rna847, rna847 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna847
Unique Name	rna847
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1323
Alignment location	CM002456.1:559213..562464 -

Link to JBrowse

Properties


Property Name	Value
Product	alpha-glucosidase ii
Orig transcript id	gnl\|cribi\|Naga_100017g38.291.mrna
Orig protein id	gnl\|cribi\|Naga_100017g38.291
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:559213..562464 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g38	gene811	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29793.1	cds847	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna847	rna847-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:559213..562464-
coding sequence from alignment at CM002456.1:559213..562464-

mRNA sequence

>rna847 ID=rna847|Name=rna847|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp
ATGAACGCAAATAATATGACCATGCCCACCCGTTGGGCGGCTGTGACCGC
CGCGGCGCTCTTCTCTTCCTCGACTACGTGCTGGAGTTCGCGACCATCTT
CCCAGCCAGTACGTGCCAAGCCAACAGCATCCAGTGCAAACAGCAGTGAC
CATCGTATGTCGCATACTGAAAAAGGCGCTTTAATTTTCCTTCATGGTAG
CGGAGATGATGGCGGCAACATGGCGTATGCCTTGCGTGCGACGGGTTTCA
CTCAGCGAATGAACGCTCTCGGCATATCAGTGCACTGCCCTACAGCCAAA
CCTCGAAGATACACCTACGCAAGCGGTGCGCTGAGCAATGTATGGTTTGA
TCGTGTAGATTTGGACATTTCAGCACCGGAAGACAAGGCCGGTATGGACG
ACTCCTTCGCAGAGCTCATGAGTCTGATCGAGAAGCTTGAAAACGAGCAA
GGTATCTCGTCTTCTCGCATATATTTGGGCGGCTTCAGCATGGGTGGAGG
GATGGCGCTTGCCACATTGGCGAGAGAAACTAAAGTGCTAGCAGGGATTT
TTGCCATTGGCAGCTTCCTGGCCTCAGACTCTGCTGTCTACCAGTCGCCA
CAGCAAAGGACCATGCCACGCATCCTGCTGGCTCACGGACAATCGGACGC
TGTTGTACCCTATGCGTGGGGCGAGGCCACCGCCAGAAGATTGTATGCCT
GCAGTCAAGAGAACTTCGGTGGTGATAAAGAAAAGGGTCATGGTGAGGAA
GACAGGGTAGCTTTTTACGGCTTTCCCCGCCTGCAGCACACGTTTGACGA
GCGCGTCCTGTCCGTCCTGGCCAGATGGATCGAGACCGGCGCCCAAAAAT
TCCCTGACGTAGCAGAAGGCTGCATGCAAGAAGAGATGACGCGGACCTCT
CTCTCTTCACTGCCCGGAGCTCCCTCGCCATCGTCCGCGGATTTACCTTC
CATAGCCACCGCGGCCGCGCAGAGTGCGTCAGCTACCTTCCCATCGGACG
AGGTGCACATGACGCTGGAAAAAGCAGACGCACGGCAGACCCAAACACAG
GAGCAGACGGAAGAAAAAGGCAAAGTCGCTCCATGTAAGTACCGAGCCGT
CTTCCGCGTTCCACAAGACCGAGTCCAATCCTTCTTGGACCGCCCTGTGT
CTGCGCGCGGGGCGCACTTCTCTTTCGCCCACGGGCCGACGCCTGGCACC
GTTTGTACTTCGTTCGAAAGTACGCGGCCGGAGGAGACAGCCAAAGCGCT
TCTTGAGCGAGTTAAAAGCCGAGTCAGGGACCCGGATGCGCCAGGAGGCA
TTGACACCTGCCATCCCTCGTGA

protein sequence of rna847

>rna847-protein ID=rna847-protein|Name=rna847|organism=Nannochloropsis gaditana|type=polypeptide|length=1006bp
MASMGWFRAPFASRPSFPKSDASLLSSPVRKSTSRNVLALGRLTTAFVMI
SSVCQRTTTVAVDRSKFRKCADTGFCKEFRDVVPGALPRFRVDAASLKHD
EHAGFLGGQLLSSDANAKALNFSLQFYNDGTSRLKIKECDPLRERWEPPD
VVIEESLDPTAIRVDTSKSDGSLHVEFANDKLLRVQLDPFQVDLLVGGVP
ALTVNKGGLLHFQAYRAKKDKANAGSGGEESGQKIEEEVVDKHGGKKIVG
YWEDGLAIYEDGSREEKPSAEEEAAEARRLQEAAAADEDKWEEYFGGHTD
SRPHGPASVGIDVRFPGAEHLYGLPEHASSFRLKTTKGPNAQYAEPFRLY
NLDVFEYELDEPMALYGSIPFVASHTAALSAGVFLFNPSETFVDVEAGSG
HGDGYQTHWMSECGVLDLFLLPGPTPRAVAKQMTALTGTQALPPLFSLGY
HQCRWNYKDEKDVAQVHGKFEELDFPYDVLWLDIEHTDGKRYFTWDQGVF
PDPVSMQDSLAAQGRKMVTIIDPHIKRDDNFAIHSEATAKGLYVKDKFGA
DFDGFCWPGQSSYLDFTDAGVRRWWAERFALDKYTGSTSNLYTWNDMNEP
SVFNGPEVSMQKDCRNLAGVEHREWHNLYGMYMQRATAEGLTLRDPKGLE
RPFVLSRAFYAGSQRFGAIWTGDNKAAWEHLQVAAPMLLSINLAGLSFSG
ADVGGFFQDTDAELMTRWMQAGAFQPFFRGHAHHDTKRKEPWVYGEPTTS
RIRAAVMARYTLLPYWYTTFYIAYAEGLPVMRPLWMEYPTEKATFDMDDQ
WLIGQDLLVKPVTTAGATSLSVYFPQGLWYDIETLSSISGPATRTVPAPL
EKIPVYQRGGSIIPRKMRLRRSSSLMTHDPFTLVVAMNAKGLAEGLVYMD
DEHTLKHEKAGEFVLRKVTLADGMLRNVRQGGAEDRPFRNQVERIVVLGW
KAKPKAVTLSVSEQGGAEKQATTQRSLEFMYDAKKRVLTIRKPEVMLDED
WTIGLR

mRNA from alignment at CM002456.1:559213..562464-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna847 ID=rna847|Name=rna847|organism=Nannochloropsis gaditana|type=mRNA|length=3252bp|location=Sequence derived from alignment at CM002456.1:559213..562464- (Nannochloropsis gaditana)
TACAGCATGGCGTCCATGGGCTGGTTCAGGGCTCCGTTTGCCTCGCGGCC
CAGCTTTCCAAAGAGCGATGCCTCGCTTCTCAGCTCCCCTGTGAGGAAGT
CGACGAGTCGGAACGTCTTGGCCTTGGGACGTCTCACGACCGCGTTCGTG
ATGATATCTTCCGTCTGTCAACGTACAACAACTGTGGCTGTAGACCGCTC
CAAATTTCGCAAATGTGCGGATACCGGGTTTTGTAAGGAGTTTCGAGACG
TTGTCCCTGGGGCGCTTCCTCGATTTCGAGTAGACGCTGCCTCGCTCAAA
CATGACGAGCACGCTGGATTCCTAGGCGGGCAGCTTTTAAGCAGCGACGC
CAATGCTAAAGCTTTGAATTTCTCTCTACAATTTTATAACGATGGAACGT
CGCGACTGAAAATCAAGGAATGTGATCCTCTGCGGGAGAGATGGGAGCCA
CCCGACGTTGTGATCGAGGAAAGCTTGGATCCAACGGCTATCCGAGTGGA
CACCTCCAAATCAGATGGATCTTTGCATGTGGAGTTTGCCAACGACAAAC
TGTTGCGCGTGCAATTGGACCCGTTCCAAGTCGATTTGCTGGTGGGAGGC
GTGCCCGCCCTGACGGTGAATAAAGGGGGCCTTCTGCATTTCCAAGCCTA
CCGCGCCAAGAAGGACAAAGCGAACGCGGGATCGGGTGGGGAGGAAAGCG
GACAGAAAATAGAGGAGGAAGTGGTGGACAAGCATGGAGGCAAAAAGATT
GTGGGGTACTGGGAAGACGGTCTGGCGATCTACGAGGATGGAAGCCGGGA
GGAAAAGCCTAGCGCGGAGGAGGAAGCGGCCGAGGCGCGCCGCCTCCAGG
AAGCTGCCGCAGCGGATGAGGACAAGTGGGAGGAGTATTTTGGGGGGCAC
ACCGACAGCCGTCCGCACGGGCCAGCGTCTGTGGGGATAGACGTGCGTTT
TCCCGGCGCCGAGCACCTGTACGGTCTCCCGGAACACGCCTCCAGCTTCC
GTCTCAAGACAACCAAGGGCCCCAATGCCCAATACGCGGAACCCTTCCGC
TTGTACAATTTGGACGTGTTCGAATACGAGCTGGACGAGCCCATGGCACT
GTACGGCTCCATCCCTTTCGTGGCGAGCCACACGGCTGCCTTATCCGCCG
GGGTCTTCCTCTTCAACCCCTCGGAGACCTTCGTGGACGTTGAGGCCGGT
TCGGGGCATGGGGACGGATATCAGACGCACTGGATGAGTGAGTGCGGGGT
GCTTGATTTGTTCCTGCTTCCAGGGCCCACTCCACGGGCGGTAGCCAAGC
AAATGACCGCGCTGACGGGCACGCAGGCGCTCCCCCCGCTCTTCTCTCTG
GGTTACCACCAGTGCCGATGGAATTACAAGGACGAGAAGGACGTCGCGCA
GGTGCACGGAAAGTTCGAAGAGCTCGACTTCCCCTACGATGTCCTCTGGC
TGGACATCGAGCACACGGACGGGAAGCGTTACTTCACCTGGGACCAGGGC
GTCTTCCCCGACCCGGTCTCCATGCAGGATTCCTTGGCGGCGCAAGGCCG
GAAAATGGTGACGATCATCGATCCACACATCAAGAGGGACGACAACTTCG
CCATCCATTCGGAGGCGACGGCCAAAGGTTTGTATGTGAAGGATAAATTT
GGGGCAGACTTTGACGGGTTTTGCTGGCCCGGTCAGTCGTCTTACTTGGA
CTTCACAGATGCGGGTGTGAGAAGGTGGTGGGCGGAAAGGTTCGCGTTGG
ATAAGTATACGGGAAGCACTTCGAATCTTTACACTTGGAATGACATGAAC
GAGCCCTCGGTTTTCAATGGGCCGGAGGTATCGATGCAGAAGGACTGCCG
GAACCTAGCGGGCGTAGAGCACCGCGAGTGGCACAACTTGTACGGCATGT
ACATGCAGCGGGCAACCGCCGAGGGGCTGACGTTGCGGGACCCCAAGGGC
CTGGAGCGTCCCTTCGTCCTGAGTCGGGCCTTCTACGCGGGGTCGCAGCG
CTTCGGGGCCATTTGGACAGGGGACAACAAGGCGGCGTGGGAGCACCTGC
AGGTGGCCGCGCCCATGCTTCTCTCCATCAACCTGGCGGGCTTGTCCTTC
TCCGGGGCGGACGTTGGCGGCTTCTTTCAGGATACTGACGCGGAACTGAT
GACACGGTGGATGCAGGCAGGGGCCTTTCAACCTTTCTTCCGGGGCCACG
CCCACCACGACACGAAACGGAAAGAGCCTTGGGTGTACGGAGAGCCGACG
ACGTCGAGGATTCGAGCCGCGGTCATGGCACGCTACACCTTGCTGCCCTA
CTGGTACACGACCTTTTACATCGCGTACGCCGAGGGGCTCCCGGTCATGC
GGCCCCTGTGGATGGAGTATCCGACGGAAAAGGCGACCTTCGACATGGAC
GATCAGTGGCTGATCGGGCAGGACCTGTTGGTCAAGCCCGTGACAACCGC
CGGGGCCACCAGTCTGAGCGTGTATTTCCCTCAGGGGCTCTGGTACGACA
TTGAGACTTTGTCGTCCATTTCAGGCCCTGCTACACGGACGGTACCCGCC
CCTCTGGAGAAAATCCCAGTATATCAGCGGGGGGGGTCCATAATTCCTCG
CAAGATGCGGCTGCGGCGTTCGTCCTCCCTTATGACGCATGACCCCTTCA
CGCTCGTGGTGGCGATGAACGCAAAGGGGTTGGCCGAGGGCCTTGTCTAC
ATGGACGACGAGCACACCCTGAAACACGAGAAGGCAGGAGAATTCGTGCT
CAGGAAGGTGACCCTCGCGGACGGAATGCTGCGTAATGTGCGCCAGGGGG
GAGCGGAGGATAGGCCGTTCCGCAATCAAGTTGAGAGGATTGTTGTCCTG
GGTTGGAAGGCCAAACCTAAAGCCGTCACGCTCTCAGTTTCCGAGCAGGG
AGGGGCGGAGAAGCAAGCCACTACTCAGCGTAGCTTAGAATTTATGTACG
ACGCAAAGAAGCGCGTCCTTACGATTCGAAAGCCCGAGGTCATGCTTGAT
GAGGACTGGACGATTGGACTGCGGTAGGAAGTAGGAAGGGCTAGGGGAGG
AGGGAGGTGAATGTCTGAGATCCAGAGATGTGGAACGGGCCAAGATAGAG
TCGAATGAGGCGGTGAGAATAGACTGGAGGTGGTAAGCCGGAAGAGAAGG
TCAAAAGAGAGGGGGAGTGTGATCTCGGGTCGTCCTGAGCGGGCCGAAAA
AGTTCAAATAAAGGAAAGGAAGACGAGGGTAGAGCCCATCCGAGACACAA
TA

Coding sequence (CDS) from alignment at CM002456.1:559213..562464-

>rna847 ID=rna847|Name=rna847|organism=Nannochloropsis gaditana|type=CDS|length=3021bp|location=Sequence derived from alignment at CM002456.1:559213..562464- (Nannochloropsis gaditana)
ATGGCGTCCATGGGCTGGTTCAGGGCTCCGTTTGCCTCGCGGCCCAGCTT
TCCAAAGAGCGATGCCTCGCTTCTCAGCTCCCCTGTGAGGAAGTCGACGA
GTCGGAACGTCTTGGCCTTGGGACGTCTCACGACCGCGTTCGTGATGATA
TCTTCCGTCTGTCAACGTACAACAACTGTGGCTGTAGACCGCTCCAAATT
TCGCAAATGTGCGGATACCGGGTTTTGTAAGGAGTTTCGAGACGTTGTCC
CTGGGGCGCTTCCTCGATTTCGAGTAGACGCTGCCTCGCTCAAACATGAC
GAGCACGCTGGATTCCTAGGCGGGCAGCTTTTAAGCAGCGACGCCAATGC
TAAAGCTTTGAATTTCTCTCTACAATTTTATAACGATGGAACGTCGCGAC
TGAAAATCAAGGAATGTGATCCTCTGCGGGAGAGATGGGAGCCACCCGAC
GTTGTGATCGAGGAAAGCTTGGATCCAACGGCTATCCGAGTGGACACCTC
CAAATCAGATGGATCTTTGCATGTGGAGTTTGCCAACGACAAACTGTTGC
GCGTGCAATTGGACCCGTTCCAAGTCGATTTGCTGGTGGGAGGCGTGCCC
GCCCTGACGGTGAATAAAGGGGGCCTTCTGCATTTCCAAGCCTACCGCGC
CAAGAAGGACAAAGCGAACGCGGGATCGGGTGGGGAGGAAAGCGGACAGA
AAATAGAGGAGGAAGTGGTGGACAAGCATGGAGGCAAAAAGATTGTGGGG
TACTGGGAAGACGGTCTGGCGATCTACGAGGATGGAAGCCGGGAGGAAAA
GCCTAGCGCGGAGGAGGAAGCGGCCGAGGCGCGCCGCCTCCAGGAAGCTG
CCGCAGCGGATGAGGACAAGTGGGAGGAGTATTTTGGGGGGCACACCGAC
AGCCGTCCGCACGGGCCAGCGTCTGTGGGGATAGACGTGCGTTTTCCCGG
CGCCGAGCACCTGTACGGTCTCCCGGAACACGCCTCCAGCTTCCGTCTCA
AGACAACCAAGGGCCCCAATGCCCAATACGCGGAACCCTTCCGCTTGTAC
AATTTGGACGTGTTCGAATACGAGCTGGACGAGCCCATGGCACTGTACGG
CTCCATCCCTTTCGTGGCGAGCCACACGGCTGCCTTATCCGCCGGGGTCT
TCCTCTTCAACCCCTCGGAGACCTTCGTGGACGTTGAGGCCGGTTCGGGG
CATGGGGACGGATATCAGACGCACTGGATGAGTGAGTGCGGGGTGCTTGA
TTTGTTCCTGCTTCCAGGGCCCACTCCACGGGCGGTAGCCAAGCAAATGA
CCGCGCTGACGGGCACGCAGGCGCTCCCCCCGCTCTTCTCTCTGGGTTAC
CACCAGTGCCGATGGAATTACAAGGACGAGAAGGACGTCGCGCAGGTGCA
CGGAAAGTTCGAAGAGCTCGACTTCCCCTACGATGTCCTCTGGCTGGACA
TCGAGCACACGGACGGGAAGCGTTACTTCACCTGGGACCAGGGCGTCTTC
CCCGACCCGGTCTCCATGCAGGATTCCTTGGCGGCGCAAGGCCGGAAAAT
GGTGACGATCATCGATCCACACATCAAGAGGGACGACAACTTCGCCATCC
ATTCGGAGGCGACGGCCAAAGGTTTGTATGTGAAGGATAAATTTGGGGCA
GACTTTGACGGGTTTTGCTGGCCCGGTCAGTCGTCTTACTTGGACTTCAC
AGATGCGGGTGTGAGAAGGTGGTGGGCGGAAAGGTTCGCGTTGGATAAGT
ATACGGGAAGCACTTCGAATCTTTACACTTGGAATGACATGAACGAGCCC
TCGGTTTTCAATGGGCCGGAGGTATCGATGCAGAAGGACTGCCGGAACCT
AGCGGGCGTAGAGCACCGCGAGTGGCACAACTTGTACGGCATGTACATGC
AGCGGGCAACCGCCGAGGGGCTGACGTTGCGGGACCCCAAGGGCCTGGAG
CGTCCCTTCGTCCTGAGTCGGGCCTTCTACGCGGGGTCGCAGCGCTTCGG
GGCCATTTGGACAGGGGACAACAAGGCGGCGTGGGAGCACCTGCAGGTGG
CCGCGCCCATGCTTCTCTCCATCAACCTGGCGGGCTTGTCCTTCTCCGGG
GCGGACGTTGGCGGCTTCTTTCAGGATACTGACGCGGAACTGATGACACG
GTGGATGCAGGCAGGGGCCTTTCAACCTTTCTTCCGGGGCCACGCCCACC
ACGACACGAAACGGAAAGAGCCTTGGGTGTACGGAGAGCCGACGACGTCG
AGGATTCGAGCCGCGGTCATGGCACGCTACACCTTGCTGCCCTACTGGTA
CACGACCTTTTACATCGCGTACGCCGAGGGGCTCCCGGTCATGCGGCCCC
TGTGGATGGAGTATCCGACGGAAAAGGCGACCTTCGACATGGACGATCAG
TGGCTGATCGGGCAGGACCTGTTGGTCAAGCCCGTGACAACCGCCGGGGC
CACCAGTCTGAGCGTGTATTTCCCTCAGGGGCTCTGGTACGACATTGAGA
CTTTGTCGTCCATTTCAGGCCCTGCTACACGGACGGTACCCGCCCCTCTG
GAGAAAATCCCAGTATATCAGCGGGGGGGGTCCATAATTCCTCGCAAGAT
GCGGCTGCGGCGTTCGTCCTCCCTTATGACGCATGACCCCTTCACGCTCG
TGGTGGCGATGAACGCAAAGGGGTTGGCCGAGGGCCTTGTCTACATGGAC
GACGAGCACACCCTGAAACACGAGAAGGCAGGAGAATTCGTGCTCAGGAA
GGTGACCCTCGCGGACGGAATGCTGCGTAATGTGCGCCAGGGGGGAGCGG
AGGATAGGCCGTTCCGCAATCAAGTTGAGAGGATTGTTGTCCTGGGTTGG
AAGGCCAAACCTAAAGCCGTCACGCTCTCAGTTTCCGAGCAGGGAGGGGC
GGAGAAGCAAGCCACTACTCAGCGTAGCTTAGAATTTATGTACGACGCAA
AGAAGCGCGTCCTTACGATTCGAAAGCCCGAGGTCATGCTTGATGAGGAC
TGGACGATTGGACTGCGGTAG

Synonyms

Publications