rna8506, rna8506 (mRNA) Nannochloropsis gaditana

Overview
Namerna8506
Unique Namerna8506
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length447
Alignment locationKK037249.1:122614..123169 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102777g1.9478.mrna
Orig protein idgnl|cribi|Naga_102777g1.9478
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:122614..123169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102777g1gene8244Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8506rna8506-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22194.1cds8479Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8506 ID=rna8506|Name=rna8506|organism=Nannochloropsis gaditana|type=mRNA|length=447bp
ATGGCAGCAACTGCGCCAGTCGCTGCACCTACCAGTGCGTTGATAACCCA
GGCGCAACAGAAGACAGTGGCATATTTGCCGAGGATCGACTCCCAAAGAG
CTCACACAGTGAGTGCTACGGACTTGGAGGGGGCTTTCCAGTACGAAAAA
AAATACGTTGGCAAAGTAAGAGATGTCTATACCACGGCAGACTCCCTCCT
TCTCATTTCCACGGACCGCCAAAGCGCATTCGACCGCAACCTTGCCTCAA
TCCCGTTCAAAGGACAAGTGTTGAACTTAACCTCCCAATGGTGGTTCGAG
AAGAGTAAAGATCTGGTGCCCAACCACATCCTTGCGGTTCCTCACCCAAA
CGCCTGCATCGGGAAGAAATGCACGATGTTTCCCGTCGAATTCGTCATGC
GCGGCTACATTACGGGTATTGCGGTCATGCCCTGCCCGAGGGGTTGA
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protein sequence of rna8506

>rna8506-protein ID=rna8506-protein|Name=rna8506|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MPHTTSSFRPRRSCARGACPKRIGSSALPTPMPSLPLARRLPPREDSFWS
TPSTSLARYTPPLPPSLPPSLPPSFVSFLLFSPDFSPARTLKSPASCPSS
VVSPLLPFPSSSPSIPPPPARLRTGK
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mRNA from alignment at KK037249.1:122614..123169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8506 ID=rna8506|Name=rna8506|organism=Nannochloropsis gaditana|type=mRNA|length=556bp|location=Sequence derived from alignment at KK037249.1:122614..123169+ (Nannochloropsis gaditana)
ATGCCGCACACGACGAGCTCATTTCGGCCGAGGAGATCGTGTGCTCGGGG
CGCATGTCCCAAGAGGATTGGGAGGTAGGCGCTCTGCGGACATGGCTAGG
AGGGCAGGAACGAGGGCCCACTCTGCGGGAGCCCTCTaagtggaggggaa
ggctggcgggaggaagggacgaagggCAAAGACCGCTGCGGCTTGGAAAA
gaccctcaccttccctctttccctcacccccttccttccttcctcccagc
tcTGCGCTTCCTACGCCCATgccctctttgcctttgGCCAGAAGGTTGCC
TCCGCGCGAGGACTCATTCTGGTCGACACCAAGTACGAGTTTGGCAAGGT
Acacgcctcccctccctccctccctccctccctccctccctccctccttc
gtgtccttcctcctcttttcacCAGATTTCAGTCCAGCACGGACGCTCAA
GTCGCCTGcgtcctgtccttcctctgttgtttcccccctcctccccttcc
cttcctcctccccttccattcctccgccccctgccAGACTGCGGACGGGC
AAGTGA
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Coding sequence (CDS) from alignment at KK037249.1:122614..123169+

>rna8506 ID=rna8506|Name=rna8506|organism=Nannochloropsis gaditana|type=CDS|length=762bp|location=Sequence derived from alignment at KK037249.1:122614..123169+ (Nannochloropsis gaditana)
ATGCCGCACACGACGAGCTCATTTCGGCCGAGGAGATCGTGTGCTCGGGG
CGCATGTCCCAAGAGGATTGGGAGctcTGCGCTTCCTACGCCCATgccct
ctttgcctttgGCCAGAAGGTTGCCTCCGCGCGAGGACTCATTCTGGTCG
ACACCAAGTACGAGTTTGGCAAGGTAcacgcctcccctccctccctccct
ccctccctccctccctccctccttcgtgtccttcctcctcttttcacCAG
ATTTCAGTCCAGCACGGACGCTCAAGTCGCCTGcgtcctgtccttcctct
gttgtttcccccctcctccccttcccttcctcctccccttccattcctcc
gccccctgccAGACTGCGGACGGGCAAGTGAATGCCGCACACGACGAGCT
CATTTCGGCCGAGGAGATCGTGTGCTCGGGGCGCATGTCCCAAGAGGATT
GGGAGctcTGCGCTTCCTACGCCCATgccctctttgcctttgGCCAGAAG
GTTGCCTCCGCGCGAGGACTCATTCTGGTCGACACCAAGTACGAGTTTGG
CAAGGTAcacgcctcccctccctccctccctccctccctccctccctccc
tccttcgtgtccttcctcctcttttcacCAGATTTCAGTCCAGCACGGAC
GCTCAAGTCGCCTGcgtcctgtccttcctctgttgtttcccccctcctcc
ccttcccttcctcctccccttccattcctccgccccctgccAGACTGCGG
ACGGGCAAGTGA
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Synonyms
Publications