rna8469, rna8469 (mRNA) Nannochloropsis gaditana

Overview
Namerna8469
Unique Namerna8469
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1200
Alignment locationKK037249.1:38477..39011 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100724g4.3076.mrna
Orig protein idgnl|cribi|Naga_100724g4.3076
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:38477..39011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100724g4gene8210Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8469rna8469-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22231.1cds8442Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8469 ID=rna8469|Name=rna8469|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp
GGCGTTCCTGTATCGCTCGAAACCACAAAAATGGGAGCTACAGAGCTGAC
GGAGGAGCGACCCGGGAAGGAGGCCGAGGGCCCGCCGGACGACTGCACTT
TTAAAGTCGATGAGGACGCCGCCGTCGCCGCAAAAGCCAGTAGAGTTTCC
GCTGCTTTTCATGAAGCCGCCAAGGCCGGCGACAATGCGGCCCTATCTAC
CCTCCTTCTCGCTTTCAATTCTTCCACCGATGCTCGTTCTTCCCTCTTGA
TCGACGCTCGCGATCCCAGGACAGGGCACACGGCCTTGCACGTGGCTTGC
AAGGCTGGCGCTCCTCTGACTGTCAAATGGTTGCTGGAAAAAGGCGCTTC
AATCCTCATCACAGACAAGGGAGGTTACACCCCCCTCGACTTGGCGCGGG
TCAAGCCATCGGACGAAAACATCCGAGATTGCGCCTGCCGCATACAGGAG
TACATTCAAGCGCACCCCCCACCCTACAAAAAGGTCGGGCCCCTCCTCGG
CTCCTTTTTTGAGCCCCCCCTGGAGAGAGCCTGGCTGGATTGGGCCTGCC
TGCACTATGGGCCCTCCCTCCTCGACCTGAAGGGCAGAGATCAGCGCTCT
CCCTTGCACTTGGCGGTATCGCACAAAGACGCCGCTTTCCTTGAGGAGCT
GCTGGAAATGGGCGCCGACCCGTTCGCCAAGGACACGGAGGGCCTCTCCC
CCTTAGACCTGGCCATGAGGAGCGGCCATCGCGAGAGCATCCGAGTCCTC
TCCCGCGCCATGCAGATGCAATTGGTGGCTTTCCTGGGCCTCACGCTCCT
CTTCCTCCTGTATCGCCATGGAGGGGATCCTCAGCAGGCCTGGACTGTCC
TGGCAACGCTCTGGCCGCTGGGCAAGACTTGGCAGCTATTGTGGACCGGG
AGCGGACTAAGCGCGGCCAGAAGGGGGGCGATGGGGGAGTGGCTCTCGTA
CTGGGCCCTCATCGTGCCCGTCTTCCTGCTCGAGGGGACCCTCCCTGCCG
GTTTGCTCGGCCGCAGGACCCCGCTCGAACGTGCCCTCAGGGACTTGTAC
ATGATCGTCAAGATAGTAGGCACGCTGTACTTGGTCTACCCGGGCTCGAG
GGGCGCGCGGAGGCTGTACGGATGGCTGGGGAGGCGGCAGAGAGGAAGCA
GGAGCCAGAGCGAGCGGGGGGGGGGGGCAATAAAGGCGAAGGGGGAATGA
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protein sequence of rna8469

>rna8469-protein ID=rna8469-protein|Name=rna8469|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MGFGLLLLTQKEDSSARGRELRGRRGVLIDVTQEALRSIECVLGAPMQPN
QGDGGDGILLQEGQDVRRTFDGGQNGSEATNLSGRDELMHKVWSVGRGSI
LFSNLQSPGTRAFMERWILNCGASWPVNNICKRNVLKIFLEVHWSKKNHW
KCFIRNFTRHI
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mRNA from alignment at KK037249.1:38477..39011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8469 ID=rna8469|Name=rna8469|organism=Nannochloropsis gaditana|type=mRNA|length=535bp|location=Sequence derived from alignment at KK037249.1:38477..39011+ (Nannochloropsis gaditana)
ATGGGCTTCGGACTCTTGCTCCTCACGCAAAAGGAGGACAGCAGCGCGCG
GGGGCGAGAATTgcgaggcaggagaggcgtGCTGATTGACGTCACTCAGG
AGGCACTGCGATCCATTGAGTGTGTGCTAGGGGCTCCAATGCAACCCAat
caaggagatggaggagacgggatCCTCTTgcaagaaggccaagacgTCCG
GCGCACCTTCGATGGAGGGCAGAATGGCAGTGAAGCAACGAATTTGAGCG
GGAGAGATGAGTTGATGCACAAGGTCTGGTCGGTGGGACGAGGATCCATT
CTATTTTCCAACCTGCAGTCACCTGGAACTCGGGCTTTCATGGAGAGGTG
GATATTAAATTGGTGCAACGAGTCACATTAATGGACGAACGGGGCATGTA
TCATAGGATAGCGGCGCATCTTGGCCGGTGAATAATATATGCAAGCGTAA
CGTGTTAAAAATCTTTCTTGAGGTTCACTGGAGTAAGAAAAATCACTGGA
AATGCTTCATCAGGAACTTTACAAGGCACATTTAA
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Coding sequence (CDS) from alignment at KK037249.1:38477..39011+

>rna8469 ID=rna8469|Name=rna8469|organism=Nannochloropsis gaditana|type=CDS|length=972bp|location=Sequence derived from alignment at KK037249.1:38477..39011+ (Nannochloropsis gaditana)
ATGGGCTTCGGACTCTTGCTCCTCACGCAAAAGGAGGACAGCAGCGCGCG
GGGGCGAGAATTgcgaggcaggagaggcgtGCTGATTGACGTCACTCAGG
AGGCACTGCGATCCATTGAGTGTGTGCTAGGGGCTCCAATGCAACCCAat
caaggagatggaggagacgggatCCTCTTgcaagaaggccaagacgTCCG
GCGCACCTTCGATGGAGGGCAGAATGGCAGTGAAGCAACGAATTTGAGCG
GGAGAGATGAGTTGATGCACAAGGTCTGGTCGGTGGGACGAGGATCCATT
CTATTTTCCAACCTGCAGTCACCTGGAACTCGGGCTTTCATGGAGAGGTG
GATATTAAATTGCGGCGCATCTTGGCCGGTGAATAATATATGCAAGCGTA
ACGTGTTAAAAATCTTTCTTGAGGTTCACTGGAGTAAGAAAAATCACTGG
AAATGCTTCATCAGGAACTTTACAAGGCACATTTAAATGGGCTTCGGACT
CTTGCTCCTCACGCAAAAGGAGGACAGCAGCGCGCGGGGGCGAGAATTgc
gaggcaggagaggcgtGCTGATTGACGTCACTCAGGAGGCACTGCGATCC
ATTGAGTGTGTGCTAGGGGCTCCAATGCAACCCAatcaaggagatggagg
agacgggatCCTCTTgcaagaaggccaagacgTCCGGCGCACCTTCGATG
GAGGGCAGAATGGCAGTGAAGCAACGAATTTGAGCGGGAGAGATGAGTTG
ATGCACAAGGTCTGGTCGGTGGGACGAGGATCCATTCTATTTTCCAACCT
GCAGTCACCTGGAACTCGGGCTTTCATGGAGAGGTGGATATTAAATTGCG
GCGCATCTTGGCCGGTGAATAATATATGCAAGCGTAACGTGTTAAAAATC
TTTCTTGAGGTTCACTGGAGTAAGAAAAATCACTGGAAATGCTTCATCAG
GAACTTTACAAGGCACATTTAA
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Synonyms
Publications