rna8478, rna8478 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8478
Unique Name	rna8478
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1247
Alignment location	KK037249.1:59399..60643 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100312g10.9861.mrna
Orig protein id	gnl\|cribi\|Naga_100312g10.9861
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:59399..60643 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100312g10	gene8219	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8478	rna8478-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22225.1	cds8451	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:59399..60643+
coding sequence from alignment at KK037249.1:59399..60643+

mRNA sequence

>rna8478 ID=rna8478|Name=rna8478|organism=Nannochloropsis gaditana|type=mRNA|length=1247bp
CGAGATAGGCGGCGTCAGATGTGCCTTTGTGAGCATAGATAAGGCATAAT
TCCGTGCGTATTCATTTCGTACGTCCCCCCAATATGTGCAACGTGCTCGT
TCATCTTCAAAACGAAATTCTCGGGGCGTATATATCGTGGCTTTTTCCCG
CGTGGAATGGAAAAAAGCTCGGATCTGATGCATGGCGTCGACAAATGACT
ACTTCATTCCCCTGACAAAGCATGTCGCACGCTCTGTTTCAAGGTCCTGT
CTTATGCATACAACATACTGACTGTGCGACTGGTTGAATGAATAATATAT
TTTTTGCCTGTCAAAATACTTTACGACCTCCTACAATCCGGCTTCGGGTT
GAGATTCTAAACGTGTAATCAGCAGCCTTGCATCTGACTGCGTGAGTTTT
ATGAGTAGCGCGTCACAAAGTACGTAACTACCACCTCCTGCCCCCCTTAA
AAAACTTCCAACATTGCAACACCAACCCTGGGTATTCACGCAGGCGATTG
AGTCAGTGTGCTGTGGTTTATTAGTCTTTGATACCGAACTGCTTCAACTA
TTACTGCCAAAAACCGAGAGAGCAGGATGGCGGGTAACCAGCCTCCTCCC
TTCAAGCTCCTCTTCGTCTGCGTGGAAAACTCCAATCGTAGTCAAATGAG
CCAGGCGTTCGCCACCATCCTAGGTGGGAATAAAGTGGAGGCTTACAGCG
CGGGAAGCAAGCCCAGTGGTGTCGTCAATCCGAAGGCCATCCTTTCCATG
AAAGAAATCGGCTATGATTTGTCCCTGCACGACTCCAAGAGTCTGGAAGA
GGTCGAAAGATTCGCTCCCTTCGATGCGGTGGTCACTATGGGTTGCGGAG
ACGCGTGCCCATGGATGCCGGCCAAGCGGACAGTCAATTGGACAATCCCT
GATCCCAAGCATATGGAGCCCGAAGAATTCAATAAAATACGGGACTATAT
CAGAAGTCTGGTCAAGGAGCTGCTGGATGAGCTTGAGACAGGGAATGACG
GGAAATGAATATGACAAAAAGGGTCAAAGCATGGGGGAAACCCAAGGAAG
GAGGAGATTCGTTCAAAAAATGGGAGATTCTTGCAAGCTGCGAGGAGTGC
AAGAAAAGCTCTCCGCAAGACTCAATTGAAACATGAATCTTTAAGGCAAT
ACTGACAAGGAAAAAAATTACTGAAGTAAGCCGGGATAAAAACCAACGAG
GAACTAAAAAAAGAAGAAAAAGTCATGCGCAAAATCTCTGCATTCAA

protein sequence of rna8478

>rna8478-protein ID=rna8478-protein|Name=rna8478|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MQGEGVGGEDGLRAGRDNDDGSEIGLGASGRRLMSKNEYYEQVAALDLNF
ALDNPLYADKEIHIVHAEDHWHWLKLARREETEEEEEEDEKQADEEEEEN
KEEKASNGEREREGGRKRWGRDDGFGRDQGETHSRRYKRRRLGLPHRGDL
RPPLRKVKVVSATLASRSRFFKSLFEQPFSENGGQVIYLTAHDEEGGSRR
A

mRNA from alignment at KK037249.1:59399..60643+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8478 ID=rna8478|Name=rna8478|organism=Nannochloropsis gaditana|type=mRNA|length=1245bp|location=Sequence derived from alignment at KK037249.1:59399..60643+ (Nannochloropsis gaditana)
AGCGGCGTTCGTTGCGAACCGACAGACTACCTACAAGTACCTTGATTCAC
GTCTCTATTGGCAATTTTCCTGTAACAGTCAACGGTTGAGAAAAAGAGCA
AATCAGGTACGCAATAATACGGAGTGACACAAAtgcaaggggaaggcgtt
GGCGGTGAAGATGGTCTCCGTGCCGGGCGTGACAACGACGATGGTTCGGA
AATCGGCCTTGGTGCCAGGtacgttccttctccttcctcctttcgaaCCC
ATCACCGCTTCTCCACTCTTTTTTCCTGACCTCGACTATGTCTCTGGCAA
ACGAAGTGGCAGGCGCTTAATGAGCAAGAACGAGTACTACGAGCAAGTCG
CTGCACTCGACCTAAATTTCGCCTTGGATAACCCTCTCTACGCAGACAAG
GAGATCCATGTAGGTTACGCATGCTGTTGTTGTTTGGGTTTTCACCGTAT
GAATGCACACTGACATAaaccctttttcttttttattGTGTCGCGCCGTC
GGCCGCCGTAAAGATTGTGCACGCTGAAGACCATTGGCATTGGCTCAAAT
TGGcacggagggaagaaaccgaggaggaagaggaggaggatgaaaagcag
gcggatgaggaggaggaggaaaacaaagaggaaaaagcaagcAATGGAGA
gcgtgaaagggaaggggggaggaaaaggtggggCCGGGACGATGGGTTTG
GAAGAGATCAGGGCGAGACTCACAGTAGGAGATACAAAAGGCGTCGACTG
GGACTCCCACACCGCGGAgacctccgcccccccctccggaaGGTCAAGGT
AAGGAGGAAGTCTTCCACCCTTAGGTGAAGGAAGGACCGCGGACCCTGGG
GAGTCGGGAGATGTGTGTccgcaagggggggggcatggtctgagaggaac
ggagggaggattgcGCCTGTGTCAGCTTTTGAGACGGGCTTGAAGCCGCT
CGCTGCCCCTTTTGCTCTGTGTTCTCagccttttttccccatgAGTTTCG
CGTCCGAATTGTTTTTTGCGCTCCCTTGCgttccccctgtcccttgaCCC
CTCCGGATCTGCTTGGACCTTgattgccctccccctctttccttctcggG
CGGCGCGCTTCGCAGGTGGTCTCTGCCACGTTGGCCAGCCGCTCCCGCTT
TTTCAAATCCCTCTTTGAGCAACCTTTCAGTGAGAATGGAGGTCAAGTGA
TCTACCTGACAGCGCACGATGAGGAAGGCGGGTCCCGGAGGGCGG

Coding sequence (CDS) from alignment at KK037249.1:59399..60643+

>rna8478 ID=rna8478|Name=rna8478|organism=Nannochloropsis gaditana|type=CDS|length=2416bp|location=Sequence derived from alignment at KK037249.1:59399..60643+ (Nannochloropsis gaditana)
AtgcaaggggaaggcgttGGCGGTGAAGATGGTCTCCGTGCCGGGCGTGA
CAACGACGATGGTTCGGAAATCGGCCTTGGTGCCAGTGGCAGGCGCTTAA
TGAGCAAGAACGAGTACTACGAGCAAGTCGCTGCACTCGACCTAAATTTC
GCCTTGGATAACCCTCTCTACGCAGACAAGGAGATCCATATTGTGCACGC
TGAAGACCATTGGCATTGGCTCAAATTGGcacggagggaagaaaccgagg
aggaagaggaggaggatgaaaagcaggcggatgaggaggaggaggaaaac
aaagaggaaaaagcaagcAATGGAGAgcgtgaaagggaaggggggaggaa
aaggtggggCCGGGACGATGGGTTTGGAAGAGATCAGGGCGAGACTCACA
GTAGGAGATACAAAAGGCGTCGACTGGGACTCCCACACCGCGGAgacctc
cgcccccccctccggaaGGTCAAGGTGGTCTCTGCCACGTTGGCCAGCCG
CTCCCGCTTTTTCAAATCCCTCTTTGAGCAACCTTTCAGTGAGAATGGAG
GTCAAGTGATCTACCTGACAGCGCACGATGAGGAAGGCGGGTCCCGGAGG
GCGGAtgcaaggggaaggcgttGGCGGTGAAGATGGTCTCCGTGCCGGGC
GTGACAACGACGATGGTTCGGAAATCGGCCTTGGTGCCAGTGGCAGGCGC
TTAATGAGCAAGAACGAGTACTACGAGCAAGTCGCTGCACTCGACCTAAA
TTTCGCCTTGGATAACCCTCTCTACGCAGACAAGGAGATCCATATTGTGC
ACGCTGAAGACCATTGGCATTGGCTCAAATTGGcacggagggaagaaacc
gaggaggaagaggaggaggatgaaaagcaggcggatgaggaggaggagga
aaacaaagaggaaaaagcaagcAATGGAGAgcgtgaaagggaagggggga
ggaaaaggtggggCCGGGACGATGGGTTTGGAAGAGATCAGGGCGAGACT
CACAGTAGGAGATACAAAAGGCGTCGACTGGGACTCCCACACCGCGGAga
cctccgcccccccctccggaaGGTCAAGGTGGTCTCTGCCACGTTGGCCA
GCCGCTCCCGCTTTTTCAAATCCCTCTTTGAGCAACCTTTCAGTGAGAAT
GGAGGTCAAGTGATCTACCTGACAGCGCACGATGAGGAAGGCGGGTCCCG
GAGGGCGGAtgcaaggggaaggcgttGGCGGTGAAGATGGTCTCCGTGCC
GGGCGTGACAACGACGATGGTTCGGAAATCGGCCTTGGTGCCAGTGGCAG
GCGCTTAATGAGCAAGAACGAGTACTACGAGCAAGTCGCTGCACTCGACC
TAAATTTCGCCTTGGATAACCCTCTCTACGCAGACAAGGAGATCCATATT
GTGCACGCTGAAGACCATTGGCATTGGCTCAAATTGGcacggagggaaga
aaccgaggaggaagaggaggaggatgaaaagcaggcggatgaggaggagg
aggaaaacaaagaggaaaaagcaagcAATGGAGAgcgtgaaagggaaggg
gggaggaaaaggtggggCCGGGACGATGGGTTTGGAAGAGATCAGGGCGA
GACTCACAGTAGGAGATACAAAAGGCGTCGACTGGGACTCCCACACCGCG
GAgacctccgcccccccctccggaaGGTCAAGGTGGTCTCTGCCACGTTG
GCCAGCCGCTCCCGCTTTTTCAAATCCCTCTTTGAGCAACCTTTCAGTGA
GAATGGAGGTCAAGTGATCTACCTGACAGCGCACGATGAGGAAGGCGGGT
CCCGGAGGGCGGAtgcaaggggaaggcgttGGCGGTGAAGATGGTCTCCG
TGCCGGGCGTGACAACGACGATGGTTCGGAAATCGGCCTTGGTGCCAGTG
GCAGGCGCTTAATGAGCAAGAACGAGTACTACGAGCAAGTCGCTGCACTC
GACCTAAATTTCGCCTTGGATAACCCTCTCTACGCAGACAAGGAGATCCA
TATTGTGCACGCTGAAGACCATTGGCATTGGCTCAAATTGGcacggaggg
aagaaaccgaggaggaagaggaggaggatgaaaagcaggcggatgaggag
gaggaggaaaacaaagaggaaaaagcaagcAATGGAGAgcgtgaaaggga
aggggggaggaaaaggtggggCCGGGACGATGGGTTTGGAAGAGATCAGG
GCGAGACTCACAGTAGGAGATACAAAAGGCGTCGACTGGGACTCCCACAC
CGCGGAgacctccgcccccccctccggaaGGTCAAGGTGGTCTCTGCCAC
GTTGGCCAGCCGCTCCCGCTTTTTCAAATCCCTCTTTGAGCAACCTTTCA
GTGAGAATGGAGGTCAAGTGATCTACCTGACAGCGCACGATGAGGAAGGC
GGGTCCCGGAGGGCGG

Synonyms

Publications