EWM29854.1, cds851 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|585112435|gb|EWM29854.1| (hemimethylated dna binding domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0 Identity = 463/463 (100.00%), Postives = 463/463 (100.00%), Query Frame = 0
Query: 1 MMPPPPSSASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRSSPPLRRWWFCPKIRWRQRPRRKVR 463
MMPPPPSSASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRSSPPLRRWWFCPKIRWRQRPRRKVR
Sbjct: 1 MMPPPPSSASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRSSPPLRRWWFCPKIRWRQRPRRKVR 463
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|922854863|gb|KOO23364.1| (f-box only protein 21, partial [Chrysochromulina sp. CCMP291]) HSP 1 Score: 145.206 bits (365), Expect = 1.530e-36 Identity = 86/236 (36.44%), Postives = 125/236 (52.97%), Query Frame = 0
Query: 10 STSRSVVLSLYRACLRWTQIPLVVKSKF-IAGDHLPSTLAAL--QLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQA-FECFDPSTQSFLPTERITWQYPADHLVP 241
+ RSV LSLYRA R T P V S+F + +LP ++AL +L P T++ G++ +R +R +D A L+ L + RR R G+ +++G+V+RHK++ +RA ++GWDRRPA+DVS W+GV G QPFY +PD D + LGG R + YVAQENLE RI + A F FD + F+P+E++ + YP L P
Sbjct: 5 AAERSVTLSLYRAMWRSTMAPAVRHSRFTVPLGNLPDNVSALARRLKP---TDQRGLQALLRAAWRDEGGTLDG---------AFQALRALGELHSECEETVKRRVDKADRRGIHYQIGEVLRHKVFGFRAVVIGWDRRPAVDVSSWDGVQNLPSGTEQPFYKMLPDLADCIEHLGGPRDVRYVAQENLERVPLSHRRILHPSLSAAIFPAFDGTHGRFVPSEQLAFAYPGSELEP 228
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|551609240|ref|XP_005785839.1| (hypothetical protein EMIHUDRAFT_111823 [Emiliania huxleyi CCMP1516] >gi|485639050|gb|EOD33410.1| hypothetical protein EMIHUDRAFT_111823 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 128.257 bits (321), Expect = 5.258e-28 Identity = 79/241 (32.78%), Postives = 124/241 (51.45%), Query Frame = 0
Query: 14 SVVLSLYRACLRWTQIPLVVKSKFIAG--DHLPSTL--AALQL-SPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVI-------------PQAFECFDPSTQSFLPTERITWQYPA 236
SV +LYR+ RW + P V + A D LP+++ AA +L SPR G E +R+ +R A + +++ A L+ L L + +R +N R + R+G+VVRH Y YR ++GWDR+ +DVS W+G+ SS G +QPFY +PD D LGG R++ YVAQENLE +R++ + AF +D + +F+P++ + ++YP
Sbjct: 2 SVAQALYRSMWRWVRSPAVRCNPHFALPLDKLPASVVRAAERLESPR---GAAGSRELLRLAWREAASTSGEAATAAELDDAFRVLRVLGELGEELEALQKKRASNAWRVDVEMRIGEVVRHSQYGYRGVVLGWDRKAEVDVSGWDGLRKSSRGGDQPFYRLLPDYTDCAELLGGPREVKYVAQENLERLPPRYTRVHHPALLSPGASPPVRRDDHGAFLRYDATAAAFVPSDELAYEYPG 239 HSP 2 Score: 117.087 bits (292), Expect = 2.588e-24 Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 0
Query: 109 SRREANRARDGLTFRVGQ-----------------VVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHL 239
+ R A R G+TF VGQ V+RH+ + +RAA++GW+RRP +DVS W+GV G +QPFY +PD D + LGG R + YVAQENLE E I+ +++P F+ +D ++ +FLP +++ + Y D L
Sbjct: 437 AERAAKADRGGITFGVGQALRSSTSHTTTTVFADHVLRHRKFGFRAAVLGWERRPEVDVSGWDGVQGLPSGADQPFYRMVPDMGDCVGLLGGPRGVRYVAQENLEELPLSERAISHELLPHFFDGYDAASGTFLPVQQLRYWYSRDPL 584
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|760448237|ref|XP_011401187.1| (F-box only protein 21 [Auxenochlorella protothecoides] >gi|675355734|gb|KFM28174.1| F-box only protein 21 [Auxenochlorella protothecoides]) HSP 1 Score: 102.064 bits (253), Expect = 5.088e-21 Identity = 68/245 (27.76%), Postives = 114/245 (46.53%), Query Frame = 0
Query: 11 TSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYL-NRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVN--QPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTF 252
T R ++L YR+ LRW + V + GD L L A + P L + + + R F + K++ + E ++ A+D L+ L + + + + R R G+ + +G V H + YR + GWDR D + W A+++GV QPFYH +PD D + GGVR YVAQ+N + +R+ + F+ D T ++P+ ++ ++YP D+ P S
Sbjct: 2 TDRRLILVAYRSVLRWARDNAAVPFQLRRGDVL---LLAPGVVPTTLQDAAAVSQIARAAFHLN-KDLKPEEAGEAVDRALDALRLLHDDYGGAIARMRALRGDRADRSGVAWALGTVFAHAQHGYRGVVFGWDRECERD-AEW----AAAMGVRPRQPFYHVLPDEGDCVRLFGGVRVSKYVAQDN--VVPLAGARVMHRALDNYFDGHDAGTGRYIPSRKLQFEYPDDYRALTPQPVGADSNL 235
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|397638869|gb|EJK73261.1| (hypothetical protein THAOC_05129 [Thalassiosira oceanica]) HSP 1 Score: 92.4337 bits (228), Expect = 3.024e-16 Identity = 45/129 (34.88%), Postives = 71/129 (55.04%), Query Frame = 0
Query: 109 SRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALES---RINSDVIPQAFECFDPSTQSFLPTERITWQY 234
+RR R + + + +GQ+VRHKLY +R IVG+D +P IDVS W+G+ +PFYH PD ND GG R Y ++NLE + + +D + +A +DP T S+ P++ + + +
Sbjct: 425 ARRVNKRVKPKIEYSLGQIVRHKLYGFRGVIVGFDEKPRIDVSNWDGLQGVEDASEKPFYHIRPDINDCTKAFGGPRDFRYCCEDNLEFISSYTGGPLELATD-LNEAEWRWDPVTASYTPSQELKFMF 552
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|552840745|ref|XP_005850129.1| (hypothetical protein CHLNCDRAFT_142233 [Chlorella variabilis] >gi|307109790|gb|EFN58027.1| hypothetical protein CHLNCDRAFT_142233 [Chlorella variabilis]) HSP 1 Score: 87.0409 bits (214), Expect = 1.167e-15 Identity = 67/249 (26.91%), Postives = 119/249 (47.79%), Query Frame = 0
Query: 8 SASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGD-HLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARD---GLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTF 252
+ + + L++YRA L+W++ V GD H + + + L + I R F A ++++ + E ++ +DG++ L+ T + + RE R R+ G+ F VGQV HK Y +R + GWDR D W+ + + +QPFY+C+PD D + GGVR YVAQ+N++ ++SRI + F + S ++P ++ ++YP + A+P +
Sbjct: 2 AGRGDKRLALAVYRAMLKWSRTNADVPFSLRPGDVHALAPHGSAAAAALSLQDAAAIPPIARAEFDA-CRQLEGEEAEEALDRGIDGVRLLH--TVYSQQVQGMREVRRDREDKTGVKFAVGQVFIHKKYGFRGVVYGWDRECQRD-EDWQRAM-NVQHPHQPFYYCLPDETDCVRLFGGVRITKYVAQDNIQ---PIDSRIVHRALDNYFSSYSASRSRYIPCRKLQYEYPDRYEAEDAAPVGDDANL 242
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|545370476|ref|XP_005649874.1| (hypothetical protein COCSUDRAFT_61552 [Coccomyxa subellipsoidea C-169] >gi|384251853|gb|EIE25330.1| hypothetical protein COCSUDRAFT_61552 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 80.4925 bits (197), Expect = 1.561e-13 Identity = 45/160 (28.12%), Postives = 77/160 (48.12%), Query Frame = 0
Query: 80 AKVVSEKMNLAVDGLQYLN-RFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADH 238
+ +S + ++ +Q L+ + +L + RE R + F +G V HK + Y+ + GWD+ D + V A QPFYH +PD +D G VR YVAQ+N+E + R+N I F+ + P ++P R+ ++YP ++
Sbjct: 37 GEELSNAFDQGLEAVQLLHTEYADLLSRLRTSREVRTDRSRVAFSLGTVFIHKKFGYKGVVYGWDQECERDPAWAAAVHADP---TQPFYHVLPDEDDCQRIFGAVRISKYVAQDNMEPL-LVPHRVNHRAIAHYFDSYSPDLLRYVPNSRLQYEYPDNY 192
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|1210511526|dbj|GAX29340.1| (hypothetical protein FisN_16Hh225 [Fistulifera solaris]) HSP 1 Score: 80.1073 bits (196), Expect = 2.624e-12 Identity = 92/362 (25.41%), Postives = 152/362 (41.99%), Query Frame = 0
Query: 57 LTNKEGIEEAIRMLFRAHAK-EMDAKVVSEKMNLAVDGLQYLNRFT--RVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQP--FYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPAD---HLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFP 410
+T+ + R+LFR +A ++ ++++ A L+ LN+ T + A+ RR R G+ F VGQVVRH+ +R IVGW++ + S L + ++P YH + D+ D H + K + VA + + + L RI +++ F+ F+ +F+P + + YP D H+ PR P P +++ VQ +FA +RI + + G L+ H L+ LA P+ LS + + L AF D L QD + R+ R + ++VG +RH GYRGVV GW+ P
Sbjct: 92 ITHSSDLRNFFRVLFRINAYLPVEETYQKKRIDNAFQALKSLNQLTSETIAPFAQQRR---IDRTGVQFSVGQVVRHREKRWRGVIVGWEK---ANHSAPLSSLTTKQYSSEPTVTYHVLVDAGDA-HQMNRTTKGITVAFQIEQETNPLLQRIRHEMVDDMFDGFEQG--AFVPPPLLAYTYPNDEISHIPPRNLP--------PDIENLAKQMVQGVQ-------------DFANELERIME--QQAGGPLDGLH--------LTALAA-----GHVAPTKVELSFVQQVIQESVHPITMLALHVRDLIAFVDQL---QDAFTHRQ--RPHPPIHFRVGNVIRHKIFGYRGVVTGWDDRP 403 HSP 2 Score: 79.7221 bits (195), Expect = 3.275e-12 Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 0
Query: 100 FTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLA---SSLGVNQ-PFYHCIPDSNDTLHFLGGVRK----LMYVAQENLELCHAL 201
F L+DA + R+ R + FRVG V+RHK++ YR + GWD RP +DVSRW+G+ A N+ PFYH + T H G+ + YV QENLE+C+ +
Sbjct: 359 FVDQLQDAFTHRQ--RPHPPIHFRVGNVIRHKIFGYRGVVTGWDDRPVVDVSRWDGIQALIQQGKDPNEMPFYHVV---RHTEHHERGLDTPGAAMRYVCQENLEVCYEI 463
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|1210531845|dbj|GAX09532.1| (hypothetical protein FisN_16Lh225 [Fistulifera solaris]) HSP 1 Score: 77.0258 bits (188), Expect = 2.715e-11 Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 0
Query: 100 FTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLA----SSLGVNQPFYHCIPDSNDTLHFLGGVRK----LMYVAQENLELCHAL 201
F L+DA + R R + FRVG V+RHK++ YR + GWD RP +DVSRW+G+ A PFYH + T H G+ + YV QENLE+C+ +
Sbjct: 360 FVDQLQDAFTHRL--RQHPPIHFRVGDVIRHKVFGYRGVVTGWDDRPVVDVSRWDGIQALIQQGKDPNEMPFYHVV---RHTEHHERGLDTPGAAMRYVCQENLEVCYEV 464
BLAST of EWM29854.1 vs. NCBI_GenBank
Match: gi|971512887|dbj|GAQ85319.1| (hypothetical protein KFL_002290100 [Klebsormidium nitens]) HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-9 Identity = 68/239 (28.45%), Postives = 108/239 (45.19%), Query Frame = 0
Query: 9 ASTSRSVVLSLYRACLRWTQIPLVVKS-KFIAGDHLPSTLAAL----QLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVD-GLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWD---RRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALE--SRINSDVIPQAFECFDPSTQSFLPTERITWQYPA 236
A + RSVVL LYR+ L +T+ + + + +TL + + + +G + IR FR + D S + A+D GL+ L F LR S RE +VG V++H+ Y Y+ I GWD +RP V + V G NQ FYH +PD +D G R MYVAQ+N+ ++ SR S + P+ + ++P++ + + +P
Sbjct: 2 AMSERSVVLGLYRSLLAYTKSASLRHAWTHVVPPSFKATLCGVNDVGHCAKFATADAKGAMDLIRSSFR---QSQDLPAGSPTIVTAIDRGLEALRVFN-ALRAVVSLREERLDSSVARHQVGTVIQHRRYGYKGLIFGWDPTCQRPKSWVEK-NRVDDLEHGANQVFYHVLPDESD-----GQPRNEMYVAQDNIVEMPLVQIYSRSQSRLFPKGYS---KGLDRYIPSQTLRYIFPG 227 The following BLAST results are available for this feature:
BLAST of EWM29854.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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