rna8483, rna8483 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8483
Unique Name	rna8483
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	973
Alignment location	KK037249.1:69953..71902 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100337g6.994.mrna
Orig protein id	gnl\|cribi\|Naga_100337g6.994
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:69953..71902 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100337g6	gene8224	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8483	rna8483-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22212.1	cds8456	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:69953..71902-
coding sequence from alignment at KK037249.1:69953..71902-

mRNA sequence

>rna8483 ID=rna8483|Name=rna8483|organism=Nannochloropsis gaditana|type=mRNA|length=973bp
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTATGGTA
TGCCTCCCATCCCATATGCCCTGTAACTTCCCGCCTCCCTCCCTCCCTCT
TGTCCCAGATACCAACGACAACTTTGGCCGGATATTTGAACGAGAATTCT
GGTCCGTGGTCGGCCACAACGTCAAGGACGGCTACCTGTTGGATAGCTGC
GCCAAACATTGCGGGTCTTGGTCGTCGGTGCGAAGCGAGGAGGGGATGAC
ACAACAGGAGGCCTTCCAACAGTGGTACGACTCACTTGGGCCTTCGGTAC
GCGTCTCTCCCAACTCCACCGTCGCCAAGATCAATGAGGAAGTGGTGGAG
CAGCAGCGGGCCTATCTGGTCGCAGAAGATGATCGGAGGCTGGCAGTTGG
AGATGCTGACAGTCTCAGCCCCGTGGAAGAGCTCCGTCGTTATATCTCCT
CCTTGGCATCGAAGCAGTCCTCCTTCCTGGAGGACGCTCTGTCCATTTTT
CGGTTCAACAACACGGGACATTTTCCATGCGATGCTTGTTGTGAGGGCGA
ATCAGAGAAAAGGAGGACTTGGGGGCATGAGGACCAAAAACACTTGAATA
CAAAAATGAGGGGGGCCGTCACTGCTGCTTCCCTCCGGGTACAGCGGAGG
GGAAAGGCAAAGGAAGGCAGGGAGGCGGTGAAAATGAATGTTTTGGGGAA
CATGGATCTCTTGTGATAAGTAGGACATGGCAGTCATGAGACATCTGATG
TGATGAGACGTGAAAGAAAGAAGGATGAGTCGTGGTGGGTTTAAGCGTTA
GCGGGCAGGCGGGCAGACGATGGCATTTTGGAAAATTAGGACGGAAAAAT
AAATAAAATGTTTAAATAGTTCATGATACAGAAGCTCTCGGCGGGCATAC
GATGGCATATTGGAATATCGAAAAGGAAAAAAAACATAATTTAGAATACT
TCATGCTTAAAGAACTCGCACTC

protein sequence of rna8483

>rna8483-protein ID=rna8483-protein|Name=rna8483|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MLQGRWKAPRRGPLNLLFGCLLLCMGIRLQPTHAEGHETVFVPGIWLDDE
RAKCLDGSKPVYYHRPGWGDGARKWILFYEGGGWCADKHECYDRAKTHLG
SSHTYEDTMALEWDMVSSDPETNPGLHNWNVVFVKYCDGNFWSGATMDTE
EMHDLRLHFRGKFIQEAIMRDLTDFMGLDKGEELVFAGCSAGAMIAYLQV
DYWAASGLIPPSIRKVRVMASAVGRRSGGGTCRGRLVFPTLWRKKSLLR

mRNA from alignment at KK037249.1:69953..71902-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8483 ID=rna8483|Name=rna8483|organism=Nannochloropsis gaditana|type=mRNA|length=1950bp|location=Sequence derived from alignment at KK037249.1:69953..71902- (Nannochloropsis gaditana)
CGGACACATTACGATACCTGACAGGGACAATACTTTTTGTGCAGTGTACA
TTCACATTCAAGCTGTCTTGGTGTTTTAGCTAATCCATACCTGCGACTAT
GCTGCAAGGAAGATGGAAAGCGCCAAGAAGAGGACCTCTCAATTTGTTGT
TTGGGTGCCTTTTGCTTTGTATGGGAATAAGACTGCAGCCTACGCACGCG
GAAGGGCATGAAACTGTCTTTGTTCCAGGAATTTGGTTGGATGACGAGAG
GGCTAAGTGCCTGGATGGCTCCAAACCAGGTTAGTAGGCAGGGCACCTGG
CTGACGCACAGTAGGAAAAAATATCATGACTCAAGGCACACCCACTTCTT
ACCCTACAATTTGATACTTTGACATATTTTCTGCAGTATATTATCATCGA
CCAGGATGGGGAGACGGTGCTCGGAAATGGATTCTCTTTTACGAAGGTTA
GCTGGCCGTTTTTCGTACACTGTGCTTTTTGACGCAAAGTCGATGCTTAC
GAATTCTTTCTCCATCAACATACGCCACATTTTTTGGCTGAATAAAATTC
AATAGGTGGAGGATGGTGCGCTGACAAGCATGAGTGCTATGACCGTGCCA
AAACTCACTTGGGCTCCAGTCACACTTACGAAGATACGATGGGTGAGAAG
GGAGGCGTGCGTGATTGATTCGGGGGGGGGGGGGAAAGGGGAGGGGACGA
GGAATCTGTGTCGGAGATTCGGTTGAGAATGAGCGGGTTGGCAGGGCTTG
ATAGAAATAGTCCGTGCTTGGAGAATGCCGGCGTGTATACGTGGAAATGG
GTCCGAGACCCGGAACGCATGAGGAGGTTGATGGAGGCCTGCGAGCTTAC
ACCCACGGTTCCCGCCCCGCCTTCCCCTCGGTAGCCTTGGAATGGGATAT
GGTCTCGAGTGACCCAGAGACGAATCCAGGCCTGCATAATTGGAACGTTG
TTTTCGTCAAGGTAGGGAAAAGGCTTGAACACAGGAGACTTCTGATCTCT
CTTCGGCTTTAGGCTTCGAAGAGGGGTCTCAATTCGAGTAGATTGGGAAA
ATAGGACCGACGGAATACTGAAGGTACTGCTTTTTTACTCATAGCGGACT
CCATCATTATCTCCTACAGTACTGCGATGGAAACTTCTGGTCGGGTGCTA
CGATGGATACCGAAGAGGTAAAGGATTGAGGGAGGAGCAGGGAGGAGCAG
GAGAGGTGGAGGACTGAGGGTGGAAATAAAAATGAAGAGGGAGAGAAAGA
CTTTTTTTGGGCCATTGAACATTTGCGTCGCAAATGCGGGACAGACGAAG
GACAGAGAGGATGTGGTGGTCCTGGCGCGGCCTCATTTTTGTGTTTTGAT
TTGTCTCTTTTCATATGTTTCCGTGTTGGAACTGCTAGATGCACGACCTC
AGGTTGCATTTTCGAGGAAAATTCATCCAAGAGGCCATCATGAGAGACTT
GACAGACTTCATGTAAGGACTCGCCCAAGAGAGGCAGGGGAAGGAAGAGG
GAGGGGCAGGAAGGAGAAGGGAGGGAGGGTGGGAAGAGAGGAGGACAGGC
AAAAGGGAGTGAGAAAGGGAGGGAGGGAGGCGCCATGCACCGGAGAAATC
CGATCAATCTTTGATTCCTATGCCTGCAACTTCCTTGGCAGACATTGGAA
AAGGCGTCTGATGTCCTCTGGTCCGGCATTTCTCATGTCTCAATTCCCCT
TCTTCGCTCCCGTCTCTCGGTCGTCAGGGGTCTCGACAAGGGAGAAGAGC
TTGTCTTCGCCGGCTGCTCAGCAGGAGCCATGATAGCCTACCTCCAGGTT
GATTATTGGGCCGCATCGGGGCTTATCCCTCCATCTATTCGCAAGGTAAG
GGTCATGGCTAGTGCCGTCGGACGAAGAAGCGGCGGCGGAACTTGTCGTG
GGAGGCTTGTCTTTCCAACGCTCTGGAGGAAGAAATCGCTGCTTCGTTGA

Coding sequence (CDS) from alignment at KK037249.1:69953..71902-

>rna8483 ID=rna8483|Name=rna8483|organism=Nannochloropsis gaditana|type=CDS|length=5250bp|location=Sequence derived from alignment at KK037249.1:69953..71902- (Nannochloropsis gaditana)
GGGTCTCGACAAGGGAGAAGAGCTTGTCTTCGCCGGCTGCTCAGCAGGAG
CCATGATAGCCTACCTCCAGGTTGATTATTGGGCCGCATCGGGGCTTATC
CCTCCATCTATTCGCAAGGTAAGGGTCATGGCTAGTGCCGTCGGACGAAG
AAGCGGCGGCGGAACTTGTCGTGGGAGGCTTGTCTTTCCAACGCTCTGGA
GGAAGAAATCGCTGCTTCGTTGAATGCACGACCTCAGGTTGCATTTTCGA
GGAAAATTCATCCAAGAGGCCATCATGAGAGACTTGACAGACTTCATTAC
TGCGATGGAAACTTCTGGTCGGGTGCTACGATGGATACCGAAGAGCCTTG
GAATGGGATATGGTCTCGAGTGACCCAGAGACGAATCCAGGCCTGCATAA
TTGGAACGTTGTTTTCGTCAAGGTGGAGGATGGTGCGCTGACAAGCATGA
GTGCTATGACCGTGCCAAAACTCACTTGGGCTCCAGTCACACTTACGAAG
ATACGATGGTATATTATCATCGACCAGGATGGGGAGACGGTGCTCGGAAA
TGGATTCTCTTTTACGAAGATGCTGCAAGGAAGATGGAAAGCGCCAAGAA
GAGGACCTCTCAATTTGTTGTTTGGGTGCCTTTTGCTTTGTATGGGAATA
AGACTGCAGCCTACGCACGCGGAAGGGCATGAAACTGTCTTTGTTCCAGG
AATTTGGTTGGATGACGAGAGGGCTAAGTGCCTGGATGGCTCCAAACCAG
GGGTCTCGACAAGGGAGAAGAGCTTGTCTTCGCCGGCTGCTCAGCAGGAG
CCATGATAGCCTACCTCCAGGTTGATTATTGGGCCGCATCGGGGCTTATC
CCTCCATCTATTCGCAAGGTAAGGGTCATGGCTAGTGCCGTCGGACGAAG
AAGCGGCGGCGGAACTTGTCGTGGGAGGCTTGTCTTTCCAACGCTCTGGA
GGAAGAAATCGCTGCTTCGTTGAATGCACGACCTCAGGTTGCATTTTCGA
GGAAAATTCATCCAAGAGGCCATCATGAGAGACTTGACAGACTTCATTAC
TGCGATGGAAACTTCTGGTCGGGTGCTACGATGGATACCGAAGAGCCTTG
GAATGGGATATGGTCTCGAGTGACCCAGAGACGAATCCAGGCCTGCATAA
TTGGAACGTTGTTTTCGTCAAGGTGGAGGATGGTGCGCTGACAAGCATGA
GTGCTATGACCGTGCCAAAACTCACTTGGGCTCCAGTCACACTTACGAAG
ATACGATGGTATATTATCATCGACCAGGATGGGGAGACGGTGCTCGGAAA
TGGATTCTCTTTTACGAAGATGCTGCAAGGAAGATGGAAAGCGCCAAGAA
GAGGACCTCTCAATTTGTTGTTTGGGTGCCTTTTGCTTTGTATGGGAATA
AGACTGCAGCCTACGCACGCGGAAGGGCATGAAACTGTCTTTGTTCCAGG
AATTTGGTTGGATGACGAGAGGGCTAAGTGCCTGGATGGCTCCAAACCAG
GGGTCTCGACAAGGGAGAAGAGCTTGTCTTCGCCGGCTGCTCAGCAGGAG
CCATGATAGCCTACCTCCAGGTTGATTATTGGGCCGCATCGGGGCTTATC
CCTCCATCTATTCGCAAGGTAAGGGTCATGGCTAGTGCCGTCGGACGAAG
AAGCGGCGGCGGAACTTGTCGTGGGAGGCTTGTCTTTCCAACGCTCTGGA
GGAAGAAATCGCTGCTTCGTTGAATGCACGACCTCAGGTTGCATTTTCGA
GGAAAATTCATCCAAGAGGCCATCATGAGAGACTTGACAGACTTCATTAC
TGCGATGGAAACTTCTGGTCGGGTGCTACGATGGATACCGAAGAGCCTTG
GAATGGGATATGGTCTCGAGTGACCCAGAGACGAATCCAGGCCTGCATAA
TTGGAACGTTGTTTTCGTCAAGGTGGAGGATGGTGCGCTGACAAGCATGA
GTGCTATGACCGTGCCAAAACTCACTTGGGCTCCAGTCACACTTACGAAG
ATACGATGGTATATTATCATCGACCAGGATGGGGAGACGGTGCTCGGAAA
TGGATTCTCTTTTACGAAGATGCTGCAAGGAAGATGGAAAGCGCCAAGAA
GAGGACCTCTCAATTTGTTGTTTGGGTGCCTTTTGCTTTGTATGGGAATA
AGACTGCAGCCTACGCACGCGGAAGGGCATGAAACTGTCTTTGTTCCAGG
AATTTGGTTGGATGACGAGAGGGCTAAGTGCCTGGATGGCTCCAAACCAG
GGGTCTCGACAAGGGAGAAGAGCTTGTCTTCGCCGGCTGCTCAGCAGGAG
CCATGATAGCCTACCTCCAGGTTGATTATTGGGCCGCATCGGGGCTTATC
CCTCCATCTATTCGCAAGGTAAGGGTCATGGCTAGTGCCGTCGGACGAAG
AAGCGGCGGCGGAACTTGTCGTGGGAGGCTTGTCTTTCCAACGCTCTGGA
GGAAGAAATCGCTGCTTCGTTGAATGCACGACCTCAGGTTGCATTTTCGA
GGAAAATTCATCCAAGAGGCCATCATGAGAGACTTGACAGACTTCATTAC
TGCGATGGAAACTTCTGGTCGGGTGCTACGATGGATACCGAAGAGCCTTG
GAATGGGATATGGTCTCGAGTGACCCAGAGACGAATCCAGGCCTGCATAA
TTGGAACGTTGTTTTCGTCAAGGTGGAGGATGGTGCGCTGACAAGCATGA
GTGCTATGACCGTGCCAAAACTCACTTGGGCTCCAGTCACACTTACGAAG
ATACGATGGTATATTATCATCGACCAGGATGGGGAGACGGTGCTCGGAAA
TGGATTCTCTTTTACGAAGATGCTGCAAGGAAGATGGAAAGCGCCAAGAA
GAGGACCTCTCAATTTGTTGTTTGGGTGCCTTTTGCTTTGTATGGGAATA
AGACTGCAGCCTACGCACGCGGAAGGGCATGAAACTGTCTTTGTTCCAGG
AATTTGGTTGGATGACGAGAGGGCTAAGTGCCTGGATGGCTCCAAACCAG
GGGTCTCGACAAGGGAGAAGAGCTTGTCTTCGCCGGCTGCTCAGCAGGAG
CCATGATAGCCTACCTCCAGGTTGATTATTGGGCCGCATCGGGGCTTATC
CCTCCATCTATTCGCAAGGTAAGGGTCATGGCTAGTGCCGTCGGACGAAG
AAGCGGCGGCGGAACTTGTCGTGGGAGGCTTGTCTTTCCAACGCTCTGGA
GGAAGAAATCGCTGCTTCGTTGAATGCACGACCTCAGGTTGCATTTTCGA
GGAAAATTCATCCAAGAGGCCATCATGAGAGACTTGACAGACTTCATTAC
TGCGATGGAAACTTCTGGTCGGGTGCTACGATGGATACCGAAGAGCCTTG
GAATGGGATATGGTCTCGAGTGACCCAGAGACGAATCCAGGCCTGCATAA
TTGGAACGTTGTTTTCGTCAAGGTGGAGGATGGTGCGCTGACAAGCATGA
GTGCTATGACCGTGCCAAAACTCACTTGGGCTCCAGTCACACTTACGAAG
ATACGATGGTATATTATCATCGACCAGGATGGGGAGACGGTGCTCGGAAA
TGGATTCTCTTTTACGAAGATGCTGCAAGGAAGATGGAAAGCGCCAAGAA
GAGGACCTCTCAATTTGTTGTTTGGGTGCCTTTTGCTTTGTATGGGAATA
AGACTGCAGCCTACGCACGCGGAAGGGCATGAAACTGTCTTTGTTCCAGG
AATTTGGTTGGATGACGAGAGGGCTAAGTGCCTGGATGGCTCCAAACCAG
GGGTCTCGACAAGGGAGAAGAGCTTGTCTTCGCCGGCTGCTCAGCAGGAG
CCATGATAGCCTACCTCCAGGTTGATTATTGGGCCGCATCGGGGCTTATC
CCTCCATCTATTCGCAAGGTAAGGGTCATGGCTAGTGCCGTCGGACGAAG
AAGCGGCGGCGGAACTTGTCGTGGGAGGCTTGTCTTTCCAACGCTCTGGA
GGAAGAAATCGCTGCTTCGTTGAATGCACGACCTCAGGTTGCATTTTCGA
GGAAAATTCATCCAAGAGGCCATCATGAGAGACTTGACAGACTTCATTAC
TGCGATGGAAACTTCTGGTCGGGTGCTACGATGGATACCGAAGAGCCTTG
GAATGGGATATGGTCTCGAGTGACCCAGAGACGAATCCAGGCCTGCATAA
TTGGAACGTTGTTTTCGTCAAGGTGGAGGATGGTGCGCTGACAAGCATGA
GTGCTATGACCGTGCCAAAACTCACTTGGGCTCCAGTCACACTTACGAAG
ATACGATGGTATATTATCATCGACCAGGATGGGGAGACGGTGCTCGGAAA
TGGATTCTCTTTTACGAAGATGCTGCAAGGAAGATGGAAAGCGCCAAGAA
GAGGACCTCTCAATTTGTTGTTTGGGTGCCTTTTGCTTTGTATGGGAATA
AGACTGCAGCCTACGCACGCGGAAGGGCATGAAACTGTCTTTGTTCCAGG
AATTTGGTTGGATGACGAGAGGGCTAAGTGCCTGGATGGCTCCAAACCAG
GGGTCTCGACAAGGGAGAAGAGCTTGTCTTCGCCGGCTGCTCAGCAGGAG
CCATGATAGCCTACCTCCAGGTTGATTATTGGGCCGCATCGGGGCTTATC
CCTCCATCTATTCGCAAGGTAAGGGTCATGGCTAGTGCCGTCGGACGAAG
AAGCGGCGGCGGAACTTGTCGTGGGAGGCTTGTCTTTCCAACGCTCTGGA
GGAAGAAATCGCTGCTTCGTTGAATGCACGACCTCAGGTTGCATTTTCGA
GGAAAATTCATCCAAGAGGCCATCATGAGAGACTTGACAGACTTCATTAC
TGCGATGGAAACTTCTGGTCGGGTGCTACGATGGATACCGAAGAGCCTTG
GAATGGGATATGGTCTCGAGTGACCCAGAGACGAATCCAGGCCTGCATAA
TTGGAACGTTGTTTTCGTCAAGGTGGAGGATGGTGCGCTGACAAGCATGA
GTGCTATGACCGTGCCAAAACTCACTTGGGCTCCAGTCACACTTACGAAG
ATACGATGGTATATTATCATCGACCAGGATGGGGAGACGGTGCTCGGAAA
TGGATTCTCTTTTACGAAGATGCTGCAAGGAAGATGGAAAGCGCCAAGAA
GAGGACCTCTCAATTTGTTGTTTGGGTGCCTTTTGCTTTGTATGGGAATA
AGACTGCAGCCTACGCACGCGGAAGGGCATGAAACTGTCTTTGTTCCAGG
AATTTGGTTGGATGACGAGAGGGCTAAGTGCCTGGATGGCTCCAAACCAG

Synonyms

Publications