rna8494, rna8494 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8494
Unique Name	rna8494
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3110
Alignment location	KK037249.1:98888..99733 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100291g5.3559.mrna
Orig protein id	gnl\|cribi\|Naga_100291g5.3559
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:98888..99733 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100291g5	gene8233	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8494	rna8494-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22208.1	cds8467	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:98888..99733-
coding sequence from alignment at KK037249.1:98888..99733-

mRNA sequence

>rna8494 ID=rna8494|Name=rna8494|organism=Nannochloropsis gaditana|type=mRNA|length=3110bp
TATAGGAGGACGATTGGCGCGAGCCTCGAACCAAGGAAGAGCGGGAAATG
GTCCGGAACTTGCAGTTAGGAGGACAGGCTGCCGACGCAGAGCCTGGGGA
AGTGATTGACATTCGCGGCGGCAGTGTTTACTTCGAGCCCGGGGCGCTTG
GCGGGACCTTCAACGGGATCTACTTCACGTCTGACCAAACCGATGTGGAG
GACATCCTGGTCGCGATCGAGCAGACCACGAACCTGATTGGTATCCGGAT
CTGGGGCGGACACGTCCTTGTCGCCGACGGAGACGTCTCTTTCAATGCGT
GTGTCTTTTATGACTTGGAGCTCCTGACTCCGCTGAGCGACCGAATTTAT
TTCGGGGGAGATGTCCTGGTGCTGGCCGGGATGGTCCGGTTCACAGGATG
CCATTGGTTCTACTTCACCGTTATCGGCGCGGAGAACGGTCTAGGCTTCA
ACACGGCCGTCTTTGGCGGTGTAGCTATCTACACGGGATGCTCCTTCCAG
GAGGCCAACGCCGTCTCCGCTTTCAATGGGGTGGGCCAAGCCTTCTTTGT
AGGAGGAGGCGTGCAAGTCGTCACCGGCTGCAGCTTCTCCTATTTCTCTG
CGGTGGAGATCTTCACGGGGACAGGGGAGTTGACCGTCCTGGCAGGTGTG
CAGATCATCACAGGCGTGCCCTGGTCCGAGTGGTACGGTGTCTTTGCCTA
CTTTGGGGCTGGTCTTGACTACTGTGTGGGGGCAGGCGTGCTGATTTTGA
CAGGAGCCCCGCTGAATCAGTGGAGCGGGCCCATCTGGGGCAGCGTGGCG
GGCGACTACTTCTTTGTGGGTGCAGGTACCTTCTCCTCGCACGGCTCCCC
TGTCGCTCAGTACATGTCGATCGGCGGGGAGGCCGGGAGCGGGTGCTTGG
GCTACGTGGCCACGGGGACGGCTGTCTTGATCGGGGCACCAGTCAATGAT
TTCGCAGGGATCTGGACGACGTTTGGGATCGGAGAATACTACGGTGTCTC
GGCCGGGCTGCTTGTCATGATCGGGTGCCCTATGGTGGAGATCACGGGGA
TTGAGTATTTCCAAGGCTTAGGAGGGGCGGTTTACGTCGGGACTGGGGGT
GCTGTGTTGGGTTATTCTCCCATTCTTGAATTTGTTGCATTAGTGAATGA
GCATTTTGACTTTTGGATCGCGGGTAGTTGTGAGCCGGAGCATGGAGCTT
GGGCGCCTGGAAAGGCTTTCTTTATCCCTGGTGGCATGGGATGTGAAGAA
CACGAGGATCATGACGACCATGACGATCACGACGACCATGACGATCACGA
TGACCACGATGACCACGATCATGTAGAAAGACGCTTTGCCACTCGCCGAC
GCCTGCAGGCTCTGGCGACGGCCCTGCTGGGATCCAACCAGGCCCTGGCG
CCGGGCTTGACCGACCAGTTTGCGGCGGGCGACTTGAGCTTGGTGGCTTT
CAACATTTCCAAGAAAGAACTCGAGTTCGGAAACCCCGCACAGCTCCGGC
CCCTGGCAAAGATCGTCCAGGATCCGCAGATGCTGCTGGCAGCGGGGATG
GGGTTCTCTGAAATGAAGGATGCTCTGGTCAAAGTTGCGCCCGCTTCTCC
CTCGAACCGCACCACCATGTACATCAACGGAGCCCGCGATGGGTATTGCA
GCCTGTGCAACGTAGACAGCGTGAGCGGGCCAGGGCTCTCTTCCTGTGAT
GTTGACGCCTGTGCTGCCCCAGGGAGCGTCGCGGCTCAGGGAGGGCCGGT
CTTGAACGACTACAAGGAGCACTACGTGATCATGGCTGATTTGGACGTGA
CGAGCCGTGGCGACCAGGGAGGGTTAATTGAACCGGAGGTGCAAGAGGCA
GTGGCCAGTCTGCTGGCTCTGGAGGGGGATGGCCTGGAGACGTTGCAGGT
CACCGTGTCTGACACCACCCCGGACTCCCTCTTGAAAGCCACCTTCCAAG
ACGGCCTCCCGGACGGCCACGAACGACGGCGCCTCGCCTTCCACCGGGCG
ATGGCCACTGAATTGTACGACATGACCCAGCGCTTCAAGGTCATGATTGT
GGCGACGAGTAAGGACCGTTCGGAATCTGTTCTAGAACGCCTGCAGCCCT
CCGGTAACGAGGCTCCGTCCCTTCAAAACGGGTTGATCGCCTTCTTCAGC
GACCCTGCGAGCACGGACGTCGGCTCGTTGCAGCTGCTCTATGACCGCAT
GATCTATGTCCCAGCCTACAACACAAGAGGCCTTCTGGACAACGATATGA
ACCTCCCCGGTGGGCAAAGCACGTCATTGGGCACGTTCTCAGTGGCGTTA
CAGGATGCAGAGCAGCCGGCCATCCCCGTCACTTCCGCACATTATGGAGC
CGACAACAACTACGTGGCTAGTCTGGCCCACTTTCCGCCCGGGGCCTCCG
TTGGACTGCGTCTGGTGAAGGTGGGGAGTGGCTTAGGGATGACAGAGGCC
TCCTGGCCCTTGGGGACTGTAAACGTGGACAAGCAAGGGGTGGGGAAGCT
GGCCGTCCAATTCCAGCCTCTGGTGCATCGCGAAGGAGACTACTTCCTGA
AGGCAACTGAGACCAAGTCTGGCATTTACAATTTCTCCCCGGTCTTTTCC
GTGGATAAAGGTGCGCGGCGGCGAAAGATGTATGGGCCCGAAATGTTTTT
TTGAGTAGGGACGAGGCTTTTCAAAACGATTAGCTTCCCAAGCGGAAAGT
ATTGACAATCGAGAGAAAGCACACACAAAAAGTATTATAAAAGAAAAGTT
GTGATTATGTCTGGGGATAATGATCGAGACAGAGGAGAAATAAACTTTAT
TACGATCGCTCGTTATGTCTCATAATTTCCTGCGTAGAGTAGGACTGAAC
TGAACGAGTACTGTGAAAGGAAAGTGGAATAATCTGGATAAGGCAATAGT
ACTTCTAAGCTCTGTATAATTTTTCATCCGGTAACTGCAAAATTATTTGG
TCAACATTGGGGAAGGAGGGTTATGGATGTTTGAGTTCTGTTTGAGTCAA
CTAAGTCATCTCTTTATTCATCCGAAGCTTTTTCTCCGTTTCCTACCTTT
CAAATATGTTGCCTGTGAAGATGTCATCAGAGTAAATGGTAATTTATATT
TAAAAAAATG

protein sequence of rna8494

>rna8494-protein ID=rna8494-protein|Name=rna8494|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MANLRGAGASGNSNNERRNTWIKMGGVALLLLGVVVVAVTLGLERRTDKS
TTPVAFEGPEPSASTVQPAIVTESLAENISKNDKESTTKPLADDSSETLV
DPASTTSSTSNTGNAGTFFEKADELL

mRNA from alignment at KK037249.1:98888..99733-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8494 ID=rna8494|Name=rna8494|organism=Nannochloropsis gaditana|type=mRNA|length=846bp|location=Sequence derived from alignment at KK037249.1:98888..99733- (Nannochloropsis gaditana)
CACAGCTCCCAAGGGAACATTCCATCAGGCTCGCCTTCGAGTACGCCATC
ACTGCTGTCGCCTGCGGAGAGGGACATCGGTACCCTTGCATTCCAAACCT
CGCATGGCGAATCTCAGAGGAGCCGGTGCAAGTGGCAACAGTAACAATGA
AAGAAGAAACACTTGGATCAAGATGGGAGGCGTGGCTTTGTTGCTCTTGG
GTGTCGTAGTCGTCGCTGTCACACTTGGCCTCGAGCGTAGAACGGACAAG
GTGAGTGATGAGTTGAGCTTTAATTACATAAGCCCTTGTAATGGCATGCT
TCATGACGATAGACCGTCGCAATAAGAGCTCAAGTCCTGTATGCTTGACG
TGAGGCATGACTCCTTGAATTGTATGACTTTTTACACAAACAGAGTACCA
CGCCCGTCGCCTTCGAAGGGCCTGAGCCTAGTGCGTCCACCGTCCAGCCT
GCTATTGTCACGGAGTCCTTGGCTGAGAATATCAGCAAGAACGACAAAGA
AAGTACAACGGTACGTGAATGCGTTTGAATACCTTCAATCGGACAATCAG
ATGGTCAACCTAGAGTTTTCAACATGACGCGTTGCCCGAAAAAGCGCCTC
CGGACAAATATACGACAATATGCTGACCTGCGTTGCGTACATAATGTTCA
AAACAGAAACCCCTCGCGGACGATTCTTCAGAAACGCTCGTTGATCCTGC
GTCGACGACGTCCTCGACGAGCAATACTGGCAACGCAGGAACATTTTTTG
AAAAGGCGGACGAGGTGAGTGAAAAAAGAGTTAGGATATCAAGACCTCAT
TTTGCTTACTTCTCGATGGATGCTACTATCGTTCCAGCTCCTCTGA

Coding sequence (CDS) from alignment at KK037249.1:98888..99733-

>rna8494 ID=rna8494|Name=rna8494|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at KK037249.1:98888..99733- (Nannochloropsis gaditana)
CTCCTCTGAAAACCCCTCGCGGACGATTCTTCAGAAACGCTCGTTGATCC
TGCGTCGACGACGTCCTCGACGAGCAATACTGGCAACGCAGGAACATTTT
TTGAAAAGGCGGACGAGAGTACCACGCCCGTCGCCTTCGAAGGGCCTGAG
CCTAGTGCGTCCACCGTCCAGCCTGCTATTGTCACGGAGTCCTTGGCTGA
GAATATCAGCAAGAACGACAAAGAAAGTACAACGATGGCGAATCTCAGAG
GAGCCGGTGCAAGTGGCAACAGTAACAATGAAAGAAGAAACACTTGGATC
AAGATGGGAGGCGTGGCTTTGTTGCTCTTGGGTGTCGTAGTCGTCGCTGT
CACACTTGGCCTCGAGCGTAGAACGGACAAGCTCCTCTGAAAACCCCTCG
CGGACGATTCTTCAGAAACGCTCGTTGATCCTGCGTCGACGACGTCCTCG
ACGAGCAATACTGGCAACGCAGGAACATTTTTTGAAAAGGCGGACGAGAG
TACCACGCCCGTCGCCTTCGAAGGGCCTGAGCCTAGTGCGTCCACCGTCC
AGCCTGCTATTGTCACGGAGTCCTTGGCTGAGAATATCAGCAAGAACGAC
AAAGAAAGTACAACGATGGCGAATCTCAGAGGAGCCGGTGCAAGTGGCAA
CAGTAACAATGAAAGAAGAAACACTTGGATCAAGATGGGAGGCGTGGCTT
TGTTGCTCTTGGGTGTCGTAGTCGTCGCTGTCACACTTGGCCTCGAGCGT
AGAACGGACAAGCTCCTCTGAAAACCCCTCGCGGACGATTCTTCAGAAAC
GCTCGTTGATCCTGCGTCGACGACGTCCTCGACGAGCAATACTGGCAACG
CAGGAACATTTTTTGAAAAGGCGGACGAGAGTACCACGCCCGTCGCCTTC
GAAGGGCCTGAGCCTAGTGCGTCCACCGTCCAGCCTGCTATTGTCACGGA
GTCCTTGGCTGAGAATATCAGCAAGAACGACAAAGAAAGTACAACGATGG
CGAATCTCAGAGGAGCCGGTGCAAGTGGCAACAGTAACAATGAAAGAAGA
AACACTTGGATCAAGATGGGAGGCGTGGCTTTGTTGCTCTTGGGTGTCGT
AGTCGTCGCTGTCACACTTGGCCTCGAGCGTAGAACGGACAAGCTCCTCT
GAAAACCCCTCGCGGACGATTCTTCAGAAACGCTCGTTGATCCTGCGTCG
ACGACGTCCTCGACGAGCAATACTGGCAACGCAGGAACATTTTTTGAAAA
GGCGGACGAGAGTACCACGCCCGTCGCCTTCGAAGGGCCTGAGCCTAGTG
CGTCCACCGTCCAGCCTGCTATTGTCACGGAGTCCTTGGCTGAGAATATC
AGCAAGAACGACAAAGAAAGTACAACGATGGCGAATCTCAGAGGAGCCGG
TGCAAGTGGCAACAGTAACAATGAAAGAAGAAACACTTGGATCAAGATGG
GAGGCGTGGCTTTGTTGCTCTTGGGTGTCGTAGTCGTCGCTGTCACACTT
GGCCTCGAGCGTAGAACGGACAAG

Synonyms

Publications