|
|
Properties
| Property Name | Value |
|---|
| Product | rap2 interacting protein x isoform 3 |
| Orig transcript id | gnl|cribi|Naga_102102g1.10741.mrna |
| Orig protein id | gnl|cribi|Naga_102102g1.10741 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:7919..8916 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8462 ID=rna8462|Name=rna8462|organism=Nannochloropsis gaditana|type=mRNA|length=680bp
TATGCGCCACTGACACGACTGATGTCGTTTCCTACAGACACAATCTCCCT
AGATTCAGATCCTTGCTGCGAGCTATGTCGTGGTTTTTCAGTCACTGGCT
CGGCGGCGGAGGAGACGGGGGAGGAGGTGGAGCTGGCAGTCGACGGGGAG
AGATGCGAGGTGCAGGGGAAGCACTTTCCTCATCCTCCCCGCCAAGCAGC
ACGTCTCAAATCAAAATGGGCGACTACGACCTCCGCACCTGCGTCTCCTC
GTCGGGGGGCCTCCTCTCGGGAGGCACGCCGCAGCAGCACGCCCTCGTCC
AGCTCAAGTGCGCCATTCAGGCCCTCCTGAAGGAAAGGTGCCACCCTCCC
TTCCAACCGGGGGGCACGCTGTCCTCCTGCATCTCAGCAACCCCTCGAGC
ACCCAATCCGGGCGAGGGCGGGTCTCAAGGGAGCAGAGAGCCCACGCCCG
GCCTGGAAGCCGCTGTCGGTGCTCCCCGCACTGTAGGTGAAGGGCCTGCA
CGAGGCGGTCCACCTGAGTCTGGACTAAGGCATCAGTGCGTGGTCGAGGC
ACCTCGCTCGGGAGTCGCCGGAGGAGTGGGAACGGAGACCGCTCCTCACG
AAGGTGTCAGCTCTGTGAGGACGGAGGAGGAGGACCCGACTTTATGTAAG
CATGCCTTCTTCCCCTATCTTGAGCTCTGA back to topprotein sequence of rna8462 >rna8462-protein ID=rna8462-protein|Name=rna8462|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
ERSPQPQPCPPLPLSRCPPSWSASTASTRPCSPPPPSTTSWVGPPLAPAD
PPPASPPFSSCPIGRARAWLRLSLNAQCLETSLRALMTQHKHLLQVFYDP
SLSLLLCPEGSLILLALVSTLETFSFSLHLKPGLDREVAYPFIDWAGGGQ
GGRGAGTGGSLKRGKDKKAALALREKEQDGREGGREGGGPAVSLSHACLP
ADYDPVAGWNQAGGRGGDEADATSPSTQPDAVLQRA back to topmRNA from alignment at KK037249.1:7919..8916+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8462 ID=rna8462|Name=rna8462|organism=Nannochloropsis gaditana|type=mRNA|length=998bp|location=Sequence derived from alignment at KK037249.1:7919..8916+ (Nannochloropsis gaditana)
GAGCGCTCGCCTCAACCGcagccttgccctcccctgcccctttccaGGTG
TCCCCCGAGCTGGTCGGCTTCCACCGCGTCTACGAGGCCGTGctcgcctc
caccgccgtcaACAACGTCGTGGGTAGGgcctcctctcgcccccgccgac
cccccccccgcctcaccgcccttctcttcctgtccAATAGGTCGCGCGCG
GGCGTGGCTGCGGCTCTCCTTGAACGCCCAATGCCTGGAAACGAGCCTGC
GGGCCCTCATGACCCAGCACAAGCACCTGCTGCAGGTGGGCcgggggaca
agggaggcggggagggaagggcggaggcggaagctgGGGAGACGCgagcc
tccttcccctgcgcTCAACGCGCCGCGCCATTTCCCCCACAGGTCTTCTA
CgacccgtccctctcccttctcctctgcccgGAGGGgtccctcatcctcc
tcgccctcgtctccaCCCTGGAGACCTTcagcttctccctccacctcaaG
CCGGGCCTGGACCGGGAGGTGGCCTACCCGTTCATCGActgggcgggcgg
ggggcagggaggtaggggcgCCGGCACCGGGGGCTCActgaagaggggga
aggacaagaaggccGCGCTGGCcctgagggagaaggagcaggatgggagg
gagggcgggagggagggaggggggccggcggtctccctttcccatgcctg
cctccccgcAGACTATGATCCAGTCGCTGGATGGAACCAagctggaggac
gaggaggagatgaagcgGATGCGACAAGCCCTTCAACTCAACCCGATgtg
agcagggagggaaagaggatgagactgatggagggagaggggaagggctc
gagggcgggaaagagggggggaccgaggaagggagggaggaacacaGATG
GctcacgccctctccccgcaCCAGGCTGTCCTTCAACGAGCATGACCGGT
CGGGGGACGGCGCGGAGGGCCTGGAGAGGCTCTTGGAccaggtggggg back to topCoding sequence (CDS) from alignment at KK037249.1:7919..8916+ >rna8462 ID=rna8462|Name=rna8462|organism=Nannochloropsis gaditana|type=CDS|length=2133bp|location=Sequence derived from alignment at KK037249.1:7919..8916+ (Nannochloropsis gaditana)
GAGCGCTCGCCTCAACCGcagccttgccctcccctgcccctttccaGGTG
TCCCCCGAGCTGGTCGGCTTCCACCGCGTCTACGAGGCCGTGctcgcctc
caccgccgtcaACAACGTCGTGGGTAGGgcctcctctcgcccccgccgac
cccccccccgcctcaccgcccttctcttcctgtccAATAGGTCGCGCGCG
GGCGTGGCTGCGGCTCTCCTTGAACGCCCAATGCCTGGAAACGAGCCTGC
GGGCCCTCATGACCCAGCACAAGCACCTGCTGCAGGTCTTCTACgacccg
tccctctcccttctcctctgcccgGAGGGgtccctcatcctcctcgccct
cgtctccaCCCTGGAGACCTTcagcttctccctccacctcaaGCCGGGCC
TGGACCGGGAGGTGGCCTACCCGTTCATCGActgggcgggcggggggcag
ggaggtaggggcgCCGGCACCGGGGGCTCActgaagagggggaaggacaa
gaaggccGCGCTGGCcctgagggagaaggagcaggatgggagggagggcg
ggagggagggaggggggccggcggtctccctttcccatgcctgcctcccc
gcAGACTATGATCCAGTCGCTGGATGGAACCAagctggaggacgaggagg
agatgaagcgGATGCGACAAGCCCTTCAACTCAACCCGATGCTGTCCTTC
AACGAGCATGAGAGCGCTCGCCTCAACCGcagccttgccctcccctgccc
ctttccaGGTGTCCCCCGAGCTGGTCGGCTTCCACCGCGTCTACGAGGCC
GTGctcgcctccaccgccgtcaACAACGTCGTGGGTAGGgcctcctctcg
cccccgccgaccccccccccgcctcaccgcccttctcttcctgtccAATA
GGTCGCGCGCGGGCGTGGCTGCGGCTCTCCTTGAACGCCCAATGCCTGGA
AACGAGCCTGCGGGCCCTCATGACCCAGCACAAGCACCTGCTGCAGGTCT
TCTACgacccgtccctctcccttctcctctgcccgGAGGGgtccctcatc
ctcctcgccctcgtctccaCCCTGGAGACCTTcagcttctccctccacct
caaGCCGGGCCTGGACCGGGAGGTGGCCTACCCGTTCATCGActgggcgg
gcggggggcagggaggtaggggcgCCGGCACCGGGGGCTCActgaagagg
gggaaggacaagaaggccGCGCTGGCcctgagggagaaggagcaggatgg
gagggagggcgggagggagggaggggggccggcggtctccctttcccatg
cctgcctccccgcAGACTATGATCCAGTCGCTGGATGGAACCAagctgga
ggacgaggaggagatgaagcgGATGCGACAAGCCCTTCAACTCAACCCGA
TGCTGTCCTTCAACGAGCATGAGAGCGCTCGCCTCAACCGcagccttgcc
ctcccctgcccctttccaGGTGTCCCCCGAGCTGGTCGGCTTCCACCGCG
TCTACGAGGCCGTGctcgcctccaccgccgtcaACAACGTCGTGGGTAGG
gcctcctctcgcccccgccgaccccccccccgcctcaccgcccttctctt
cctgtccAATAGGTCGCGCGCGGGCGTGGCTGCGGCTCTCCTTGAACGCC
CAATGCCTGGAAACGAGCCTGCGGGCCCTCATGACCCAGCACAAGCACCT
GCTGCAGGTCTTCTACgacccgtccctctcccttctcctctgcccgGAGG
GgtccctcatcctcctcgccctcgtctccaCCCTGGAGACCTTcagcttc
tccctccacctcaaGCCGGGCCTGGACCGGGAGGTGGCCTACCCGTTCAT
CGActgggcgggcggggggcagggaggtaggggcgCCGGCACCGGGGGCT
CActgaagagggggaaggacaagaaggccGCGCTGGCcctgagggagaag
gagcaggatgggagggagggcgggagggagggaggggggccggcggtctc
cctttcccatgcctgcctccccgcAGACTATGATCCAGTCGCTGGATGGA
ACCAagctggaggacgaggaggagatgaagcgGATGCGACAAGCCCTTCA
ACTCAACCCGATGCTGTCCTTCAACGAGCATGA back to top
|