EWM22202.1, cds8471 (CDS) Nannochloropsis gaditana

Overview
NameEWM22202.1
Unique Namecds8471
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:107935..107993 +
Alignment locationKK037249.1:108209..108367 +
Alignment locationKK037249.1:108639..108843 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22202.1
ProductInitiation factor eIF-4 gamma, MA3
Orig transcript idgnl|cribi|Naga_102031g1.6583.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:107935..107993 +
KK037249.1supercontigKK037249.1:108209..108367 +
KK037249.1supercontigKK037249.1:108639..108843 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR016021MIF4-like_typ_1/2/3
IPR003891Initiation_fac_eIF4g_MI
Homology
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|585102645|gb|EWM22202.1| (Initiation factor eIF-4 gamma, MA3 [Nannochloropsis gaditana])

HSP 1 Score: 275.789 bits (704), Expect = 1.094e-93
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MTRSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGARCVQDEKREGGKGRGLS 140
            MTRSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGARCVQDEKREGGKGRGLS
Sbjct:    1 MTRSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGARCVQDEKREGGKGRGLS 140
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|298712350|emb|CBJ33138.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 145.976 bits (367), Expect = 2.153e-39
Identity = 69/122 (56.56%), Postives = 96/122 (78.69%), Query Frame = 0 
Query:    3 RSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGAR 124
            RS+ E+ +  YHYE+VKR I+MS+D ++ ERELVS+LLS  YP +LS+ +V KGFERLFE++DD+Q+D P+A   +A+FLARAV DE++PPS L +   L LGGE+V+ A+ LLSRDH+ +R
Sbjct:  133 RSVKELKSPAYHYEIVKRGINMSIDAKDHERELVSKLLSDAYPDILSSREVCKGFERLFEMIDDIQLDAPNARTLVASFLARAVADEIIPPSVLRNAAFLSLGGEIVKGARRLLSRDHVLSR 254

HSP 2 Score: 64.6994 bits (156), Expect = 1.441e-9
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 0 
Query:    5 ISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPS-LLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSF 95
            + E+D  L+H+E+VKRA+  +LD  + +R  +S LL+ L  + ++S     KGF+RL E++ DL +D P+A   +  F  +A+ D  LP  +
Sbjct:  294 VKELDCSLFHHEIVKRAVKAALDKTDDDRTAMSSLLAYLNKNEVISDEQSKKGFDRLHEILPDLVLDTPAAPSLLTKFTQQAISDGCLPADY 385
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|1210528612|dbj|GAX12809.1| (hypothetical protein FisN_15Hh288 [Fistulifera solaris])

HSP 1 Score: 122.865 bits (307), Expect = 1.896e-30
Identity = 59/122 (48.36%), Postives = 87/122 (71.31%), Query Frame = 0 
Query:    3 RSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGAR 124
            R++ E+  + YH E+VK+A+S++LD   R REL SRLL+ L+P+ ++ +D+  GFE+L + ++DLQ DVP A   +A+FLARAVVDE+LPP+F+SD      G  ++E A  LLSR+H  AR
Sbjct:  176 RTLEELGCQEYHSEIVKKAVSLALDKSSRSRELTSRLLTCLHPTPMTMSDMTTGFEKLLDSMEDLQTDVPDAATIVASFLARAVVDEVLPPAFMSDQNNNRPGDVVIEKALTLLSREHCTAR 297
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|1210515953|dbj|GAX25160.1| (hypothetical protein FisN_15Lh288 [Fistulifera solaris])

HSP 1 Score: 122.479 bits (306), Expect = 2.585e-30
Identity = 59/122 (48.36%), Postives = 87/122 (71.31%), Query Frame = 0 
Query:    3 RSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGAR 124
            R++ E+  + YH E+VK+A+S++LD   R REL SRLL+ L+P+ ++ +D+  GFE+L + ++DLQ DVP A   +A+FLARAVVDE+LPP+F+SD      G  ++E A  LLSR+H  AR
Sbjct:  164 RTLEELGCQEYHSEIVKKAVSLALDKSSRSRELTSRLLTCLHPTPMTMSDMTTGFEKLLDSMEDLQTDVPDAATIVASFLARAVVDEVLPPAFMSDQNNNRPGDLVIEKALTLLSREHCTAR 285
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|676388779|ref|XP_009037668.1| (hypothetical protein AURANDRAFT_11348, partial [Aureococcus anophagefferens] >gi|323451799|gb|EGB07675.1| hypothetical protein AURANDRAFT_11348, partial [Aureococcus anophagefferens])

HSP 1 Score: 117.472 bits (293), Expect = 1.148e-29
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 0 
Query:    4 SISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDH 120
            S+ E+    + +E+VKR +S ++D R RE ELVSRLLSA  P+LL   DV KGFERLFE +DDL +D P A   +  FL R VVDE LPP++L D + + LGG++V  A+ LLSR+H
Sbjct:   31 SLVELSCPEFGFEVVKRGVSKAVDRRARECELVSRLLSAACPALLQPRDVAKGFERLFEAMDDLVLDAPRAPLVVGDFLVRCVVDEALPPAYLGDRVFVALGGDIVARARRLLSREH 147
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|1072231057|gb|OEU15790.1| (MA3-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 117.857 bits (294), Expect = 1.279e-28
Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = 0 
Query:    3 RSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGAR 124
            RSI E+  + YH ++VK+AIS+SLD   RERELVSRLL+ L+P+ L+   + +GF  L + +DDL  DVP A   +A FLARAVVDE+LPP+FLS+      G  ++E A  LLSR+H  AR
Sbjct:  186 RSIEELKCKEYHPDVVKKAISISLDKHPRERELVSRLLTCLHPAPLTDQCMEEGFNILLDSLDDLTTDVPDAKTMVANFLARAVVDEVLPPAFLSEQNNKRPGDIVIEKAISLLSREHCTAR 307
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|219129505|ref|XP_002184928.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403713|gb|EEC43664.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 117.087 bits (292), Expect = 3.220e-28
Identity = 62/136 (45.59%), Postives = 90/136 (66.18%), Query Frame = 0 
Query:    3 RSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGARCVQDEKREGGKGRG 138
            R++ E+  + +H+E+VK+AIS+++D   REREL SRLL+ L+P+ LS   +  GF  L + VDDL  DVP A   +A+FLARAVVDE+LPP++LS+   + +G  ++  A  LLSR+H  AR     +R  G G G
Sbjct:  183 RTLEELGCQEFHHEIVKKAISLAMDNSSRERELTSRLLTCLHPTPLSMEHMEAGFNLLLDSVDDLSTDVPEAETMVASFLARAVVDEVLPPAYLSEQNNVRVGDMVIAKAVALLSREHCTARL----ERVWGPGDG 314
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|397607052|gb|EJK59532.1| (hypothetical protein THAOC_20224 [Thalassiosira oceanica])

HSP 1 Score: 116.316 bits (290), Expect = 5.658e-28
Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 0 
Query:    1 MTRSISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGAR 124
            + R I EM    YH E+VKRA+S+ LD   RERELVSRLL+ L+P  L+  ++G GFE L + +DDL +D+P A   +  FLARAVVDE+L P+FLSD      G  +VE A  LLSR+H  AR
Sbjct:  182 VVRCIHEMKCNEYHPEVVKRAVSLGLDEGPRERELVSRLLACLHPVPLTDEEMGMGFEVLLDSIDDLVIDIPDAKSMVGCFLARAVVDEVLAPAFLSDRNNSHPGDCVVEKAVSLLSREHCTAR 305
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|570329537|gb|ETO77485.1| (hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 115.161 bits (287), Expect = 8.824e-28
Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = 0 
Query:    4 SISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGARCVQDEKREG-GKGR 137
            S++++D   ++YE+VKRAI+M++D  ++EREL SRLLSALY   L+   V  GF R+  +  DLQ+D+P+A   +A F ARAVVDE+LPPSFL DP +     E+   A   LS +H  AR    EK  G G GR
Sbjct:  146 SLNDLDEPEFNYEVVKRAITMAMDKNDKERELASRLLSALYLDGLTAGQVIMGFRRVLLLAGDLQIDIPTAKNMLAIFCARAVVDEILPPSFLEDPFITRYAPEIAAEAIKKLSINHATARM---EKAWGPGDGR 277

HSP 2 Score: 58.151 bits (139), Expect = 3.500e-7
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 0 
Query:    3 RSISEMDARLYHYELVKRAISMSLD-GRERERELVSRLLSALYPS-LLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSF 95
            R + E++   +H+E+VKR I+ SL+ G E     ++ LL+ L  + ++ST  + KGFER   V+DD+ +D+P+A       +AR + D +LP  F
Sbjct:  304 RCVRELNVPHFHHEVVKRGITNSLEEGGEANSAAMASLLAYLVSNEVVSTGQLIKGFERFKFVLDDVALDIPNAAALFKDIVARGISDGILPKDF 398
[Close]
BLAST of EWM22202.1 vs. NCBI_GenBank
Match: gi|570329536|gb|ETO77484.1| (hypothetical protein F444_07332 [Phytophthora parasitica P1976])

HSP 1 Score: 115.161 bits (287), Expect = 9.336e-28
Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = 0 
Query:    4 SISEMDARLYHYELVKRAISMSLDGRERERELVSRLLSALYPSLLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSFLSDPLVLGLGGEMVEHAKLLLSRDHMGARCVQDEKREG-GKGR 137
            S++++D   ++YE+VKRAI+M++D  ++EREL SRLLSALY   L+   V  GF R+  +  DLQ+D+P+A   +A F ARAVVDE+LPPSFL DP +     E+   A   LS +H  AR    EK  G G GR
Sbjct:  148 SLNDLDEPEFNYEVVKRAITMAMDKNDKERELASRLLSALYLDGLTAGQVIMGFRRVLLLAGDLQIDIPTAKNMLAIFCARAVVDEILPPSFLEDPFITRYAPEIAAEAIKKLSINHATARM---EKAWGPGDGR 279

HSP 2 Score: 58.151 bits (139), Expect = 3.372e-7
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 0 
Query:    3 RSISEMDARLYHYELVKRAISMSLD-GRERERELVSRLLSALYPS-LLSTADVGKGFERLFEVVDDLQVDVPSAVRDIATFLARAVVDELLPPSF 95
            R + E++   +H+E+VKR I+ SL+ G E     ++ LL+ L  + ++ST  + KGFER   V+DD+ +D+P+A       +AR + D +LP  F
Sbjct:  306 RCVRELNVPHFHHEVVKRGITNSLEEGGEANSAAMASLLAYLVSNEVVSTGQLIKGFERFKFVLDDVALDIPNAAALFKDIVARGISDGILPKDF 400
The following BLAST results are available for this feature:
BLAST of EWM22202.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102645|gb|EWM22202.1|1.094e-93100.00Initiation factor eIF-4 gamma, MA3 [Nannochloropsi... [more]
gi|298712350|emb|CBJ33138.1|2.153e-3956.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210528612|dbj|GAX12809.1|1.896e-3048.36hypothetical protein FisN_15Hh288 [Fistulifera sol... [more]
gi|1210515953|dbj|GAX25160.1|2.585e-3048.36hypothetical protein FisN_15Lh288 [Fistulifera sol... [more]
gi|676388779|ref|XP_009037668.1|1.148e-2952.14hypothetical protein AURANDRAFT_11348, partial [Au... [more]
gi|1072231057|gb|OEU15790.1|1.279e-2851.64MA3-domain-containing protein [Fragilariopsis cyli... [more]
gi|219129505|ref|XP_002184928.1|3.220e-2845.59predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397607052|gb|EJK59532.1|5.658e-2851.61hypothetical protein THAOC_20224 [Thalassiosira oc... [more]
gi|570329537|gb|ETO77485.1|8.824e-2847.41hypothetical protein, variant [Phytophthora parasi... [more]
gi|570329536|gb|ETO77484.1|9.336e-2847.41hypothetical protein F444_07332 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8498rna8498Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications