EWM22238.1, cds8435 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22238.1
Unique Name	cds8435
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037249.1:7919..8203 +
Alignment location	KK037249.1:8311..8715 +
Alignment location	KK037249.1:8843..8863 +

Link to JBrowse

Properties


Property Name	Value
Start range	7919
Start range	.
Protein id	EWM22238.1
Product	rap2 interacting protein x isoform 3
Partial	true
Orig transcript id	gnl\|cribi\|Naga_102102g1.10741.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:7919..8203 +
KK037249.1	supercontig	KK037249.1:8311..8715 +
KK037249.1	supercontig	KK037249.1:8843..8863 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR004012	Run

Homology

[Close]

BLAST of EWM22238.1 vs. NCBI_GenBank
Match: gi|585102694|gb|EWM22238.1| (rap2 interacting protein x isoform 3, partial [Nannochloropsis gaditana])

HSP 1 Score: 465.692 bits (1197), Expect = 9.983e-166
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0

Query:    1 ERSPQPQPCPPLPLSRCPPSWSASTASTRPCSPPPPSTTSWVGPPLAPADPPPASPPFSSCPIGRARAWLRLSLNAQCLETSLRALMTQHKHLLQVFYDPSLSLLLCPEGSLILLALVSTLETFSFSLHLKPGLDREVAYPFIDWAGGGQGGRGAGTGGSLKRGKDKKAALALREKEQDGREGGREGGGPAVSLSHACLPADYDPVAGWNQAGGRGGDEADATSPSTQPDAVLQRA 236
            ERSPQPQPCPPLPLSRCPPSWSASTASTRPCSPPPPSTTSWVGPPLAPADPPPASPPFSSCPIGRARAWLRLSLNAQCLETSLRALMTQHKHLLQVFYDPSLSLLLCPEGSLILLALVSTLETFSFSLHLKPGLDREVAYPFIDWAGGGQGGRGAGTGGSLKRGKDKKAALALREKEQDGREGGREGGGPAVSLSHACLPADYDPVAGWNQAGGRGGDEADATSPSTQPDAVLQRA
Sbjct:    1 ERSPQPQPCPPLPLSRCPPSWSASTASTRPCSPPPPSTTSWVGPPLAPADPPPASPPFSSCPIGRARAWLRLSLNAQCLETSLRALMTQHKHLLQVFYDPSLSLLLCPEGSLILLALVSTLETFSFSLHLKPGLDREVAYPFIDWAGGGQGGRGAGTGGSLKRGKDKKAALALREKEQDGREGGREGGGPAVSLSHACLPADYDPVAGWNQAGGRGGDEADATSPSTQPDAVLQRA 236

[Close]

BLAST of EWM22238.1 vs. NCBI_GenBank
Match: gi|299115812|emb|CBN74375.1| (rap2 interacting protein x isoform 3 [Ectocarpus siliculosus])

HSP 1 Score: 66.6254 bits (161), Expect = 5.544e-9
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 0

Query:   54 ASPPFSSCPIGRARAWLRLSLNAQCLETSLRALMTQHKHLLQVFYDPSLSLLLCPEGSLILLALVSTLETFSFSL 128
            AS    S P+GRARAW+R  L  +CLE+ + AL+ + + L++VFY+P+ +L  C EGS+ILL L + LE F  ++
Sbjct:  156 ASLSHVSTPLGRARAWIRQCLVCKCLESCVAALLEEDR-LVKVFYEPT-ALARCREGSIILLRLCAALEAFDVAI 228

The following BLAST results are available for this feature:

BLAST of EWM22238.1 vs. NCBI_GenBank

BLAST of EWM22238.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585102694\|gb\|EWM22238.1\|	9.983e-166	100.00	rap2 interacting protein x isoform 3, partial [Nan...	[more]
gi\|299115812\|emb\|CBN74375.1\|	5.544e-9	45.33	rap2 interacting protein x isoform 3 [Ectocarpus s...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8462	rna8462	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications