rna850, rna850 (mRNA) Nannochloropsis gaditana

Overview
Namerna850
Unique Namerna850
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1832
Alignment locationCM002456.1:568132..570036 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100017g41.323.mrna
Orig protein idgnl|cribi|Naga_100017g41.323
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:568132..570036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g41gene814Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29825.1cds850Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna850rna850-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna850 ID=rna850|Name=rna850|organism=Nannochloropsis gaditana|type=mRNA|length=1832bp
CTGTTCACATCGCCCTCGTTGTCCCGACAACCCCAAAAGAGCATGTATTT
TTAGTCGACAAAAGCCTGAAAAGAGGTGTTCTTGATTTGACATTACATGA
AAAAGAGAAGGACTACGTATTTTGGGGAAAGGTCAACTACGTGGATGGCC
AAGGACGGCAACGTCCCTTGTTCTCCCTCTTCCGTCCCTCACGATCCCCC
CCACGTTCGCGTTCCAACCACGCCAGGACACAAATCGCAGGACATGTCGT
CCAAAAAGCGCGTGTCATATTTCTACCACGGCGACGTGGGTCATTATTAC
TACGGGCCTGGACATCCGATGAAGCCCCATCGGCTCAAGCTCACCCACCA
TCTTGTGCTCGGATATGGACTCTACCGAAAAATGGAGGTCTACCGCCCGC
ACATCGCCACCACCCAGGAGCTGCAGAAGTTCCATTCTCAGGAGTACGTG
AACTTCTTGTCACGTGTCAACCCGGACATGGGCCGTACCCTAAGCTCGAG
CGTGCATAGCAAGTTCAATGTAGGCGAGTACACCGACTGCCCCATATTCG
ACGGCATGATGGAGTTCTGCAAGATATATACCGGCTGCTCGATCGATGGG
GCTCAAAAGCTGAACCACAAGATCACCGACGTTGCGGTGAATTGGTCGGG
GGGGCTGCACCACGCGAAGAAAGGGGAGGCGTCGGGCTTCTGCTACATAA
ATGACATCGTCTTGGCGATCCTGGAGCTCCTCAAGTACCACCCGCGCGTG
CTCTACATCGACATCGACATCCACCACGGGGACGGGGTGGAGGAGGCCTT
CTACTGCACGGACCGGGTGATGACGGTCTCCTTCCACCGGTACGGCGACT
TCTTCCCCGGCACCGGGAACATCAAAGACGTGGGCGCCAAGAACGGGAAG
TACTACTCGGTGAACGTGCCCCTGGAGGAGGGCATCGACGACGCGTCCTA
CGAGCGGGTCTTCAGGCCGGTGATGGCCAAGGTCATGGAAGTCTACCAGC
CCTCGGCCGTGGTCTTGCAGTGCGGCGCCGACTCCCTGTCGGGCGACAGG
CTTGGCTGCTTCAATCTGACGCTGCGGGGGCACGCGAAGTGCGTGGAGAT
GATGAAGGGCTACAACGTCCCCCTCCTGATATTGGGGGGCGGGGGCTACG
CGATCAGGAACGTGGCGCGCTGCTGGGCCTTCGAAACCTCGGTGCTTTTG
GAGGAGGAGGTGAGCGACGAGATCCCCCGCAACGACTACTATGACTATTA
CGCCCCCGACTATAAGCTGCACCTGCCGCCGGGGACGACGGAGAACCAGA
ACAGCACGGAGGGTCTGGAGGCCATCAAGGTCCAGATCTTGCAGCAGCTC
TCGCAGATTCCCGGGGCCCCGTCCGTGCAGATGCAGGAGGTGCCTCCGGA
CTGGGCGACGAACGAGAGGGGAGGCGGAGAGGACGAGGAGGACCCGGATG
TGCGCTCGTCGAACCGGAATCGGTTCGGGGGGGAGAGGCGGGAGCACGAG
GCAGAGTTTTACGATGGGGGGAAGGACCAAGACCGGTAGGGGGAAGACGG
CGTCAGATTCTTATGGCCCCGGCCGAAGGGGATAGAGGGCTGGACGCTGG
CCAGGGACACCTGGCTCTTGAAGGGGAGTGCTGTTCCCCCGTCTAAGAAA
GTCGAAGAGCGTGCCAAAGCTACCTCTCTGAAATCCAATAAAACCCGAAA
CGAAAAGCACAGAACATGTGATGACTTAAATACACAGTGCATTTGCCCTT
TGTCTGCGACCAACCCTTCTCAAGTCTCACGTGTGGACCGAAACACTCGA
TGACCTCTCTCCATCGCCGGGGCCTCGCTCAC
back to top

protein sequence of rna850

>rna850-protein ID=rna850-protein|Name=rna850|organism=Nannochloropsis gaditana|type=polypeptide|length=414bp
MAKAFEGSSGRGEHGGHGSYRRCHSGAHAEAITSMGDPAARSVRQIQLYR
VPLLDMANASEGVQSGSGKLRVYGPEFDGVVRPGGRGGPVRERDAATEME
RGGGGGGARGGEGGEIEDGGEADFFPPNDPEGPMVETELLQSLVTIIRQE
GIEQPVRLLITGSLAEAMTDSLRDGQSGTQELAKELVMEVLADPNSAAAV
QHLLMRPELAASLRGLVHPLLLLPFTKRESHRLLKQQLDWLMVRNPATEQ
SLGGLGQLLLRLASTRAAIASLLSWSLSPSGPLPPLVTDLTSDRLVPLLA
PATTGALTGAVHEALEDEYIRELAKDTMKGLLLRVAKMHAAAAAAAAEAR
RREDAESREVAVKREEEEEGEGGHGAETEGGGGRAEDPEGEDAGERGPLK
GDERGKEVLDLGRR
back to top

mRNA from alignment at CM002456.1:568132..570036-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna850 ID=rna850|Name=rna850|organism=Nannochloropsis gaditana|type=mRNA|length=1905bp|location=Sequence derived from alignment at CM002456.1:568132..570036- (Nannochloropsis gaditana)
ATAGTCACGTGAAAAAATCGGCGTAACAAATGCCCCTCGGCCCCTACGGC
CCACCTCCTCTGCTTCGATCTCGCGTCGACCCCGTCGTCACCCGGAACGC
CTGGCCGTGTCCACGAGGTGTAGCCCACTTATTCCGTCCCTTTCCTATGT
TTGACAGGCTATGAGGGGACGGCTGGCACGAGCTGGAACATCGCACGCTG
CCCTCGCCTCGGCTTGTGCGTGTCTGGCGCTACACAGGCAACCCCCCCTG
CTCGAGGCGGGCACGGGATTATCGAGTGACGACGATGGTTCCGCTAGTCC
ATCCGCGCAAGGTTCACCTGAAGCTCGAGGTACACGCCCAAGACGCAACA
TGGCGCGGCGGCGGACCACGAGCGTCGTTCCCGTGGGAGCAGAGGAACTG
GAATGGACGCCGGAGGGGGGGGAAGCGCCGTGGCTAGGCAGAGCTCCAGC
ACGTCTCGAAACAGAGGTGCCCAAGTGAGGGACGACGAGGGCGTGGGACG
TTTACATCGCAGGAATTCCAAGGGAAAAGAATGGCAAAAGCGTTTGAAGG
AAGCAGCGGAAGGGGGGAGCACGGAGGGCACGGCAGCTACCGACGCTGCC
ACAGCGGCGCGCATGCTGAGGCAATTACAAGCATGGGAGACCCGGCCGCC
AGGTCCGTGCGACAAATACAACTCTATCGCGTCCCGCTTCTTGACATGGC
AAACGCGTCGGAGGGAGTGCAATCTGGCTCCGGGAAATTGCGTGTTTATG
GGCCGGAGTTTGACGGGGTGGTGCGTCCCGGAGGAAGAGGCGGCCCTGTA
CGAGAGCGTGATGCCGCGACGGAAATGGAGCGAGGAGGAGGAGGAGGAGG
GGCAAGGGGAGGGGAAGGGGGGGAAATCGAGGACGGAGGCGAGGCGGACT
TCTTCCCCCCCAACGACCCCGAGGGCCCCATGGTGGAGACGGAGCTCCTG
CAGTCTCTGGTGACCATCATCCGGCAGGAGGGCATCGAGCAGCCTGTGCG
CCTCCTCATCACAGGGAGTCTGGCGGAGGCCATGACAGACTCGCTCAGGG
ACGGGCAGTCTGGCACGCAGGAGCTGGCGAAAGAGCTGGTCATGGAGGTC
CTGGCAGATCCGAATTCGGCCGCGGCGGTGCAGCACCTGCTGATGAGGCC
CGAGCTGGCGGCCTCCCTCCGGGGGCTGGTGCACCCCCTTCTCCTTCTCC
CCTTCACCAAGCGAGAGTCCCATCGCCTCCTCAAGCAACAGCTGGACTGG
CTCATGGTCCGGAACCCAGCCACGGAGCAGTCTCTCGGGGGCCTGGGGCA
GCTCTTGCTTCGGCTGGCCTCCACGCGCGCGGCCATCGCCTCCCTCCTCT
CCTGGTCCCTCTCCCCCTCGGGGCCCCTCCCTCCCCTCGTCACCGACCTA
ACCAGCGACCGGCTCGTCCCCCTCCTGGCGCCCGCCACCACCGGGGCCTT
GACGGGCGCCGTTCACGAGGCTCTGGAGGACGAGTACATCCGGGAGCTCG
CAAAAGACACCATGAAAGGCTTGCTCCTGCGCGTTGCTAAAATGCACGCC
GCCGCCGCCGCCGCAGCCGCAGAGGCGAGACGGCGGGAAGACGCAGAGAG
CAGGGAGGTTGCGGTGAAGAGGGAGGAGGAGGAAGAGGGGGAGGGCGGGC
ACGGGGCAGAGACAGAGGGAGGGGGAGGGCGTGCTGAGGATCCTGAAGGG
GAGGACGCAGGAGAGCGCGGCCCTTTAAAAGGGGATGAGAGGGGTAAGGA
GGTCCTCGACCTTGGGAGGAGATGATGCCTGCGTTGGGAATAGACGGGAC
AGGGGAGTGAGCGAGGCCCCGGCGATGGAGAGAGGTCATCGAGTGTTTCG
GTCCACACGTGAGACTTGAGAAGGGTTGGTCGCAGACAAAGGGCAAATGC
ACTGT
back to top

Coding sequence (CDS) from alignment at CM002456.1:568132..570036-

>rna850 ID=rna850|Name=rna850|organism=Nannochloropsis gaditana|type=CDS|length=1245bp|location=Sequence derived from alignment at CM002456.1:568132..570036- (Nannochloropsis gaditana)
ATGGCAAAAGCGTTTGAAGGAAGCAGCGGAAGGGGGGAGCACGGAGGGCA
CGGCAGCTACCGACGCTGCCACAGCGGCGCGCATGCTGAGGCAATTACAA
GCATGGGAGACCCGGCCGCCAGGTCCGTGCGACAAATACAACTCTATCGC
GTCCCGCTTCTTGACATGGCAAACGCGTCGGAGGGAGTGCAATCTGGCTC
CGGGAAATTGCGTGTTTATGGGCCGGAGTTTGACGGGGTGGTGCGTCCCG
GAGGAAGAGGCGGCCCTGTACGAGAGCGTGATGCCGCGACGGAAATGGAG
CGAGGAGGAGGAGGAGGAGGGGCAAGGGGAGGGGAAGGGGGGGAAATCGA
GGACGGAGGCGAGGCGGACTTCTTCCCCCCCAACGACCCCGAGGGCCCCA
TGGTGGAGACGGAGCTCCTGCAGTCTCTGGTGACCATCATCCGGCAGGAG
GGCATCGAGCAGCCTGTGCGCCTCCTCATCACAGGGAGTCTGGCGGAGGC
CATGACAGACTCGCTCAGGGACGGGCAGTCTGGCACGCAGGAGCTGGCGA
AAGAGCTGGTCATGGAGGTCCTGGCAGATCCGAATTCGGCCGCGGCGGTG
CAGCACCTGCTGATGAGGCCCGAGCTGGCGGCCTCCCTCCGGGGGCTGGT
GCACCCCCTTCTCCTTCTCCCCTTCACCAAGCGAGAGTCCCATCGCCTCC
TCAAGCAACAGCTGGACTGGCTCATGGTCCGGAACCCAGCCACGGAGCAG
TCTCTCGGGGGCCTGGGGCAGCTCTTGCTTCGGCTGGCCTCCACGCGCGC
GGCCATCGCCTCCCTCCTCTCCTGGTCCCTCTCCCCCTCGGGGCCCCTCC
CTCCCCTCGTCACCGACCTAACCAGCGACCGGCTCGTCCCCCTCCTGGCG
CCCGCCACCACCGGGGCCTTGACGGGCGCCGTTCACGAGGCTCTGGAGGA
CGAGTACATCCGGGAGCTCGCAAAAGACACCATGAAAGGCTTGCTCCTGC
GCGTTGCTAAAATGCACGCCGCCGCCGCCGCCGCAGCCGCAGAGGCGAGA
CGGCGGGAAGACGCAGAGAGCAGGGAGGTTGCGGTGAAGAGGGAGGAGGA
GGAAGAGGGGGAGGGCGGGCACGGGGCAGAGACAGAGGGAGGGGGAGGGC
GTGCTGAGGATCCTGAAGGGGAGGACGCAGGAGAGCGCGGCCCTTTAAAA
GGGGATGAGAGGGGTAAGGAGGTCCTCGACCTTGGGAGGAGATGA
back to top
Synonyms
Publications