EWM22236.1, cds8437 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|585102691|gb|EWM22236.1| (LrgB-like protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 892.108 bits (2304), Expect = 0.000e+0 Identity = 472/472 (100.00%), Postives = 472/472 (100.00%), Query Frame = 0
Query: 1 GQEGGCLCGDCSRPGHGPGRQKGAGPQAGGKPPDRSLLSRLYRAGCRPAPPLPGPGPRLPLPPRRHARSLRPPPRHGRRDDGGGAASLPRAQAGHGPSDPLAGRFLRPYSRPPSALRRLPRPLPRPPPGRRPGPRFRSLAIDHGQARRPAHVQKRRSRLLPPPTSLLTPPPFSTTKTPFSQSLHKALAIATAVSGAVSVLLSARLAASGSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGLPPALGKATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALLAILVKGAKTTASLP 472
GQEGGCLCGDCSRPGHGPGRQKGAGPQAGGKPPDRSLLSRLYRAGCRPAPPLPGPGPRLPLPPRRHARSLRPPPRHGRRDDGGGAASLPRAQAGHGPSDPLAGRFLRPYSRPPSALRRLPRPLPRPPPGRRPGPRFRSLAIDHGQARRPAHVQKRRSRLLPPPTSLLTPPPFSTTKTPFSQSLHKALAIATAVSGAVSVLLSARLAASGSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGLPPALGKATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALLAILVKGAKTTASLP
Sbjct: 1 GQEGGCLCGDCSRPGHGPGRQKGAGPQAGGKPPDRSLLSRLYRAGCRPAPPLPGPGPRLPLPPRRHARSLRPPPRHGRRDDGGGAASLPRAQAGHGPSDPLAGRFLRPYSRPPSALRRLPRPLPRPPPGRRPGPRFRSLAIDHGQARRPAHVQKRRSRLLPPPTSLLTPPPFSTTKTPFSQSLHKALAIATAVSGAVSVLLSARLAASGSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGLPPALGKATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALLAILVKGAKTTASLP 472
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|553188343|ref|XP_005854779.1| (hypothetical protein NGA_2069300, partial [Nannochloropsis gaditana CCMP526] >gi|422294281|gb|EKU21581.1| hypothetical protein NGA_2069300, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 304.679 bits (779), Expect = 1.401e-99 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
Query: 4 GGCLCGDCSRPGHGPGRQKGAGPQAGGKPPDRSLLSRLYRAGCRPAPPLPGPGPRLPLPPRRHARSLRPPPRHGRRDDGGGAASLPRAQAGHGPSDPLAGRFLRPYSRPPSALRRLPRPLPRPPPGRRPGPRFRSLAIDHGQARRPAHVQKRRSRLLPPPT 164
GGCLCGDCSRPGHGPGRQKGAGPQAGGKPPDRSLLSRLYRAGCRPAPPLPGPGPRLPLPPRRHARSLRPPPRHGRRDDGGGAASLPRAQAGHGPSDPLAGRFLRPYSRPPSALRRLPRPLPRPPPGRRPGPRFRSLAIDHGQARRPAHVQKRRSRLLPPP
Sbjct: 1 GGCLCGDCSRPGHGPGRQKGAGPQAGGKPPDRSLLSRLYRAGCRPAPPLPGPGPRLPLPPRRHARSLRPPPRHGRRDDGGGAASLPRAQAGHGPSDPLAGRFLRPYSRPPSALRRLPRPLPRPPPGRRPGPRFRSLAIDHGQARRPAHVQKRRSRLLPPPN 161
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|299473680|emb|CBN78073.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 211.075 bits (536), Expect = 1.219e-58 Identity = 109/236 (46.19%), Postives = 160/236 (67.80%), Query Frame = 0
Query: 223 FLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGLPPALGKATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALL 458
LAT+ + G R+P ++ KAVHP++ C+ + + + + +G L +Y++R+ CP+HLG GD+LLGLLGPS+L+ AVQMY RR L+ ++ ++ + + GLF +A +SR LGLP L A LSR IT+PLAMA+ L+GA+ S+A+ +VVLTG++GAN GA L + V D ++GLA G +AHG+GTA++ EP AF+A+ MALT +TVLV+IP VR AL+
Sbjct: 282 LLATLFGFSAGTRMPRRVSKAVHPVVMCSAVAMGTAAAIGKGVGLGFADMLRSYLTRSRCPVHLGAGDVLLGLLGPSVLSFAVQMYRRRNLIFEDAKQVAAGSVFCASSGLFGTALVSRLLGLPTTLRLAALSRNITSPLAMAICSLIGADPSLAIAIVVLTGVIGANFGATALDALGVKDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVSMALTATASTVLVSIPSVRTALV 517
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|224008725|ref|XP_002293321.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970721|gb|EED89057.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 193.741 bits (491), Expect = 3.780e-52 Identity = 122/292 (41.78%), Postives = 182/292 (62.33%), Query Frame = 0
Query: 174 TTKTP--FSQSLHKALAIATAVSGAVSVLLSARLAAS--GSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGL-PPALGKATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALLAI 460
T K P FS +L + L ++G SV L + AS PL ++ F T+ S+V GA LP + K VHPL++CAGLT A L G + L +Y + PL G GD+LL LLGP+++A++ QMY R+ L+++N+ ++ + L +S+ GL+ +AA R L + P + + LSR IT+PLAMA+A ++GA+ S+AV +VVLTG+ GAN GA+ L + + DSV++GL +GAAAHG+GTA+ +E + FAA+ MALT TVLV+IP V+ ++L +
Sbjct: 235 TNKQPQAFSLTLFRTLKAFAWLTGISSVTLINKSPASQWNKPL-----QSAFLLSITLSSFVFGANLPKRFTKTVHPLVTCAGLTWLASKTFAMLTGSTFLAILQSYKAGTLAPLSAGAGDVLLFLLGPAVVALSCQMYGRKKLMRENIPEVGISTLVSSLGGLYGTAAAVRLLNIVNPMIRLSLLSRNITSPLAMAIASILGADVSLAVTIVVLTGLFGANFGASILDAAGIKDSVARGLGIGAAAHGLGTAAFADEKDAFPFAAIAMALTASACTVLVSIPAVKNSVLKL 521
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|219118464|ref|XP_002180004.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408261|gb|EEC48195.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 187.578 bits (475), Expect = 5.108e-51 Identity = 114/287 (39.72%), Postives = 168/287 (58.54%), Query Frame = 0
Query: 176 KTPFSQSLHKALAIATAVSGAVSVLLSARLAASGSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGLPPALGK----ATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALL 458
K PFS + T ++ +S+L + SPL +T F T +YV GARLP K +HPL++ + L L L+ AR+ GQ + +Y + P+ G GD+LL LLGPS+++ A+ MY RR LLK NL +L +S GLF +AA R + L G+ + L+R ITT L+MA+ ++G + S+A VVVLTGI+GA G A LA +SD + +GLA+G+++ G+G A++++EP+ FAA+ M LT + T LV+IP VRAAL+
Sbjct: 121 KKPFSDATMGFFIKGTFITAVLSLLATKMNNDFSSPL-----QTAFLGFFTFAAYVWGARLPTGFVKVIHPLVTSSILVLGLMQALARINGQDFLDVVRSYKVGSLYPMKAGAGDILLYLLGPSVVSFAISMYSRRDLLKSNLLVVLTAMFVSSAGGLFGTAAFVRLINLGGRGGRMVRLSVLARNITTALSMALTAMLGGDISVAASVVVLTGIIGATYGKALLALLNISDPIVRGLAIGSSSQGLGVAAISDEPDAFPFAAISMVLTAISATTLVSIPAVRAALI 402
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|219118995|ref|XP_002180264.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408521|gb|EEC48455.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 190.274 bits (482), Expect = 6.490e-51 Identity = 124/292 (42.47%), Postives = 183/292 (62.67%), Query Frame = 0
Query: 171 PFSTTKTPFSQSLHKALAIATAVSGAVSVLLSARLAASGSPLLPSLART-LFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFG-LFSSAALSRALGL-PPALGKATLSRCITTPLAMAVAGLVG-AETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALL 458
PF T K PF S L T SG L +A+L G+ + T LF +T+ S+V GARLP L K +HPL++C LT A + AR+ G+S L +Y + + + G GD LL LLGP+++++AV MY+RR L+++N+ ++ GT +G S FG LF +A R L + PA+ + LSR IT+PLAM++A ++G A+ S+AV +VV+TG++GAN GA L + + D+V++GL MGAAAHG+GTA++ E + FAA+ MALT TV V++P +R L+
Sbjct: 233 PFPTIK-PFDDSTATMLYGLTVFSG----LAAAKLTLDGASYATTTPLTALFMLSSTLASFVWGARLPKALTKVLHPLVTCTSLTWAAAAAFARVTGRSFASMLQSYRTGSLGKMA-GAGDWLLFLLGPAVVSLAVSMYDRRKLMRENIPEV-GTSIGVSTFGGLFGTAWAVRFLSIGNPAVRLSLLSRNITSPLAMSIASILGGADVSLAVSMVVITGLIGANFGATLLDALGIRDAVARGLGMGAAAHGLGTAAIVNEKDAFPFAAISMALTASAATVAVSVPAIRRVLV 517
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|1210521861|dbj|GAX19296.1| (hypothetical protein FisN_4Lh128 [Fistulifera solaris]) HSP 1 Score: 188.734 bits (478), Expect = 1.365e-50 Identity = 118/283 (41.70%), Postives = 174/283 (61.48%), Query Frame = 0
Query: 178 PFSQSLHKALAIATAVSGAVSVLLSARLAASGSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFG-LFSSAALSRALGL-PPALGKATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALL 458
PFS AL + + G ++ L+++ A G +L + LF T+ ++V GARLP KL +HPLL C T + A GQS L +Y + + G GD+LL LLGP+++++A+ MYE+R L++ NL+++ GT +G S FG L+ +A L R L + P L + LSR IT+PLAMA+AG++GA+ S+AV VV+TG+ GAN GA L + + D V++GL++GA+AHG+GTA+ E + FAA+ MALT TV+V+IP R LL
Sbjct: 213 PFSDECFHALTLTSVGLGLLT--LASKFA--GITVLARQSSALFLLATTLSTFVYGARLPKKLTTIIHPLLVCTSFTWVVARALAAATGQSFRSILKSYRTGSLGLKTSGAGDILLFLLGPAVISLAISMYEKRKLMRDNLAEV-GTAVGVSTFGGLYGTALLVRLLDVGNPFLRLSLLSRNITSPLAMAIAGIIGADVSLAVTAVVITGVFGANFGATILTALGIKDPVARGLSIGASAHGLGTAAFANEKDAFPFAAIAMALTASAATVVVSIPFFRRILL 490
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|1072233055|gb|OEU17786.1| (hypothetical protein FRACYDRAFT_184681 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 179.874 bits (455), Expect = 1.111e-46 Identity = 115/300 (38.33%), Postives = 185/300 (61.67%), Query Frame = 0
Query: 178 PFSQSLHKALAIATAVSGAVSVLLSARLAASG-SPLLPSLAR---TLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLH----LGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGLP-PALGKATLSRCITTPLAMAVAGLVGAE---TSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALLAILVKGA 465
PFS L K L I +SG ++ ++ + ASG + LL L +L T+ +V G+RL +++K +HPL++C+ LT A++ + A+ G++ L Y + H G GD+LL LGP+++++++ MY++R L++ N +I+ +S+ GLF +A + R +GL P+ A LSR IT+PLAMA+AGL+GA SIAV +VV+TG+ GAN GAA L + + + V++G+++GAAAHG+GTA+ +E + FAA+ MALT T LV++P ++ +L I + GA
Sbjct: 270 PFSDELMKKLRIVAILSGLAALEGASPVFASGPAKLLIKLKTPILSLLLGSTTLSGFVYGSRLSKQIKKIIHPLITCSALTWAVMVVFAKCTGRTFFSLLSTY--KMGKGFHGLSGTGAGDILLFALGPAVMSLSISMYDKRDLIRDNFLQIISAVSVSSIGGLFGTAWMVRLMGLTMPSFRVALLSRNITSPLAMAIAGLLGASASTVSIAVSLVVVTGLFGANFGAAILTAAGIQNPVARGMSIGAAAHGLGTAAFVDEKDAFPFAAISMALTATACTCLVSVPVIKKLVLQIALNGA 567
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|224005114|ref|XP_002296208.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|209586240|gb|ACI64925.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 175.637 bits (444), Expect = 2.267e-46 Identity = 111/286 (38.81%), Postives = 166/286 (58.04%), Query Frame = 0
Query: 178 PFSQSLHKALAIATAVSGAVSVLLSARLAASGSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSRALGL--PPALGKATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALLAIL 461
PF++ + L T ++GA+S+ + + +PL RTLF FL T+ +YV GARLP K VHPL++ TL L L + + G S L Y + + P+ G GDLLL LLGP++ ++V MY R+ ++ +NL+ ++ L ++ GLF +A R L + + + LSR +TT LA+ + L+G + +IA VVVLTGI GA G L S+++ D VS+GL MGAA G+G A++ E E FAA+ M LT V T LV++P V+ L+ I+
Sbjct: 133 PFTEETYNFLLQGTVLTGAISMAATRQNYVYATPL-----RTLFMFLGTVFTYVFGARLPSSFTKVVHPLVTSTTGTLLLTRLDSLITGSSFEDVLKTYRTGSLSPMKSGAGDLLLFLLGPAVGCLSVAMYSRKKIMAENLAVVVVAMLCSAFGGLFGTAWYVRLLNIGSSKMVRLSLLSRNVTTALAIVITQLLGGDMAIAASVVVLTGIFGATVGRGLLDSFKIDDPVSRGLGMGAAGQGLGVAAMMPEKEAFPFAAINMVLTAVCATALVSVPSVKEMLINIV 413
BLAST of EWM22236.1 vs. NCBI_GenBank
Match: gi|1210516560|dbj|GAX24610.1| (hypothetical protein FisN_4Hh128 [Fistulifera solaris]) HSP 1 Score: 175.637 bits (444), Expect = 9.503e-46 Identity = 121/283 (42.76%), Postives = 175/283 (61.84%), Query Frame = 0
Query: 178 PFSQSLHKALAIATAVSGAVSVLLSARLAASGSPLLPSLARTLFTFLATILSYVTGARLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFG-LFSSAALSRALGL-PPALGKATLSRCITTPLAMAVAGLVGAETSIAVPVVVLTGILGANAGAARLASYQVSDSVSKGLAMGAAAHGIGTASLTEEPEPLAFAAMGMALTGVMTTVLVTIPPVRAALL 458
PFS AL + + G ++ L++R A G+ +L + LF T+ ++V GARLP KL K +HPLL C T A+ A GQS L +Y + + G GD+LL LLGP+++++A+ MYE+R L++ NL+++ GT +G S FG L+ +A L R L + P L + LSR IT+PLAMA+A ++GA+ S+AV VVLTG+ GAN GA L + + D V++GL +GA+AHG+GTA+ E + FAA+ MALT TV+V+IP R LL
Sbjct: 213 PFSDECFHALTLTSVGLGLLT--LASRFA--GTTVLARQSSALFLLATTLSTFVYGARLPKKLTKIIHPLLICTSFTWAVARALAAATGQSFRSILKSYRTGSLGWKTSGAGDILLFLLGPAVISLAISMYEKRKLMRDNLAEV-GTAVGVSTFGGLYGTALLVRLLDIGNPFLRLSLLSRNITSPLAMAIAAIIGADVSLAVSAVVLTGVFGANFGATILTALGIKDPVARGLGIGASAHGLGTAAFANEKDAFPFAAIAMALTASAATVVVSIPFFRRILL 490 The following BLAST results are available for this feature:
BLAST of EWM22236.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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