rna8464, rna8464 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8464
Unique Name	rna8464
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2448
Alignment location	KK037249.1:12873..14643 -

Link to JBrowse

Properties


Property Name	Value
Product	LrgB-like protein
Orig transcript id	gnl\|cribi\|Naga_100814g1.7367.mrna
Orig protein id	gnl\|cribi\|Naga_100814g1.7367
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:12873..14643 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100814g1	gene8205	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22236.1	cds8437	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8464	rna8464-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:12873..14643-
coding sequence from alignment at KK037249.1:12873..14643-

mRNA sequence

>rna8464 ID=rna8464|Name=rna8464|organism=Nannochloropsis gaditana|type=mRNA|length=2448bp
ATGGAGTTCCTCGACGCCCTCCCCGAGCCCCTCCTCGGCTGGCACCTCTA
CGACGCCGTCGTCCAGGCCGTCACACGCAGAGACCTGATCGAGGACCCCG
GCACGCGGCTCCGCAACCTCCGCCTCCTGCTAGGCGAGATCCCCCCCAGT
CACAAGCCCCTGCTCTGCAAGATCACCCGCATGGCCCAGCGCCTCCTCCA
AGAACCGAGCAACGGTCTGACATCGCAAGTCTTGGCCGAGGCCTTCGCCC
ATGGCGTTGTCCGCACGCCCTACCTGCCGCAGGCCCTCTCCAGTCGCCTC
GAGATCTCTCGTCTCCTGCAGAACAAGGAGGAGGTCATCGTCACGCAGAT
CCTCTTCGAGCACCGATCCGATCTTTTCGTGGACCTGGACGCCGAGCAAG
AGCGGCACTCACGCAAGCTGGAGCTGACCTGGGACAATCTGCTGTTGCTC
AGGCGGCAGCTAGAGACCGACCCCACGGCGGAGGAGCGGGGGGCGGAGGG
AGATGGAGAGGGCCCGGGGGAGGGAGGGCGGGAGAGTGTGAAGGAGGAGC
TGGCCCGCGCCGTCGCCTCTCGGCTTGCGGGCGTGGAAGCGGCCTTGAAC
CGGATCCGCTTCGTCTCCGCCTCCACCGACGACTGGCAGCAGGCCAGCGC
CTCGGACCTGCGTCGGCCCGCGCGCCCGGCCCCCGGCTCTCCTCCCTCGC
TCGCCGGCTCGGAGACCTCCAGCACCCTCTCCATGGCCGTGGGCGTGCGC
CAGGACATTTTGGACGTGCTCGAGGCCAAGACGGCGGAGAAAGTGGTGCG
GTCAGAGGCGGAGGGCCTTACCCCCGCCACCATCCACTCCCGGCTCCTTT
TCTGCGGTTTTCCGCGCGGGGACCTGAGCGATTTTCGCGCCTCGGGCGGC
GGCGTCCTGGGAGTCGCTTGCCTCATCTACTTCTTCCAGCACCACCCCAA
GGAGGCCGCTCTCCTCACCTTCAAGTACGCCCGGCGCTCGGGCTTTTGCT
TTCCCCGTGTCGTCTCCCGTGTCGTCCGCATGGTCATGGGTCCCCCCCCC
GTGCGGGACGAGCACTTGCTCCTTCACTTGTCCCAGGCCTCGTGGTGGCC
TCTGCTCTGCGAGCACGAGGCCGTCCCCTCCTTGGTCGCGCTCTCCCTCC
TCCTCCTCGACTACCTGGCCCGCCACGAGGCCCTCCGCCCCCACGAGGAG
GACATCTTCGTCCTGGAGGTCAAGCGCCAGCTCACCTGGGTCCTCAAGCA
AGGCCCTCCCTCCCTGGAGGCCGCCTGGCACCTCTGGCTCTCCGTCCGCC
TCGAGAAGCTCCGAGCCTTCGCCCGCGCCGAGAAGGCCCGGGTCTACCAC
AAGCAGTTCCCGCAGGAGCTCTCCGCCCTTCCCTCCTTCCCCAACTCCGC
GCCCGTCCCCCCCACCCCCCCTTCCGAGGCCGTGGCCCGTCTCACCTCCT
TCGCCGCCTCTCCTTCCTCCTCGCCCCCGGCATCCACGGACCACCCCGCG
CCCACCCCCCTGGCGCCCGCCCCCTCTCTCGCCCCCCCCCGGCTCCTGGG
CGTCCCCTCCGGCTCCTCCACCATCCTCTCCTCCCTTCCCGCCTCTCAGC
TTCTGGCCTTGGAGGGAGCGCTGCCCCCTCAGCACCAGGACTACGCCTGG
CGGCTCGTGTACTCGCTGGCTGGGAACGGGGCGAGTTTGACCACTTTCTT
CAAGAAGGCGAAGGACAAGGAGCCTACGCTTCTGGTACTCAAGGACATGC
AAGGCGGCGTCTTCGGGGGATTTGCCACGCGGGCTTGGAGCGCGAAAGGC
GAGAGCTACTACGGGGACGGCGAGTCCTTCGTCTGGAGCTTGGTCGGGGA
GCCTGGCCCCAAGGGCTTGGGCGAGGCGCCGCTCAGGAAGTACGGGTGGA
GCACAGAGAACTCCTACTTCCAGCTCTCTACGGCCAAGGACGGGCTGGCC
ATGGGCGGCGGGGGCTCTTTCGCCCTCTTTGTCGATCCTGAGCTTCTGAA
TGGCTCCTCGGGACCCAGCGAGACTTTCTTCTCCTCTGCGTTGCACCTCC
CTCCCTCCACAGCTCTGCCCACCCCCATACCCAACTTGCAGCCCACCCAG
TCCGTCCCATTCTCCCTACCTACGCATTCCAGACCAGCAGCAACGCCGGA
AGACGCCTGTTTCGAGGTTCTAGACCTGGAATTGTGGTCGCTGGAGGCGG
AGTACATGGCCTCCGTGACCAGTCTGACCAGAGCCGCGACAAGCATGCTG
GAGGGAACGGCGGGGAAAAAGGGAATGGCGGAGGAGATGGAGCAGGCCAT
TGAGAAGCATACGAGGGGAAGTTCAACGTTACATGAAAGATTTAGGATGG
CAGAAGTGCTGGCGCCATTGAATATGTATAGCAGTCTTTTTGTTGATCGT
ACAAGCTCGAAAGCGATGAGACGGAAACGTCTCCATCGAGAAAAATGA

protein sequence of rna8464

>rna8464-protein ID=rna8464-protein|Name=rna8464|organism=Nannochloropsis gaditana|type=polypeptide|length=472bp
GQEGGCLCGDCSRPGHGPGRQKGAGPQAGGKPPDRSLLSRLYRAGCRPAP
PLPGPGPRLPLPPRRHARSLRPPPRHGRRDDGGGAASLPRAQAGHGPSDP
LAGRFLRPYSRPPSALRRLPRPLPRPPPGRRPGPRFRSLAIDHGQARRPA
HVQKRRSRLLPPPTSLLTPPPFSTTKTPFSQSLHKALAIATAVSGAVSVL
LSARLAASGSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSC
AGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSI
LAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGLPPALG
KATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQ
VSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTI
PPVRAALLAILVKGAKTTASLP

mRNA from alignment at KK037249.1:12873..14643-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8464 ID=rna8464|Name=rna8464|organism=Nannochloropsis gaditana|type=mRNA|length=1771bp|location=Sequence derived from alignment at KK037249.1:12873..14643- (Nannochloropsis gaditana)
GGCCAAGAAGGAGGCTGTCTTTGCGGAGATTGCTCGCGGCCTGGACACGG
CCCTGGTCGGCAAAAAGGCGCAGGGCCCCAGGCCGGTGGAAAGCCTCCAG
ACCGGTCTCTCCTTAGCCGCCTTTATCGCGCTGGATGCCGCCCTGCGCCG
CCTCTTCCTGGCCCGGGGCCTCGCCTTCCCCTCCCCCCTCGCCGGCATGC
TCGGTCTCTTCGCCCTCCTCCTCGCCACGGGCGCCGGGACGACGGCGGCG
GGGCCGCTTCTCTACCGCGTGCTCAAGCCGGGCACGGACCTTCTGACCCG
CTGGCTGGCCGTTTTCTTCGTCCCTACTCTCGTCCTCCTTCCGCTCTCCG
CCGGCTCCCTCGCCCCCTCCCTCGCCCTCCGCCTGGGCGCCGTCCTGGTC
CTCGGTTTCGAAGCCTCGCTATTGACCACGGCCAAGCTCGCCGACCTGCT
CACGTCCAAAAACGACGTAGCCGTCTCCTCCCCCCCCCAACCTCGCTCCT
AACCCCCCCCCCCTTCTCCACCACCAAGACCCCCTTCAGCCAGTCGCTGC
ACAAGGCACTCGCCATCGCCACCGCTGTCTCAGGGGCCGTCTCCGTCCTC
CTCTCCGCCCGGCTTGCCGCTTCCGGCTCCCCTCTGCTCCCTTCCCTCGC
AAGGACCCTCTTCACATTCCTGGCCACCATCCTTTCCTACGTGACGGGGG
CTCGCCTCCCTCTCAAGCTCCGCAAGGCCGTCCACCCCCTCCTGTCCTGC
GCTGGGCTGACCCTCGCCCTCCTCTCCCTCCACGCTCGCCTCCTCGGCCA
GTCCCTCACCCACCAGCTCCACGCCTACGTTTCCCGTGCACCCTGCCCCC
TGCATCTTGGGGGGGGCGACCTCCTTCTCGGGCTTCTTGGACCCTCTATC
CTCGCCATGGCCGTCCAGATGTATGAGCGCCGCGCTCTCCTGAAGCAGAA
CCTCAGCAAGATTCTGGGGACCTGCTTGGGAGCCTCCGTTTTCGGCCTCT
TCTCTTCTGCCGCCCTCTCGCGAGCCTTGGGCCTCCCGCCCGCCCTTGGA
AAAGCCACCCTCTCTCGCTGCATCACCACCCCCTTGGCCATGGCCGTGGC
GGGGCTGGTGGGCGCCGAGACCAGCATCGCCGTCCCTGTCGTGGTCCTGA
CAGGGATCCTGGGCGCCAACGCAGGCGCCGCGCGGCTGGCCTCCTACCAA
GTCTCCGACTCCGTGAGCAAAGGGCTGGCCATGGGTGCCGCGGCGCACGG
GATCGGGACGGCCAGCCTGACGGAAGAGCCGGAGCCACTGGCATTTGCAG
CCATGGGGATGGCTCTGACGGGTGTGATGACCACGGTGCTCGTCACCATT
CCCCCCGTGCGAGCGGCTCTGCTTGCAATCTTGGTGAAGGGCGCGAAGAC
GACTGCTTCGTTGCCATAGAGTAAGAAGACGTCGGAAATGACGTGTGGAG
AATGAGTGAAATGTCTGGAATCGACATAATGTTGGGGAGCATAACTCACC
AGGTCAGAGATTTATTCGGCAGAGGCAATAAAACAAATGGATAGATCGCG
ATCTGAAATTCCTACAGAAAAGCTTCAGGCTTTTTTGTCGAGGTGTGAGC
AAGTAAGATGTATGCTAAAATATAATGCTGACAGACAGCATGCATTGGAT
CAAATCGCGCGCACGGAAGTTTAATCCCGCCTTGCTGTGAGGATGGTTTA
AGCTGTCTGATTCCTTGCTGGTAGTATTTTTTCTTCAAATATGTACCATA
TCGAATTTTCTGAAATTCATT

Coding sequence (CDS) from alignment at KK037249.1:12873..14643-

>rna8464 ID=rna8464|Name=rna8464|organism=Nannochloropsis gaditana|type=CDS|length=1419bp|location=Sequence derived from alignment at KK037249.1:12873..14643- (Nannochloropsis gaditana)
GGCCAAGAAGGAGGCTGTCTTTGCGGAGATTGCTCGCGGCCTGGACACGG
CCCTGGTCGGCAAAAAGGCGCAGGGCCCCAGGCCGGTGGAAAGCCTCCAG
ACCGGTCTCTCCTTAGCCGCCTTTATCGCGCTGGATGCCGCCCTGCGCCG
CCTCTTCCTGGCCCGGGGCCTCGCCTTCCCCTCCCCCCTCGCCGGCATGC
TCGGTCTCTTCGCCCTCCTCCTCGCCACGGGCGCCGGGACGACGGCGGCG
GGGCCGCTTCTCTACCGCGTGCTCAAGCCGGGCACGGACCTTCTGACCCG
CTGGCTGGCCGTTTTCTTCGTCCCTACTCTCGTCCTCCTTCCGCTCTCCG
CCGGCTCCCTCGCCCCCTCCCTCGCCCTCCGCCTGGGCGCCGTCCTGGTC
CTCGGTTTCGAAGCCTCGCTATTGACCACGGCCAAGCTCGCCGACCTGCT
CACGTCCAAAAACGACGTAGCCGTCTCCTCCCCCCCCCAACCTCGCTCCT
AACCCCCCCCCCCTTCTCCACCACCAAGACCCCCTTCAGCCAGTCGCTGC
ACAAGGCACTCGCCATCGCCACCGCTGTCTCAGGGGCCGTCTCCGTCCTC
CTCTCCGCCCGGCTTGCCGCTTCCGGCTCCCCTCTGCTCCCTTCCCTCGC
AAGGACCCTCTTCACATTCCTGGCCACCATCCTTTCCTACGTGACGGGGG
CTCGCCTCCCTCTCAAGCTCCGCAAGGCCGTCCACCCCCTCCTGTCCTGC
GCTGGGCTGACCCTCGCCCTCCTCTCCCTCCACGCTCGCCTCCTCGGCCA
GTCCCTCACCCACCAGCTCCACGCCTACGTTTCCCGTGCACCCTGCCCCC
TGCATCTTGGGGGGGGCGACCTCCTTCTCGGGCTTCTTGGACCCTCTATC
CTCGCCATGGCCGTCCAGATGTATGAGCGCCGCGCTCTCCTGAAGCAGAA
CCTCAGCAAGATTCTGGGGACCTGCTTGGGAGCCTCCGTTTTCGGCCTCT
TCTCTTCTGCCGCCCTCTCGCGAGCCTTGGGCCTCCCGCCCGCCCTTGGA
AAAGCCACCCTCTCTCGCTGCATCACCACCCCCTTGGCCATGGCCGTGGC
GGGGCTGGTGGGCGCCGAGACCAGCATCGCCGTCCCTGTCGTGGTCCTGA
CAGGGATCCTGGGCGCCAACGCAGGCGCCGCGCGGCTGGCCTCCTACCAA
GTCTCCGACTCCGTGAGCAAAGGGCTGGCCATGGGTGCCGCGGCGCACGG
GATCGGGACGGCCAGCCTGACGGAAGAGCCGGAGCCACTGGCATTTGCAG
CCATGGGGATGGCTCTGACGGGTGTGATGACCACGGTGCTCGTCACCATT
CCCCCCGTGCGAGCGGCTCTGCTTGCAATCTTGGTGAAGGGCGCGAAGAC
GACTGCTTCGTTGCCATAG

Synonyms

Publications