHK++ YR  + GWD RP +DVSRW+G+ A        N+ PFYH +     T H   G+      + YV QENLE+C+ +
Sbjct:  359 FVDQLQDAFTHRQ--RPHPPIHFRVGNVIRHKIFGYRGVVTGWDDRPVVDVSRWDGIQALIQQGKDPNEMPFYHVV---RHTEHHERGLDTPGAAMRYVCQENLEVCYEI 463          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|1210531845|dbj|GAX09532.1| (hypothetical protein FisN_16Lh225 [Fistulifera solaris])

HSP 1 Score: 77.0258 bits (188), Expect = 2.715e-11
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 0
Query:  100 FTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLA----SSLGVNQPFYHCIPDSNDTLHFLGGVRK----LMYVAQENLELCHAL 201
            F   L+DA + R   R    + FRVG V+RHK++ YR  + GWD RP +DVSRW+G+ A           PFYH +     T H   G+      + YV QENLE+C+ +
Sbjct:  360 FVDQLQDAFTHRL--RQHPPIHFRVGDVIRHKVFGYRGVVTGWDDRPVVDVSRWDGIQALIQQGKDPNEMPFYHVV---RHTEHHERGLDTPGAAMRYVCQENLEVCYEV 464          
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|971512887|dbj|GAQ85319.1| (hypothetical protein KFL_002290100 [Klebsormidium nitens])

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-9
Identity = 68/239 (28.45%), Postives = 108/239 (45.19%), Query Frame = 0
Query:    9 ASTSRSVVLSLYRACLRWTQIPLVVKS-KFIAGDHLPSTLAAL----QLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVD-GLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWD---RRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALE--SRINSDVIPQAFECFDPSTQSFLPTERITWQYPA 236
            A + RSVVL LYR+ L +T+   +  +   +      +TL  +      +     + +G  + IR  FR   +  D    S  +  A+D GL+ L  F   LR   S RE          +VG V++H+ Y Y+  I GWD   +RP   V +   V     G NQ FYH +PD +D     G  R  MYVAQ+N+     ++  SR  S + P+ +         ++P++ + + +P 
Sbjct:    2 AMSERSVVLGLYRSLLAYTKSASLRHAWTHVVPPSFKATLCGVNDVGHCAKFATADAKGAMDLIRSSFR---QSQDLPAGSPTIVTAIDRGLEALRVFN-ALRAVVSLREERLDSSVARHQVGTVIQHRRYGYKGLIFGWDPTCQRPKSWVEK-NRVDDLEHGANQVFYHVLPDESD-----GQPRNEMYVAQDNIVEMPLVQIYSRSQSRLFPKGYS---KGLDRYIPSQTLRYIFPG 227          
The following BLAST results are available for this feature:
BLAST of EWM29854.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112435|gb|EWM29854.1|0.000e+0100.00hemimethylated dna binding domain-containing prote... [more]
gi|922854863|gb|KOO23364.1|1.530e-3636.44f-box only protein 21, partial [Chrysochromulina s... [more]
gi|551609240|ref|XP_005785839.1|5.258e-2832.78hypothetical protein EMIHUDRAFT_111823 [Emiliania ... [more]
gi|760448237|ref|XP_011401187.1|5.088e-2127.76F-box only protein 21 [Auxenochlorella protothecoi... [more]
gi|397638869|gb|EJK73261.1|3.024e-1634.88hypothetical protein THAOC_05129 [Thalassiosira oc... [more]
gi|552840745|ref|XP_005850129.1|1.167e-1526.91hypothetical protein CHLNCDRAFT_142233 [Chlorella ... [more]
gi|545370476|ref|XP_005649874.1|1.561e-1328.13hypothetical protein COCSUDRAFT_61552 [Coccomyxa s... [more]
gi|1210511526|dbj|GAX29340.1|2.624e-1225.41hypothetical protein FisN_16Hh225 [Fistulifera sol... [more]
gi|1210531845|dbj|GAX09532.1|2.715e-1139.09hypothetical protein FisN_16Lh225 [Fistulifera sol... [more]
gi|971512887|dbj|GAQ85319.1|2.399e-928.45hypothetical protein KFL_002290100 [Klebsormidium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna851rna851Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications