rna846, rna846 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna846
Unique Name	rna846
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2794
Alignment location	CM002456.1:557544..559138 +

Link to JBrowse

Properties


Property Name	Value
Product	lysophospholipase-like 1
Orig transcript id	gnl\|cribi\|Naga_100017g37.310.mrna
Orig protein id	gnl\|cribi\|Naga_100017g37.310
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:557544..559138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g37	gene810	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna846	rna846-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29812.1	cds846	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:557544..559138+
coding sequence from alignment at CM002456.1:557544..559138+

mRNA sequence

>rna846 ID=rna846|Name=rna846|organism=Nannochloropsis gaditana|type=mRNA|length=2794bp
TCATAGACAGGGATCTTTTCGGGATTCACAGGTCGAATTTTAGCACCAGA
GCATGCGCGGTCATCAGCTTATAACAGGGCTGGGGCTCCTTCTAGCTTCC
ACTACGACCGCCTTTGTTGGGCCAGTCCATCGAGTGCAACATTCCATCAC
CAAACAGAGCTTTGGCACACAGACATGTGAGAGCAGCTCGTGCCTTGGAG
TCTCCCGGCGGGAGCGTACGCGCATGATGGCCGCCACATTAGATGCGCCC
CCTAAGGTACGTTCGTGCGACCTGCACGGACATGCCCGTAGAGCATGGCG
CATTCGATAAGGTGGTCCGTGCGATTCCCCTTCGCGTCATAAGAATTCAA
GAACGTTTGTAGCTTTATTTTTTTCCACCACCGGTCCCGAGGTATTGTTC
ACTCCTCAGTGCGATCCAGCATCCATGCATTGATGAACATTCAATGATGC
ATGTTTTCCATGTTCAAACCTACGCCTTGTTTGATTGCTTCAGATTCCGA
CATTTTGAGCGTTTTCATGGTTTACATATACGTTGACAACACATGGCATT
TGACCACAGTCCTCGGCCGTGGAGGGGATGGTGGCGCGGCCCGATATCCG
CAACATCGCCATCATCGCCCACGTCGACCACGGCAAGACCACGCTGGTCG
ACGCCATGCTCAAGCAGGCCCAGGTCTTTCGCGAGAACGAGAAGGTGCAA
GAGCGCATCATGGACTCCAATGACCAGGAGCGGGAGCGAGGCATCACCAT
CCTGGCGAAGAACGCGGCCATCAACTACAACGGAGTGAAGATCAACATCG
TGGATACTCCGGGCCACGCCGATTTTGGAGGAGAGGTGGAGCGTGTGTTG
GGCATGGTCGACGGGGTCTTGCTCGTGGTGGACTCCGTGGAGGGCCCCAA
GCCCCAGACCCGCTTCGTTCTCAAGAAGGCCCTGGAGATGGGCCACCGCG
TCGTCGTCGTGGTGAACAAGATCGACCGGCCCTCGGCGCGGCCCGACTAC
GTCGTGGACAAGACCTTCGACCTTTTCTGTGACCTCAATTCAAGCGACGA
GCAGCTGGACTTCCAGATCGTGTACGCCTCCGCCTTGCAGGGGATCTCGG
GCCACGAGCCGGACGAGATGGCCAGCGACATGGTGCCGCTCTTTGACACC
ATCATGAAGCTGCCCTGTCCCCAGGTGCGTGCAGAGGGGGAGGACCTGAT
CCAGATGATGGTCGCAAACATCGACTACGACTCCTTCAAAGGGAAGATGG
GCATCGGCCGGATTCTGTCGGGGAAGATGAAGAAGGGTCAGACCGTTGGC
ATCGCCAAGCCCGACGAGCCGGTGCGTACGGGCAAATTGGCCGAGCTCTT
CTGCTTCGACAACTTGGGCCGCACCCCGGTGGAGGAGGCGTCTGCGGGGG
ATATTGTCATGTTCAGCGGCATCACCGACTTCACCATCGGCGACACCATC
GTTGACCCCCGAAACCCGCGCCCGCTCACGCCCATCACGGTGGAGGAGCC
AACTGTGAAGATGACCTTTGGCGTCAACAAATCGCCTTTGGCGGGCCAGG
AGGGCACCCTCTTGACCACGCGCGTGATCAAGGACAGGCTGGCCAAGGAG
TTGGAGAAGAACGTGGCCCTGCGCGTGGAAGACACGGACTCGGCCGACAC
CTACATGGTGGCGGGGCGCGGGCAGATGCACCTGACCGTTCTGATCGAGA
ATATGCGCCGGGAGGGCTTTGAGCTCTGGATCGGTCCCCCCCGGGTGATC
GAAAAAGTCATCGACGGTGTCAAATGCGAGCCGTACGAGTCGGTGGAGGT
GACGGTGCCGGACGAGTACATGGGCGGGGTGGTCGACCTCCTGGCCAAGC
GGAAGGGGGAGATGCTCTCGATGGGCACTGCGTTGGAGGAGGGGGCGGGC
TACGTGGAATATCTGGTGCCCACGCGCGGCATGATCGGACTGAGGAACGC
CATGCTCACCGCCACGCGCGGGATGGCGGTGATGGAGTCCTCCTTCCACA
GCTACCGGCCAAACTGCGGGGAAATCTCTTCTAGGGACAAGGGCTCTCTG
CTCGCCTTCGAGACGGGGGACTCGACGCCCTTTGGGATCATCGGGGCCCA
GGACCGAGGACAACTTTTCATCGAGCCCAAGATGAAGGTGTATGCAGACA
TGATCGTGGGGGTGCACCAGCGGCCCGGGGACCTGAAGGTGAACGTGTGC
AAAGTCAAGGCCCTGACCAATATGCGCTCGGCCACCAAGGAGAAGACAGA
CGGGATCCAGACGCCGCTGGAGCTCACCCTGGACGCGGCGGTCGAGTACA
TCGCGGACGATGAGCTGGTAGAGGTGACGCCGCAAAGCATCCGCATGACC
AAGCGCCCGGGCTGGGACAAGCGAAAGAGCAGCAAGTAAGCACAGGGGCC
TTGTCTGGGCGCCTCGGGCTCTGTTTCTGACAGAAGTGCCACGAACACGA
ACGACTGAGGGTCATAAATAAGTAGCACAGCCGAATCGGAGGAAGAGGAA
AGGGGACAAGGGAGGGCCGGTATGGGATGGATGTGGAAAGACTGAAAACG
CACTCCGTGAAGGGGTTGGGCGAATGGAATTAGTGGGAGCGGATAGGACG
TGTGCAGTACCTCACGACCGTTGTTGGCATGTCGCTGTCTCAACATGGTT
TGTACCGCAAGGTCGGCGACCATCGAAAAGAGTAGGGCAGGGAAAGACGG
TTGGTTACGAACTTGAGAGGAAAAGCCCTGTGTGGATATAGAACACCCTT
GGTAAGCGCAAAAAGAAACAAAATCGTATAGAGTCATCTCTTTG

protein sequence of rna846

>rna846-protein ID=rna846-protein|Name=rna846|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MNANNMTMPTRWAAVTAAALFSSSTTCWSSRPSSQPVRAKPTASSANSSD
HRMSHTEKGALIFLHGSGDDGGNMAYALRATGFTQRMNALGISVHCPTAK
PRRYTYASGALSNVWFDRVDLDISAPEDKAGMDDSFAELMSLIEKLENEQ
GISSSRIYLGGFSMGGGMALATLARETKVLAGIFAIGSFLASDSAVYQSP
QQRTMPRILLAHGQSDAVVPYAWGEATARRLYACSQENFGGDKEKGHGEE
DRVAFYGFPRLQHTFDERVLSVLARWIETGAQKFPDVAEGCMQEEMTRTS
LSSLPGAPSPSSADLPSIATAAAQSASATFPSDEVHMTLEKADARQTQTQ
EQTEEKGKVAPCKYRAVFRVPQDRVQSFLDRPVSARGAHFSFAHGPTPGT
VCTSFESTRPEETAKALLERVKSRVRDPDAPGGIDTCHPS

mRNA from alignment at CM002456.1:557544..559138+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna846 ID=rna846|Name=rna846|organism=Nannochloropsis gaditana|type=mRNA|length=1595bp|location=Sequence derived from alignment at CM002456.1:557544..559138+ (Nannochloropsis gaditana)
ATGAACGCAAATAATATGACCATGTGAGATGCTATAAGACCCAAAGATCG
GCTTGACAAGGACGAAAATCCAGCGCGGGAGGGTACAGGGGTCCTGGGGG
GGGTGCGtcaccctttccccaacCTGCTGGCCACGCGTTCGCCCCGACCA
GAAGATCGGATCGAAACCTTACTCCTTGTGTCTGTGTCGTCACGCCCGTC
GGATGAACGACTACTCACCATGGAGAGCTCGCCTTGTCTCAGGGAAAAAT
TGTGCCGCAGGTTTTGACGCCTACTCTGTTCCTACGTTGGCTCAGGCCCA
CCCGTTGGGCGGCTGTGACCGCCGCGGcgctcttctcttcctcgactACG
TGCTGGAGTTCGCGACCATCTTCCCAGCCAGTACGTGCCAAGCCAACAGC
ATCCAGTGCAAACAGCAGTGACCATCGTATGTCGCATACTGAAAAAGGCG
CTTTAATTTTCCTTCATGGTAGCGGAGATGATGGCGGCAACATGGCGTAT
GCCTTGCGTGCGACGGGTTTCACTCAGCGAATGAACGCTCTCGGCATATC
AGTGCACTGCCCTACAGCCAAACCTCGAAGATACACCTACGCAAGCGGTG
CGCTGAGCAATGTATGGTTTGATCGTGTAGATTTGGACATTTCAGCACCG
GAAGACAAGGCCGGTATGGACGACTCCTTCGCAGAGCTCATGAGTCTGAT
CGAGAAGCTTGAAAACGAGCAAGGTATCTCGTCTTCTCGCATATATTTGG
GCGGCTTCAGCATGGGTGGAGGGATGGCGCTTGCCACATTGGCGAGAGAA
ACTAAAGTGCTAGCAGGGATTTTTGCCATTGGCAGCTTCCTGGCCTCAGA
CTCTGCTGTCTACCAGTCGCCACAGCAAAGGACCATGCCACGCATCCTGC
TGGCTCACGGACAATCGGACGCTGTTGTACCCTATGCGTGGGGCGAGGCC
ACCGCCAGAAGATTGTATGCCTGCAGTCAAGAGAACTTCGGTGGTGATAA
AGAAAAGGGTCATGGTGAGGAAGACAGGGTAGCTTTTTACggctttcccc
gcctgcaGCACACGTTTGACGAGCGCGTCCTGTCCGTCCTGGCCAGATGG
ATCGAGACCGGCGCCCAAAAATTCCCTGACGTAGCAGAAGGCTGCATGCA
AGAAGAGATGACGCggacctctctctcttcacTGCCCGGAGCTCCCTCGC
CATCGTCCGCGGATTTACCTTCCATAGCCACCGCGGCCGCGCAGAGTGCG
TCAGCTACCTTCCCATCGGACGAGGTGCACATGACGCTGGAAAAAGCAGA
CGCACGGCAGACCCAAACACAGGAGCAgacggaagaaaaaggcaaagTCG
CTCCATGTAAGTACCGAGCCGTCTTCCGCGTTCCACAAGACCGAGTCCAA
TCCTTCTTGGACCGCCCTGTGTCTGCGCGCGGGGCGCACTTCTCTTTCGC
CCACGGGCCGACGCCTGGCACCGTTTGTACTTCGTTCGAAAGTACGCGGC
CGGAGGAGACAGCCAAAGCGCTTCTTGAGCGAGTTAAAAGCCGAGTCAGG
GACCCGGATGCGCCAGGAGGCATTGACACCTGCCATCCCTCGTGA

Coding sequence (CDS) from alignment at CM002456.1:557544..559138+

>rna846 ID=rna846|Name=rna846|organism=Nannochloropsis gaditana|type=CDS|length=2646bp|location=Sequence derived from alignment at CM002456.1:557544..559138+ (Nannochloropsis gaditana)
ATGAACGCAAATAATATGACCATGCCCACCCGTTGGGCGGCTGTGACCGC
CGCGGcgctcttctcttcctcgactACGTGCTGGAGTTCGCGACCATCTT
CCCAGCCAGTACGTGCCAAGCCAACAGCATCCAGTGCAAACAGCAGTGAC
CATCGTATGTCGCATACTGAAAAAGGCGCTTTAATTTTCCTTCATGGTAG
CGGAGATGATGGCGGCAACATGGCGTATGCCTTGCGTGCGACGGGTTTCA
CTCAGCGAATGAACGCTCTCGGCATATCAGTGCACTGCCCTACAGCCAAA
CCTCGAAGATACACCTACGCAAGCGGTGCGCTGAGCAATGTATGGTTTGA
TCGTGTAGATTTGGACATTTCAGCACCGGAAGACAAGGCCGGTATGGACG
ACTCCTTCGCAGAGCTCATGAGTCTGATCGAGAAGCTTGAAAACGAGCAA
GGTATCTCGTCTTCTCGCATATATTTGGGCGGCTTCAGCATGGGTGGAGG
GATGGCGCTTGCCACATTGGCGAGAGAAACTAAAGTGCTAGCAGGGATTT
TTGCCATTGGCAGCTTCCTGGCCTCAGACTCTGCTGTCTACCAGTCGCCA
CAGCAAAGGACCATGCCACGCATCCTGCTGGCTCACGGACAATCGGACGC
TGTTGTACCCTATGCGTGGGGCGAGGCCACCGCCAGAAGATTGTATGCCT
GCAGTCAAGAGAACTTCGGTGGTGATAAAGAAAAGGGTCATGGTGAGGAA
GACAGGGTAGCTTTTTACggctttccccgcctgcaGCACACGTTTGACGA
GCGCGTCCTGTCCGTCCTGGCCAGATGGATCGAGACCGGCGCCCAAAAAT
TCCCTGACGTAGCAGAAGGCTGCATGCAAGAAGAGATGACGCggacctct
ctctcttcacTGCCCGGAGCTCCCTCGCCATCGTCCGCGGATTTACCTTC
CATAGCCACCGCGGCCGCGCAGAGTGCGTCAGCTACCTTCCCATCGGACG
AGGTGCACATGACGCTGGAAAAAGCAGACGCACGGCAGACCCAAACACAG
GAGCAgacggaagaaaaaggcaaagTCGCTCCATGTAAGTACCGAGCCGT
CTTCCGCGTTCCACAAGACCGAGTCCAATCCTTCTTGGACCGCCCTGTGT
CTGCGCGCGGGGCGCACTTCTCTTTCGCCCACGGGCCGACGCCTGGCACC
GTTTGTACTTCGTTCGAAAGTACGCGGCCGGAGGAGACAGCCAAAGCGCT
TCTTGAGCGAGTTAAAAGCCGAGTCAGGGACCCGGATGCGCCAGGAGGCA
TTGACACCTGCCATCCCTCGTGAATGAACGCAAATAATATGACCATGCCC
ACCCGTTGGGCGGCTGTGACCGCCGCGGcgctcttctcttcctcgactAC
GTGCTGGAGTTCGCGACCATCTTCCCAGCCAGTACGTGCCAAGCCAACAG
CATCCAGTGCAAACAGCAGTGACCATCGTATGTCGCATACTGAAAAAGGC
GCTTTAATTTTCCTTCATGGTAGCGGAGATGATGGCGGCAACATGGCGTA
TGCCTTGCGTGCGACGGGTTTCACTCAGCGAATGAACGCTCTCGGCATAT
CAGTGCACTGCCCTACAGCCAAACCTCGAAGATACACCTACGCAAGCGGT
GCGCTGAGCAATGTATGGTTTGATCGTGTAGATTTGGACATTTCAGCACC
GGAAGACAAGGCCGGTATGGACGACTCCTTCGCAGAGCTCATGAGTCTGA
TCGAGAAGCTTGAAAACGAGCAAGGTATCTCGTCTTCTCGCATATATTTG
GGCGGCTTCAGCATGGGTGGAGGGATGGCGCTTGCCACATTGGCGAGAGA
AACTAAAGTGCTAGCAGGGATTTTTGCCATTGGCAGCTTCCTGGCCTCAG
ACTCTGCTGTCTACCAGTCGCCACAGCAAAGGACCATGCCACGCATCCTG
CTGGCTCACGGACAATCGGACGCTGTTGTACCCTATGCGTGGGGCGAGGC
CACCGCCAGAAGATTGTATGCCTGCAGTCAAGAGAACTTCGGTGGTGATA
AAGAAAAGGGTCATGGTGAGGAAGACAGGGTAGCTTTTTACggctttccc
cgcctgcaGCACACGTTTGACGAGCGCGTCCTGTCCGTCCTGGCCAGATG
GATCGAGACCGGCGCCCAAAAATTCCCTGACGTAGCAGAAGGCTGCATGC
AAGAAGAGATGACGCggacctctctctcttcacTGCCCGGAGCTCCCTCG
CCATCGTCCGCGGATTTACCTTCCATAGCCACCGCGGCCGCGCAGAGTGC
GTCAGCTACCTTCCCATCGGACGAGGTGCACATGACGCTGGAAAAAGCAG
ACGCACGGCAGACCCAAACACAGGAGCAgacggaagaaaaaggcaaagTC
GCTCCATGTAAGTACCGAGCCGTCTTCCGCGTTCCACAAGACCGAGTCCA
ATCCTTCTTGGACCGCCCTGTGTCTGCGCGCGGGGCGCACTTCTCTTTCG
CCCACGGGCCGACGCCTGGCACCGTTTGTACTTCGTTCGAAAGTACGCGG
CCGGAGGAGACAGCCAAAGCGCTTCTTGAGCGAGTTAAAAGCCGAGTCAG
GGACCCGGATGCGCCAGGAGGCATTGACACCTGCCATCCCTCGTGA

Synonyms

Publications