rna8485, rna8485 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8485
Unique Name	rna8485
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1873
Alignment location	KK037249.1:76854..78091 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100337g4.999.mrna
Orig protein id	gnl\|cribi\|Naga_100337g4.999
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:76854..78091 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100337g4	gene8226	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8485	rna8485-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22217.1	cds8458	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:76854..78091-
coding sequence from alignment at KK037249.1:76854..78091-

mRNA sequence

>rna8485 ID=rna8485|Name=rna8485|organism=Nannochloropsis gaditana|type=mRNA|length=1873bp
TCCGCGGATATCCCAGCTCAAGGACAAACCGTTGCCGGCTTCAGAGGCGA
TTTCTCCCCTTCTCCCTGGCCCTTCCTACACCCACGCCTCCTTGATAGTT
GCCTGGGCACAAAGGACTGATGCATACCATCGCATACATCTTCTTCAAAG
CACAGTATAAAGACGGGCGGCGGTGATGTGTGATTGCTGGGGAGGTTGTC
CTCACTCGCCTTCGCAGCATCGTAGCTGAGGGCTACGGACTGCATGTGCG
CTTGGGAAGCCAAGCGACAATCGCAGCTTCACTCGCAATCAGGACTATCA
GGGGCACAAGAGGAGGTGCGTATCCGACGGCATCGAAAGGAGCCGCATCA
GGATGAGCATTTATGGCAAAAATCGAAAGGAAAGCAGCAAAACATGATGG
CCCGGGAGCCCTGTCTTCCAACCGCGTTAGCCTTACCCCGTTCCTGCTTC
ACCTATACACGGTGTTTTTGCGAGGAAAACGTATACTTGCTTCTCGCCAA
GCTGCACGCCTTAATATCATCTTCGGAAGATCTTTTAGGATGCCAGCTGT
CTGCCTTATTCGTATCAAATTCACTGAAAGCCTGTCCTATCTGGATGCAG
CGTGAAACGGGGGAAGCCTTGGGGAATGCGGATCAAGTAGAGGACAGGGA
GGAAGCGGGGACGGAGGGAAACGAAGAAAATAAAATCGCTGAATTTTCGC
TAAACGACGGGCCAATATTATGGGACTATCACGTCGTCGCGCTTTTAGAG
ACGCCCGGGGGCCTGGCCTATGTCTACGACCTGGACACGCGCCTGGAGCC
CTTCCCTTGCCCGGCCGGAGCGTACGTGAGGAAGGCGTTCAAACCGGACT
TGCCCCTGAGGGAGGAGTACCGACAGCGCTTTCGACGGGTGTCTTTCTCT
CCAGTCCTTCGCGACTGCTTTGCCTCGGATAGATCCCATATGCGGGCATT
GGATGGCTCCTGGACGGTCCCACCGCCCCTATACCCGCCCATACGGGGCG
CCAACTCCGCCTCTGCCATGACCCTGCCTGCCTTTTGGAAGGTGGACGAG
GAAAAGGAAGGAGAGAAGGAGGGCGGGACGGAGGGAAAACTGGGGGAGGT
TTTGTCACTCGGAGACTTGTTGAAACGTATAAAGTAAAGGGGAGAAGAAG
ACTGTGGGTGAAGGTGAGGGTTGGGGATCGGATCAGGGTTCCGACGGGGA
GAGAAGCGTTTAAGCTCCCCAGAACAGAGCGATGACGGGGAGGGCGGCGT
GAGGGAGTGCAGGGTGCCTGTGACATTTTCCATGGTTCGAGGGCATCGGC
AAGGCACAGATGCGTGGGTAATTATTGAAACTGACGGCCGTCGATACACG
TCGAAAGTGAGGAAAGTCTCGGAACATGTTGTTAGAAATGAATGCTGCAA
CGGGTTCAGCAACGTCTGCGAATAGATGGTTGGTATGATGGAGACACCGG
GCAAAGAAGGCAGGGCATGCCCCGTCCCGGGCGTACGGTGGGGGGGACTA
CACAAAGAATACTCAGGCAGGATTTGGGGAGAGGCGGCCTCTCTCCTCTC
TGTGCTGCTTTGCCTGCTTGGGATGGTCCCCTCCGATGCAGGGATTGGAG
GTAAAGCAGGTGGTGGGAGACAAGGGCAACAAAATCACGGATGCAGGCCA
CTCGCGGACTCGTGATCGTGTGTAGGACTTAACACCTTTATATGCCTCTC
TTATGCTCGATCTCAGAGCCCTAACGCAAAAGCGATGCTCGCCCTTCGTC
GCCCGGCCCCTCCTTCGCTCCCTCTTCTCCCTCGCCAGCTCACCCCTTCT
TCCCCCCTTGCACGTCATCATCTTCTTCCATGAACCCCATCACGCTTTCC
CTCAAACAGGGAGGTAGCTTTTC

protein sequence of rna8485

>rna8485-protein ID=rna8485-protein|Name=rna8485|organism=Nannochloropsis gaditana|type=polypeptide|length=251bp
MPFRHAGRPHSCSCDRHFASRWYTPPYPFFPFGHKPPAPPFPFPELLPRA
PPLPSSSREVNPSETIHVASPCQSGCQGQEAAQQAWQEGDHRGERQGSGP
TEDRRRGQRRLGDGASGCIYYQEEELLVLSPEWARHFRERFRACKAGAKR
GKRTREIVQWSHREVDALPPPTARALGKRAFSKRNGHVGREEGEEDEADE
RREEEEEEQAAIGADGERRKALRLEKLPPCLRESVMGFMEEDDDVQGGKK
G

mRNA from alignment at KK037249.1:76854..78091-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8485 ID=rna8485|Name=rna8485|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp|location=Sequence derived from alignment at KK037249.1:76854..78091- (Nannochloropsis gaditana)
ATGCCATTCAGGCATGCAGGGCGACCGCATTCTTGTTCATGCGACAGACA
CTTCGCTTCTCGTTGGTATACTCCCCCATACCCTTTTTTCCCGTTCGGCC
ATAAACCTCCTGCCCCTCCTTTTCCTTTCCCAGGTAAGCGAACCTGGCAT
GAACACGTATACGCTGACACCGCTGCGTTTTTCAAGGAGAAAGGGTCCTC
TGTTTAATCCGTGACAATTCTCACTCCACGTCTCATCACGCTCCGCTATC
TCCTTAGAATTACTCCCGCGGGCTCCACCTTTGCCTTCATCCTCCAGAGA
GGTAAACCCCTCCGAGACGATTCACGTTGCCTCCCCCTGCCAGTCAGGCT
GTCAGGGTCAAGAGGCGGCCCAGCAAGCTTGGCAAGAAGGGGATCACCGG
GGGGAAAGGCAAGGCTCTGGCCCAACCGAGGACAGGAGGAGAGGGCAGCG
GCGCCTTGGGGACGGGGCAAGTGGATGTACGTCGATGAGGGACATGGCGC
AAAGCGTGGCGAACGCATTCCCTGTGCAGAGACCTGGGACGGCGGAAGAT
GGGGAGGCGGGGGACATTGGGGAAGGTACGTGGGCCCGGCTGAAGGGAAA
TGAGGGCCCCATGCCCTGGGGTGAGGCTTTGCCGCGGTTATGAATCTTCT
CGATTCGTTCCTCATCTCTTTTTTATCATCCTTCCAAGGTATCTACTACC
AAGAAGAAGAGCTTCTCGTCCTGTCGCCTGAGTGGGCGCGTCACTTTCGA
GAACGTTTTCGAGCCTGCAAGGCAGGGGCGAAACGGGGTGAGCAGGGGGG
TTAGGGCCCGAGGAATGGGTGCCACAGGGAGACAAGAGGGCCAGTGCGGA
GTCATTTATCATGAGGCGTAGATCTCAAGAGTATAAATGCATCCTTTTCC
TCGACATTCGCCTCTTCCTTGCTTTTTGGACAGGAAAACGCACGCGGGAG
ATCGTCCAGTGGTCACACCGGGAAGTCGACGCCCTCCCTCCCCCCACGGC
ACGGGCTCTGGGAAAGCGAGCCTTCTCAAAGCGGAATGGGCATGTGGGCA
GGGAGGAGGGGGAGGAGGACGAGGCGGACGAGAGGAGGGAGGAGGAGGAG
GAGGAGCAAGCAGCCATCGGGGCCGACGGGGAAAGGAGGAAGGCACTGAG
GTTGGAAAAGCTACCTCCCTGTTTGAGGGAAAGCGTGATGGGGTTCATGG
AAGAAGATGATGACGTGCAAGGGGGGAAGAAGGGGTGA

Coding sequence (CDS) from alignment at KK037249.1:76854..78091-

>rna8485 ID=rna8485|Name=rna8485|organism=Nannochloropsis gaditana|type=CDS|length=3024bp|location=Sequence derived from alignment at KK037249.1:76854..78091- (Nannochloropsis gaditana)
GAAAACGCACGCGGGAGATCGTCCAGTGGTCACACCGGGAAGTCGACGCC
CTCCCTCCCCCCACGGCACGGGCTCTGGGAAAGCGAGCCTTCTCAAAGCG
GAATGGGCATGTGGGCAGGGAGGAGGGGGAGGAGGACGAGGCGGACGAGA
GGAGGGAGGAGGAGGAGGAGGAGCAAGCAGCCATCGGGGCCGACGGGGAA
AGGAGGAAGGCACTGAGGTTGGAAAAGCTACCTCCCTGTTTGAGGGAAAG
CGTGATGGGGTTCATGGAAGAAGATGATGACGTGCAAGGGGGGAAGAAGG
GGTGAGTATCTACTACCAAGAAGAAGAGCTTCTCGTCCTGTCGCCTGAGT
GGGCGCGTCACTTTCGAGAACGTTTTCGAGCCTGCAAGGCAGGGGCGAAA
CGGGAATTACTCCCGCGGGCTCCACCTTTGCCTTCATCCTCCAGAGAGGT
AAACCCCTCCGAGACGATTCACGTTGCCTCCCCCTGCCAGTCAGGCTGTC
AGGGTCAAGAGGCGGCCCAGCAAGCTTGGCAAGAAGGGGATCACCGGGGG
GAAAGGCAAGGCTCTGGCCCAACCGAGGACAGGAGGAGAGGGCAGCGGCG
CCTTGGGGACGGGGCAAGTGGATATGCCATTCAGGCATGCAGGGCGACCG
CATTCTTGTTCATGCGACAGACACTTCGCTTCTCGTTGGTATACTCCCCC
ATACCCTTTTTTCCCGTTCGGCCATAAACCTCCTGCCCCTCCTTTTCCTT
TCCCAGGAAAACGCACGCGGGAGATCGTCCAGTGGTCACACCGGGAAGTC
GACGCCCTCCCTCCCCCCACGGCACGGGCTCTGGGAAAGCGAGCCTTCTC
AAAGCGGAATGGGCATGTGGGCAGGGAGGAGGGGGAGGAGGACGAGGCGG
ACGAGAGGAGGGAGGAGGAGGAGGAGGAGCAAGCAGCCATCGGGGCCGAC
GGGGAAAGGAGGAAGGCACTGAGGTTGGAAAAGCTACCTCCCTGTTTGAG
GGAAAGCGTGATGGGGTTCATGGAAGAAGATGATGACGTGCAAGGGGGGA
AGAAGGGGTGAGTATCTACTACCAAGAAGAAGAGCTTCTCGTCCTGTCGC
CTGAGTGGGCGCGTCACTTTCGAGAACGTTTTCGAGCCTGCAAGGCAGGG
GCGAAACGGGAATTACTCCCGCGGGCTCCACCTTTGCCTTCATCCTCCAG
AGAGGTAAACCCCTCCGAGACGATTCACGTTGCCTCCCCCTGCCAGTCAG
GCTGTCAGGGTCAAGAGGCGGCCCAGCAAGCTTGGCAAGAAGGGGATCAC
CGGGGGGAAAGGCAAGGCTCTGGCCCAACCGAGGACAGGAGGAGAGGGCA
GCGGCGCCTTGGGGACGGGGCAAGTGGATATGCCATTCAGGCATGCAGGG
CGACCGCATTCTTGTTCATGCGACAGACACTTCGCTTCTCGTTGGTATAC
TCCCCCATACCCTTTTTTCCCGTTCGGCCATAAACCTCCTGCCCCTCCTT
TTCCTTTCCCAGGAAAACGCACGCGGGAGATCGTCCAGTGGTCACACCGG
GAAGTCGACGCCCTCCCTCCCCCCACGGCACGGGCTCTGGGAAAGCGAGC
CTTCTCAAAGCGGAATGGGCATGTGGGCAGGGAGGAGGGGGAGGAGGACG
AGGCGGACGAGAGGAGGGAGGAGGAGGAGGAGGAGCAAGCAGCCATCGGG
GCCGACGGGGAAAGGAGGAAGGCACTGAGGTTGGAAAAGCTACCTCCCTG
TTTGAGGGAAAGCGTGATGGGGTTCATGGAAGAAGATGATGACGTGCAAG
GGGGGAAGAAGGGGTGAGTATCTACTACCAAGAAGAAGAGCTTCTCGTCC
TGTCGCCTGAGTGGGCGCGTCACTTTCGAGAACGTTTTCGAGCCTGCAAG
GCAGGGGCGAAACGGGAATTACTCCCGCGGGCTCCACCTTTGCCTTCATC
CTCCAGAGAGGTAAACCCCTCCGAGACGATTCACGTTGCCTCCCCCTGCC
AGTCAGGCTGTCAGGGTCAAGAGGCGGCCCAGCAAGCTTGGCAAGAAGGG
GATCACCGGGGGGAAAGGCAAGGCTCTGGCCCAACCGAGGACAGGAGGAG
AGGGCAGCGGCGCCTTGGGGACGGGGCAAGTGGATATGCCATTCAGGCAT
GCAGGGCGACCGCATTCTTGTTCATGCGACAGACACTTCGCTTCTCGTTG
GTATACTCCCCCATACCCTTTTTTCCCGTTCGGCCATAAACCTCCTGCCC
CTCCTTTTCCTTTCCCAGGAAAACGCACGCGGGAGATCGTCCAGTGGTCA
CACCGGGAAGTCGACGCCCTCCCTCCCCCCACGGCACGGGCTCTGGGAAA
GCGAGCCTTCTCAAAGCGGAATGGGCATGTGGGCAGGGAGGAGGGGGAGG
AGGACGAGGCGGACGAGAGGAGGGAGGAGGAGGAGGAGGAGCAAGCAGCC
ATCGGGGCCGACGGGGAAAGGAGGAAGGCACTGAGGTTGGAAAAGCTACC
TCCCTGTTTGAGGGAAAGCGTGATGGGGTTCATGGAAGAAGATGATGACG
TGCAAGGGGGGAAGAAGGGGTGAGTATCTACTACCAAGAAGAAGAGCTTC
TCGTCCTGTCGCCTGAGTGGGCGCGTCACTTTCGAGAACGTTTTCGAGCC
TGCAAGGCAGGGGCGAAACGGGAATTACTCCCGCGGGCTCCACCTTTGCC
TTCATCCTCCAGAGAGGTAAACCCCTCCGAGACGATTCACGTTGCCTCCC
CCTGCCAGTCAGGCTGTCAGGGTCAAGAGGCGGCCCAGCAAGCTTGGCAA
GAAGGGGATCACCGGGGGGAAAGGCAAGGCTCTGGCCCAACCGAGGACAG
GAGGAGAGGGCAGCGGCGCCTTGGGGACGGGGCAAGTGGATATGCCATTC
AGGCATGCAGGGCGACCGCATTCTTGTTCATGCGACAGACACTTCGCTTC
TCGTTGGTATACTCCCCCATACCCTTTTTTCCCGTTCGGCCATAAACCTC
CTGCCCCTCCTTTTCCTTTCCCAG

Synonyms

Publications