rna8498, rna8498 (mRNA) Nannochloropsis gaditana

Overview
Namerna8498
Unique Namerna8498
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length752
Alignment locationKK037249.1:107857..109089 +

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Properties
Property NameValue
ProductInitiation factor eIF-4 gamma, MA3
Orig transcript idgnl|cribi|Naga_102031g1.6583.mrna
Orig protein idgnl|cribi|Naga_102031g1.6583
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:107857..109089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102031g1gene8237Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8498rna8498-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22202.1cds8471Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8498 ID=rna8498|Name=rna8498|organism=Nannochloropsis gaditana|type=mRNA|length=752bp
GGCACACGTGCTCGTGTCTAACGAAGGCAGTGAAGAGGCAGAGCGCAGAC
ATCACATTTTGACCACAGAGGCCTGTAGAGAGACTTGGTGACAGTAATTG
GTGTGATTGAGGTGGGAAAAGGCGCACATGAATTATCATATGGCCGTTCA
TTGAAGTGCCCTCTATCCAGAACGTGTGCGTGTTGAACAGACCAAACACC
ACTCTCAACATACCCCACTTGTCCGTCATGCCACAGGACAAAGCAGCCCT
ATATGCTCTTGAATCAGTAAGACACCCGACGCCTTGCCATTTGTAGGTTC
CACGCCAAAAAGGCAGGAAGAGAAAGCAGCAACAGAGAGCTAGACATGAG
CACGTGGCAGCGTGACCCGGACCCCGAAATACAGGCCGAAGCCGAGGTCG
TGGCCGAGGGCAGAAGCCGGGCTCGAAGCGGGAGTGGTGGCTCACACAAA
GGCGTGGGAAAAGGGACAGAGGGGGTGGAATCAGTGGACGGATCAGCCAA
ACGTAATATAACCCGGAAAGGCAAGGATCCAGTCCGGGAGAAGAAACAAG
GCGGGGGCCACAAAGGGCATTGGGCGGCAACGGACGACGGGAGCCTCCTC
TTGGCCCCTGGCTGCCTGGACAAGCATGATCCCAACTACGACAGCGCGGT
AGGAAGGGAGGGACGTGCGGTTGAGAAAAGAAAGGTGGTTTTTAGGGGTC
GGATGCCCTGTGCAGGGCCGTGACGCTTCTTCAGGATCTGACCTGTCTTC
CT
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protein sequence of rna8498

>rna8498-protein ID=rna8498-protein|Name=rna8498|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MTRSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLST
ADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPL
VLGLGGEMVEHAKLLLSRDHMGARCVQDEKREGGKGRGLS
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mRNA from alignment at KK037249.1:107857..109089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8498 ID=rna8498|Name=rna8498|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp|location=Sequence derived from alignment at KK037249.1:107857..109089+ (Nannochloropsis gaditana)
CTCgtttcctgccccctccctcaggcccgCTTGGCCGACGCCCTCAAGGA
GTACTTCGTCTCTGAAGACCTGGAGGAAATGACGCGATCGATAAGCGAGA
TGGACGCCAGGCTCTACCACTACGAGCTCGTGAAGCGGTGCGTCTGCTTa
ttcccgcccgtcctccctccctccctccctccctccctccctcctctatc
TCCTTCAGCTCGCCTTGTCTCCTCTTTCGAAGCCGTGCACACGTTCCCCT
TTCTCTAAAcattctcccccttcctcgtctccttcctccctcttctctcc
ctctctccctcccttcctccctccctccctcccttcttccctccctctcc
agcgCCATCTCCATGTCCCTAGACGGGCGAGAGCGGGAACGGGAGCTGGT
CTCCCGCCTGCTATCTGCCCtttacccttccctcctttccaccgccGACG
TGGGCAAGGGCTTCGAACGCCTCTTTGAGGTGGTGGATGATCTGCAGGTG
GACGTTCCGAGgtaaggagaggaaaggggggaagggaggccaaggaggga
gggagggagggcgcacGTGTTACGCTTGTCGTCTCTTTGGCGCATTTCTT
GCCTTTTTATTATGtcgttctttccctcctccttctttccccattTATCC
TTGGCCCATCCccatccctcttctcttttttgctccctttccctctcgta
ccccccccccccttgcatgccaaccctttcccctcctcccctcgctccct
ccctcccctcccccccggggccctGCGCGCAGTGCCGTCCGAGACATCGC
TACCTTCCTTGCCCGAGCCGTCGTGGAcgagctcctccctccctccttcc
tctcggacCCCTTGGTTCTGGGTCTGGGCGGGGAGATGGTCGAGCACgcc
aagctcctcctctcccgggacCACATGGGCGCGCGGTGCGTGCAGGatga
gaaaagggagggtgggaagggtcGAGGACTctcgtgagggagggatgagg
gtTTGTGCGCCCAACCCTGTTGGCGATGATGTGGCCCAAGGCTCGGCggt
gcccctcctttctcctctgcccccccggcctgTCCCCGCTGAGCTCTCTC
CCCGCTGAGCttctcttcacctccctccctcgttccctccctcgttccct
ccctcgttccctccctctttctccccttttttccctccctctttccctcc
ctctttccctccctctttctccccctcttttcc
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Coding sequence (CDS) from alignment at KK037249.1:107857..109089+

>rna8498 ID=rna8498|Name=rna8498|organism=Nannochloropsis gaditana|type=CDS|length=1269bp|location=Sequence derived from alignment at KK037249.1:107857..109089+ (Nannochloropsis gaditana)
ATGACGCGATCGATAAGCGAGATGGACGCCAGGCTCTACCACTACGAGCT
CGTGAAGCGcgCCATCTCCATGTCCCTAGACGGGCGAGAGCGGGAACGGG
AGCTGGTCTCCCGCCTGCTATCTGCCCtttacccttccctcctttccacc
gccGACGTGGGCAAGGGCTTCGAACGCCTCTTTGAGGTGGTGGATGATCT
GCAGGTGGACGTTCCGAGTGCCGTCCGAGACATCGCTACCTTCCTTGCCC
GAGCCGTCGTGGAcgagctcctccctccctccttcctctcggacCCCTTG
GTTCTGGGTCTGGGCGGGGAGATGGTCGAGCACgccaagctcctcctctc
ccgggacCACATGGGCGCGCGGTGCGTGCAGGatgagaaaagggagggtg
ggaagggtcGAGGACTctcgtgaATGACGCGATCGATAAGCGAGATGGAC
GCCAGGCTCTACCACTACGAGCTCGTGAAGCGcgCCATCTCCATGTCCCT
AGACGGGCGAGAGCGGGAACGGGAGCTGGTCTCCCGCCTGCTATCTGCCC
tttacccttccctcctttccaccgccGACGTGGGCAAGGGCTTCGAACGC
CTCTTTGAGGTGGTGGATGATCTGCAGGTGGACGTTCCGAGTGCCGTCCG
AGACATCGCTACCTTCCTTGCCCGAGCCGTCGTGGAcgagctcctccctc
cctccttcctctcggacCCCTTGGTTCTGGGTCTGGGCGGGGAGATGGTC
GAGCACgccaagctcctcctctcccgggacCACATGGGCGCGCGGTGCGT
GCAGGatgagaaaagggagggtgggaagggtcGAGGACTctcgtgaATGA
CGCGATCGATAAGCGAGATGGACGCCAGGCTCTACCACTACGAGCTCGTG
AAGCGcgCCATCTCCATGTCCCTAGACGGGCGAGAGCGGGAACGGGAGCT
GGTCTCCCGCCTGCTATCTGCCCtttacccttccctcctttccaccgccG
ACGTGGGCAAGGGCTTCGAACGCCTCTTTGAGGTGGTGGATGATCTGCAG
GTGGACGTTCCGAGTGCCGTCCGAGACATCGCTACCTTCCTTGCCCGAGC
CGTCGTGGAcgagctcctccctccctccttcctctcggacCCCTTGGTTC
TGGGTCTGGGCGGGGAGATGGTCGAGCACgccaagctcctcctctcccgg
gacCACATGGGCGCGCGGTGCGTGCAGGatgagaaaagggagggtgggaa
gggtcGAGGACTctcgtga
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Synonyms
Publications