EWM22217.1, cds8458 (CDS) Nannochloropsis gaditana

Overview
NameEWM22217.1
Unique Namecds8458
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:77959..78091 -
Alignment locationKK037249.1:77616..77834 -
Alignment locationKK037249.1:77305..77403 -
Alignment locationKK037249.1:76854..77158 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22217.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100337g4.999.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:77959..78091 -
KK037249.1supercontigKK037249.1:77616..77834 -
KK037249.1supercontigKK037249.1:77305..77403 -
KK037249.1supercontigKK037249.1:76854..77158 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22217.1 vs. NCBI_GenBank
Match: gi|585102665|gb|EWM22217.1| (hypothetical protein Naga_100337g4 [Nannochloropsis gaditana])

HSP 1 Score: 506.138 bits (1302), Expect = 0.000e+0
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0 
Query:    1 MPFRHAGRPHSCSCDRHFASRWYTPPYPFFPFGHKPPAPPFPFPELLPRAPPLPSSSREVNPSETIHVASPCQSGCQGQEAAQQAWQEGDHRGERQGSGPTEDRRRGQRRLGDGASGCIYYQEEELLVLSPEWARHFRERFRACKAGAKRGKRTREIVQWSHREVDALPPPTARALGKRAFSKRNGHVGREEGEEDEADERREEEEEEQAAIGADGERRKALRLEKLPPCLRESVMGFMEEDDDVQGGKKG 251
            MPFRHAGRPHSCSCDRHFASRWYTPPYPFFPFGHKPPAPPFPFPELLPRAPPLPSSSREVNPSETIHVASPCQSGCQGQEAAQQAWQEGDHRGERQGSGPTEDRRRGQRRLGDGASGCIYYQEEELLVLSPEWARHFRERFRACKAGAKRGKRTREIVQWSHREVDALPPPTARALGKRAFSKRNGHVGREEGEEDEADERREEEEEEQAAIGADGERRKALRLEKLPPCLRESVMGFMEEDDDVQGGKKG
Sbjct:    1 MPFRHAGRPHSCSCDRHFASRWYTPPYPFFPFGHKPPAPPFPFPELLPRAPPLPSSSREVNPSETIHVASPCQSGCQGQEAAQQAWQEGDHRGERQGSGPTEDRRRGQRRLGDGASGCIYYQEEELLVLSPEWARHFRERFRACKAGAKRGKRTREIVQWSHREVDALPPPTARALGKRAFSKRNGHVGREEGEEDEADERREEEEEEQAAIGADGERRKALRLEKLPPCLRESVMGFMEEDDDVQGGKKG 251
[Close]
BLAST of EWM22217.1 vs. NCBI_GenBank
Match: gi|553183648|ref|XP_005853935.1| (hypothetical protein NGA_0461200 [Nannochloropsis gaditana CCMP526] >gi|422295125|gb|EKU22424.1| hypothetical protein NGA_0461200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.5514 bits (166), Expect = 8.877e-12
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 0 
Query:   99 GPTEDRRRGQRRLGDGASGCIYYQEEELLVLSPEWARHFRERFRACKAGAKRGKR 153
            G  ED   G   +G+G    IYYQEEELLVLSPEWARHFRERFRA KAGAKRG++
Sbjct:   15 GTAEDGEAGD--IGEG----IYYQEEELLVLSPEWARHFRERFRARKAGAKRGEQ 63
The following BLAST results are available for this feature:
BLAST of EWM22217.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102665|gb|EWM22217.1|0.000e+0100.00hypothetical protein Naga_100337g4 [Nannochloropsi... [more]
gi|553183648|ref|XP_005853935.1|8.877e-1269.09hypothetical protein NGA_0461200 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8485rna8485Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications