rna8501, rna8501 (mRNA) Nannochloropsis gaditana

Overview
Namerna8501
Unique Namerna8501
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length354
Alignment locationKK037249.1:113967..116562 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100621g3.6226.mrna
Orig protein idgnl|cribi|Naga_100621g3.6226
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:113967..116562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100621g3gene8240Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8501rna8501-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22197.1cds8474Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8501 ID=rna8501|Name=rna8501|organism=Nannochloropsis gaditana|type=mRNA|length=354bp
ATGACGGTTAATATCAAGGTCATTAAGGATAGCTATGTGCGCCCTACGAC
CCCCCCGGCCACTTCCGCCGGCTCGTCTCCTCCACGCGTCGAGCTTGCTG
GAGTCGATGTTCTCTTTAACCGCATGAATCTCCGCGTGGTCTACTTCTTC
CCTGCTCCCCTTTCCCCTCACGTCCTCCGCTCTTCTCTCTCCAAAGTCCT
GGACAAGTACCCCATTCTGGGGGGGCGCCAACGAAAGGAGGGAAAGAAGA
CGCACTACATCGAATTGAACGGGAAAGGGGTCTTGGTCCGGCAACAATTG
GCTACCGTGAAAGGCGGGGACAAGGGGAAAGGAGGAGGAGGCAGGGATGG
GTGA
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protein sequence of rna8501

>rna8501-protein ID=rna8501-protein|Name=rna8501|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MLTLQRIWHDSLLFLKGVFEYVICDAIHEYHYIFWGLRCLLLRGDTHPSL
LYFLSTLCPQNPQLSAAMLHALVTAFLRAICQVFKFYTVQKVLNASISVV
EAYPLAGSNNLANNERYEGKGGAKEGEEQDSQADTCQLASDTLSSLGTED
GKKGQGNEGGKVEGLEEEFIFQARSLNDVAHLQASGLVTSRSTAL
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mRNA from alignment at KK037249.1:113967..116562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8501 ID=rna8501|Name=rna8501|organism=Nannochloropsis gaditana|type=mRNA|length=2596bp|location=Sequence derived from alignment at KK037249.1:113967..116562+ (Nannochloropsis gaditana)
ATTAGAAAACACGTCTCCTCATATAACACATCTCATGTATCCAGACACGC
ATTTCGAACGTTGATCTTTCAGCAGGAAATGCATCTGTTCCTTCCTGCTA
ACTCAGGGAAATAGATTCCAGGATACTTCTGGGCAACATCCTCGCAAGAT
AACCTCGCCGGGATAATATGCTGCcattttccccaccttcacATCCTGCG
AAACGAAAGCACTTCGCCACATCCCCGCTCGTCGTTTTTTATATTATACG
GCATGGTGAAAGCACCGGAAACCGGCAAGGTATTCTCCAGGGCCAACGAG
ATTATCCTTTGACAGACACGGGAAGGCAGCAAGCGCAGGAGACGGGCCGA
CGGCTTCGGCAAGATGCATCTTTACAAGACCTGGAAACAGGGGATGTCTC
TTGCTTCTTTGACCGCATATATTCTAGTGATTTAACAAGGTAAGGCCAAG
AACAGTAAATGAAGAGTGAAAACTAGGGCTCTGTACGGATATATGAGAGT
ACTTGAGAAtaaaagagaagagggaatgaTTATCTCGCTGCCATGCATTC
ACCGCCCAACCCCTTCTCGTTCCCCTTGCGTGGTATATATTTTCCAACAG
AGCGAAAAATACCGCCGAGATAATCGTCGAGGAACTGACAGGTGGAAAGC
GCCAACCAAGCAAGGATCCTAGTCATCACGGGAGCAACGACACCAGCAGC
AATACCTGTCATAACGACGACAATGCGAATGACATTGGACTTGAAAGCCT
GCTGACCCTTGACACCGATCTTAGGGAAATCTCAGGAGGCGCGCGGGAGG
GCCAGCCGCTTGGTCTTTCACTGCAGGAGGCAATGCGTCGGACGGCTTTG
AAGCAGGTGCCTGAGTGCGGTTtctactttcctcccttacccttGTGTCT
TTAATTCTCTGCCCCTTAGTTTCCGTTCAAGATCGATAGTTTTATGTAGG
TGTGCCTGTTCGTTATTGCTAgatttcctttctctgtcgTTTGTCGATTT
TCAGCCTTTACCTgcctatccctcccttcccccctgcgCTTACTCACTGC
CTATTCCTATTATAAACATGCATTTTGCTACACCCTTGTTACCTTTCTAG
GGCATTCCCCTCGAACAGCTGCAACATATGCCATCGGAGACCCTTCACTC
GCTTCATTGCCGTGCCCGCTCCTTCGTCCGACGTGTCCTGactgcagcag
cagaaatGCAAGCcgggggcgagagagaagagaaatgCACGGCCGATCTT
GCCAAGGTAGAAAatagaggaagagagggggctCCGGAAGCggaaggaca
aagagggccCGCGCGCGTCCTGCTCGTCTCCCACGGCGGCTTGCTCCTCC
AGATGTTTCAGAAGGTAATTGACGTGCTCGTCCCTGTTTCATGCTCACTC
TTCAACGTATTTGGCACGATTCTCTTTTGTTTCTTAAAGGCGTTTTTGAA
TATGTAATATGCGATGCAATTCATGAATACCATTACATTTTTTGGGGTTT
ACGGTGCTTGCTCCTTCGAGGAGAcacccatccctctcttttGTATTTTT
TGTCAACCCTCTGCCCTCAAAATCCTCAATTATCGGCCGCTATGCTACAC
GCTCTTGTCACGGCCTTTCTTCGCGCCATTTGTCAGGTTTTCAAGTTTTA
CACAGTGCAAAAAGTCTTAAATGCCTCCATAAGCGTGGTTGAGGCCTACC
CTCTTGCGGGGTCCAATAATTTGGCGAACAACGAGAGAtatgaagggaaa
ggaggagctaaagagggggaagaacaAGACTCACAAGCGGACACCTGCCA
ATTAGCCTCTGAcactctctcctctctgggtacggaggatgggaagaaag
ggcaaggaaatgagggaggaaaggttgaagggctggaggaggaatttaTT
TTTCAAGCGCGGTCCCTGAATGACGTGGCGCATTTGCAGGCTTCTGGCTT
GGTGACATCGAGGAGCACGGCTTTGTAGGGGCTATGGGGTTGGAAACATA
ttttggggagggaaagaagggcggcTGGATTTCAAAAAGAGATCTTTTTT
GGAAATATCAGTCAGTCTAGATAGCTTTAAATAGCCAGGCATGGGCGCAT
TGATAACAAGGCTGTGGTCTGAAAGTGGACCAGACTGGTGTATATGCTGC
AGTCGTGTCTGTGCGGGTGTGCACTGACATGCTTTGTAGAAATGACTGGG
AATTTTGTAGAGTATatcggagaggaggaccaaACATGCGAAATAAAGAA
ACAGAAACGGGCCAGGCTTAGTTTTTGGAACATGAAAAATAGGGAGGATT
GGGAGTCCAGAGGGTAAAGGGTGGGGTATGACATGGGTGTATGATCAATG
CGGGATGGGGAACATGGGGATGTTTCAAGGGAAGCGATCGACAAAGCAAC
AACCTGCGTGGATATTGGCAATTCTCGGCAGGATGAAGGACAGTGGAGAA
TTGAATGGGTCAATGCACCGATCTCACCGTCCTCATTGCGAACGGTCAAG
ACTTGTGACTGACGAATAGAAAAAGGTTAAAACGATGATCGAATGCACTT
GCTACAGGGAACAATACCCTCGAGTATTCCTATCGAAAGCCAAAAT
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Coding sequence (CDS) from alignment at KK037249.1:113967..116562+

>rna8501 ID=rna8501|Name=rna8501|organism=Nannochloropsis gaditana|type=CDS|length=588bp|location=Sequence derived from alignment at KK037249.1:113967..116562+ (Nannochloropsis gaditana)
ATGCTCACTCTTCAACGTATTTGGCACGATTCTCTTTTGTTTCTTAAAGG
CGTTTTTGAATATGTAATATGCGATGCAATTCATGAATACCATTACATTT
TTTGGGGTTTACGGTGCTTGCTCCTTCGAGGAGAcacccatccctctctt
ttGTATTTTTTGTCAACCCTCTGCCCTCAAAATCCTCAATTATCGGCCGC
TATGCTACACGCTCTTGTCACGGCCTTTCTTCGCGCCATTTGTCAGGTTT
TCAAGTTTTACACAGTGCAAAAAGTCTTAAATGCCTCCATAAGCGTGGTT
GAGGCCTACCCTCTTGCGGGGTCCAATAATTTGGCGAACAACGAGAGAta
tgaagggaaaggaggagctaaagagggggaagaacaAGACTCACAAGCGG
ACACCTGCCAATTAGCCTCTGAcactctctcctctctgggtacggaggat
gggaagaaagggcaaggaaatgagggaggaaaggttgaagggctggagga
ggaatttaTTTTTCAAGCGCGGTCCCTGAATGACGTGGCGCATTTGCAGG
CTTCTGGCTTGGTGACATCGAGGAGCACGGCTTTGTAG
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Synonyms
Publications