rna8445, rna8445 (mRNA) Nannochloropsis gaditana

Overview
Namerna8445
Unique Namerna8445
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length635
Alignment locationKK037248.1:691532..692951 -

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Properties
Property NameValue
Productharpin binding protein 1
Orig transcript idgnl|cribi|Naga_100195g2.685.mrna
Orig protein idgnl|cribi|Naga_100195g2.685
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:691532..692951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100195g2gene8186Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22249.1cds8418Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8445rna8445-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8445 ID=rna8445|Name=rna8445|organism=Nannochloropsis gaditana|type=mRNA|length=635bp
AGCATTAAGTGCCCACAGGCATGAGTAGCGGCAGCAGGAATGCCGGCACT
GCCTTCCGCAGTCGTCGAAGACCTTTTCCCGAGGTCTGGGAAGGTGTAGA
TGCTGAGGAGGCGGAAATTACAGTCCATGAGGGTAAACTTTCAAATTATA
GAGCATTAAACCAGCCTAAGGCGCCCTCAAGTCTTGTGCGTACCGCAGGT
GACAAGATTAATGTGGCCGAAAAGGAGAAAATCGATGAGGGGGATGGGCG
GAGGGCAGAGGCTGAGGGCAACAGGCAGGGTGCAGCGGAGGAGGAGGAGG
AAGAAGAGGAACAGGAGGAGAAGGAAATTGGCAACGCGCGAAGGGAGGAT
CAAGGAGACTCGACTTCCTCGTCCTCTACCCGTGTGAGGGCAGACCTTGG
AAACCAGCGTCCATCCAAGCGACACCGTCCGCGTCGTCCGTTTGCCCACA
TCAAGGCCGACATCCTGCGCGCGAAGACCCTCGTGCGTCGTGCTCAGGAA
GAGGCGCGACTCAAGACGCTGCAATCGTCTTCCACCAAGTGGCAGCGGTT
GCTGGAGGGCGTCTGTGGCGGGGCAGGGACGCTGGGTACGCTTGCTTCTG
TGGGGTTGCTGGCGCGGAAGGCCACAGGTAATTGA
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protein sequence of rna8445

>rna8445-protein ID=rna8445-protein|Name=rna8445|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MTRLALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANS
NWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKA
KILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQV
LQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVF
GIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLR
RV
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mRNA from alignment at KK037248.1:691532..692951-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8445 ID=rna8445|Name=rna8445|organism=Nannochloropsis gaditana|type=mRNA|length=1420bp|location=Sequence derived from alignment at KK037248.1:691532..692951- (Nannochloropsis gaditana)
GAATCACACTCTGATCTTGGACTCGCCGATGTATATACCTTGACAGCTTG
GTGTGCTGAGGTAAGACTATACTCGAACAGAATCAGTTCTATAGTATAAT
CTCCTCTGTCTGTACTACACAAGTCAGACAACCCTTCCAACTTTGGTGAC
GAGAAGAGGTCCAGTCACGGAAACGTGACATATGCACTTCCTTCCTATTC
CGAGCCCTTCGGAGCCCGGTGGAAGAGTGCTGGAAGACCGTCCCCCTCAG
GAGTGCCCTCGTGGCCGATGAAGGGTGAGTGACATGGACGGACAGAAAAG
TTGAAAATACTATCCCTAACCCTGTGAGCCTCCAATATTACAGTATGAAC
CTCAACCACTTCAATCATCCAAGAGATGTCTGGCCATCCCTGACATACGC
CTAGTTGAGGCCGTTTCCCTAATACACATCGCGTGAAGGATGTAGTACGT
TGCCAGCACAGCCTTGTCAATAAAAGATAATGACTTAGCCACGCGCTTAT
TGCATACCCAACACCTGATTGATCCTCTAGTTTAAACGCAACACGGAATA
TGACTAGGCTCGCTTTATCATTGGTCTGCTGCCTGTTAGGGTATTCCCTA
ACCATCACTACGGCCTTCGTGCCTGTCAGACAGCCACTGCACACGCATCA
GCCGAAAGACCTGCAACCAAAGGCGTATAAGAGCTTGGCTGCCAACAGCA
ACTGGTTTACCTCCGTGTTGTCTAAAAACAACGGGTCGAAGGGGAAATCT
GCTGCTGATGCTGCAGCGGTGGCGGCTTTGAAGCAAGACCTTTACGCAGT
AGCGAAGAACAAGGACAACGGACTCAAAGCCACGGAAAGCGACAAGGCGA
AGATCTTGTCGCTTGCGTCGGAGCTGATCAAACGTAACCCGACCAAAAAT
ATTGCCACCAGTGATAAGGTGGACGGGACGTGGCGCCTGGTCTATACTAG
CACCTCGGGAGGTTCAGCAGGCAAGCTCGGCCCTTTCGTGGGTCAGGTGC
TGCAAAAGATCGACACGGCCGGAGGAGACTACGTGAATTTCGTGCGTCTT
TTCGGTGGACTTGTGGAGGGTGCCCTGGTGGCGACTTGGGAGGTGAAGGG
CGCAAACGAGTGGAAGGTCATCTTCCAAGACATCACGTTCCGGGTGTTTG
GCATCCCACTTGTGGACAAGAAGCCTCTGTCAGGGCAGGCAGGGCAATGG
AAGCTCACGTATGTAGATGAGGATCTACGAATTTTGACGGCGGCAGCTTT
GACCAATGAGGGTAAGCCGGCCAAAGTTTCCAATATCTACGTGCTACGGC
GGGTCTGAGGGTTACGAGTTTCGTGCTATCTGCAGGACGAGAGAGGATAA
CCCAAACGTGGGTACCAAAAAATTGATAAGTTAAAAAAAAAAACATCGAG
ATTGCGTAGGTCGAAGTAGA
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Coding sequence (CDS) from alignment at KK037248.1:691532..692951-

>rna8445 ID=rna8445|Name=rna8445|organism=Nannochloropsis gaditana|type=CDS|length=759bp|location=Sequence derived from alignment at KK037248.1:691532..692951- (Nannochloropsis gaditana)
ATGACTAGGCTCGCTTTATCATTGGTCTGCTGCCTGTTAGGGTATTCCCT
AACCATCACTACGGCCTTCGTGCCTGTCAGACAGCCACTGCACACGCATC
AGCCGAAAGACCTGCAACCAAAGGCGTATAAGAGCTTGGCTGCCAACAGC
AACTGGTTTACCTCCGTGTTGTCTAAAAACAACGGGTCGAAGGGGAAATC
TGCTGCTGATGCTGCAGCGGTGGCGGCTTTGAAGCAAGACCTTTACGCAG
TAGCGAAGAACAAGGACAACGGACTCAAAGCCACGGAAAGCGACAAGGCG
AAGATCTTGTCGCTTGCGTCGGAGCTGATCAAACGTAACCCGACCAAAAA
TATTGCCACCAGTGATAAGGTGGACGGGACGTGGCGCCTGGTCTATACTA
GCACCTCGGGAGGTTCAGCAGGCAAGCTCGGCCCTTTCGTGGGTCAGGTG
CTGCAAAAGATCGACACGGCCGGAGGAGACTACGTGAATTTCGTGCGTCT
TTTCGGTGGACTTGTGGAGGGTGCCCTGGTGGCGACTTGGGAGGTGAAGG
GCGCAAACGAGTGGAAGGTCATCTTCCAAGACATCACGTTCCGGGTGTTT
GGCATCCCACTTGTGGACAAGAAGCCTCTGTCAGGGCAGGCAGGGCAATG
GAAGCTCACGTATGTAGATGAGGATCTACGAATTTTGACGGCGGCAGCTT
TGACCAATGAGGGTAAGCCGGCCAAAGTTTCCAATATCTACGTGCTACGG
CGGGTCTGA
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Synonyms
Publications