EWM22208.1, cds8467 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22208.1
Unique Name	cds8467
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037249.1:99484..99630 -
Alignment location	KK037249.1:99224..99340 -
Alignment location	KK037249.1:98970..99077 -
Alignment location	KK037249.1:98888..98896 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22208.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100291g5.3559.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:99484..99630 -
KK037249.1	supercontig	KK037249.1:99224..99340 -
KK037249.1	supercontig	KK037249.1:98970..99077 -
KK037249.1	supercontig	KK037249.1:98888..98896 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

[Close]

BLAST of EWM22208.1 vs. NCBI_GenBank
Match: gi|585102653|gb|EWM22208.1| (hypothetical protein Naga_100291g5 [Nannochloropsis gaditana])

HSP 1 Score: 249.21 bits (635), Expect = 1.056e-83
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 MANLRGAGASGNSNNERRNTWIKMGGVALLLLGVVVVAVTLGLERRTDKSTTPVAFEGPEPSASTVQPAIVTESLAENISKNDKESTTKPLADDSSETLVDPASTTSSTSNTGNAGTFFEKADELL 126
            MANLRGAGASGNSNNERRNTWIKMGGVALLLLGVVVVAVTLGLERRTDKSTTPVAFEGPEPSASTVQPAIVTESLAENISKNDKESTTKPLADDSSETLVDPASTTSSTSNTGNAGTFFEKADELL
Sbjct:    1 MANLRGAGASGNSNNERRNTWIKMGGVALLLLGVVVVAVTLGLERRTDKSTTPVAFEGPEPSASTVQPAIVTESLAENISKNDKESTTKPLADDSSETLVDPASTTSSTSNTGNAGTFFEKADELL 126

[Close]

BLAST of EWM22208.1 vs. NCBI_GenBank
Match: gi|553178295|ref|XP_005852539.1| (hypothetical protein NGA_0727200 [Nannochloropsis gaditana CCMP526] >gi|422295994|gb|EKU23293.1| hypothetical protein NGA_0727200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 243.817 bits (621), Expect = 3.917e-75
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0

Query:    1 MANLRGAGASGNSNNERRNTWIKMGGVALLLLGVVVVAVTLGLERRTDKSTTPVAFEGPEPSASTVQPAIVTESLAENISKNDKESTTKPLADDSSETLVDPASTTSSTSNTGNAGTFFEKADEL 125
            MANLRGAGAS NSNNERRNTWIKMGGVALLLLGVVVVAVTLGLERRTDKSTTPVAFEGPEPSASTVQPAIVTESLAEN+SKNDKESTTKPLADDSSETLVDPASTTSSTSNTGNAGTFFEKADE+
Sbjct:    1 MANLRGAGASDNSNNERRNTWIKMGGVALLLLGVVVVAVTLGLERRTDKSTTPVAFEGPEPSASTVQPAIVTESLAENVSKNDKESTTKPLADDSSETLVDPASTTSSTSNTGNAGTFFEKADEV 125

The following BLAST results are available for this feature:

BLAST of EWM22208.1 vs. NCBI_GenBank

BLAST of EWM22208.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585102653\|gb\|EWM22208.1\|	1.056e-83	100.00	hypothetical protein Naga_100291g5 [Nannochloropsi...	[more]
gi\|553178295\|ref\|XP_005852539.1\|	3.917e-75	97.60	hypothetical protein NGA_0727200 [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8494	rna8494	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications