EWM22249.1, cds8418 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|585102707|gb|EWM22249.1| (harpin binding protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 511.916 bits (1317), Expect = 0.000e+0 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query: 1 MTRLALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 252
MTRLALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV
Sbjct: 1 MTRLALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 252
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|553183473|ref|XP_005853904.1| (hypothetical protein NGA_0463700 [Nannochloropsis gaditana CCMP526] >gi|422295159|gb|EKU22458.1| hypothetical protein NGA_0463700 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 484.182 bits (1245), Expect = 1.285e-172 Identity = 239/241 (99.17%), Postives = 240/241 (99.59%), Query Frame = 0
Query: 12 LLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 252
+ GYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV
Sbjct: 1 MKGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 241
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|873242549|emb|CEL91638.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 164.466 bits (415), Expect = 1.290e-46 Identity = 101/250 (40.40%), Postives = 140/250 (56.00%), Query Frame = 0
Query: 4 LALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTA-AALTNEGKPAKVSNIYVLRRV 252
LALS VC + ++ + +PL + L P+ +N F K + DAA+ LK+++ +AK KDNG+K T +++ KILSL +L +P K A S +++G WRLVYT+T G SAGKLGPFVG V Q ID Y+N+V + G V+ L A+W+V G N W+V FQ+I FRVFGIPL + G W++TY+D+D RIL A + A N+YVLRRV
Sbjct: 20 LALSAVCDAFRSPASPLSSSPTLSRPLSRRTARRLSPQML------TNIF------------KPSVDAAS---LKREIGRIAKGKDNGIKVTPAEREKILSLVKQLESSSPIKAAAQSKRLNGLWRLVYTTTPGSSAGKLGPFVGDVTQMIDMDSDVYINYVDI--GPVQAFLEASWDVLGPNRWRVKFQNIGFRVFGIPLAKNE--LKNVGDWRMTYLDDDYRILWARGSRQQPDASAMPENVYVLRRV 244
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|298714517|emb|CBJ27539.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 155.992 bits (393), Expect = 1.984e-43 Identity = 103/255 (40.39%), Postives = 139/255 (54.51%), Query Frame = 0
Query: 2 TRLALSLVCCLLGYSLTITTAF---VPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAA--VAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRR 251
TR A +C LL + I+TAF VP R P+ + + L P+ K K A + A V ALKQ + A NGLKAT + I + L NPTK+I TS+ GTW L+YT+T G S GKLGPF+G+V Q++D A G YVN+VRL G + G L ATW+V ++WKV+F+ I F +FG LV + QAG W L+Y+D+D+R+LTA +L + N+YVL R
Sbjct: 4 TRHARFPLCLLLAAFIPISTAFTGKVPWRLPVAEKRDQVL-PRL---------------------KAKHADEVAVEEVRALKQTILEEAAGTSNGLKATPQQRDAISKAINGLAAANPTKDITTSELATGTWDLIYTTTPGASGGKLGPFIGEVQQEVDIAEGLYVNYVRL--GPLTGRLEATWDVVNKSQWKVVFKSIAFLLFGQQLVKNE--LDQAGLWTLSYLDDDMRVLTARSLERD-----TGNVYVLAR 227
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|551656805|ref|XP_005831175.1| (hypothetical protein GUITHDRAFT_109982 [Guillardia theta CCMP2712] >gi|428175304|gb|EKX44195.1| hypothetical protein GUITHDRAFT_109982 [Guillardia theta CCMP2712]) HSP 1 Score: 119.013 bits (297), Expect = 1.674e-29 Identity = 71/185 (38.38%), Postives = 94/185 (50.81%), Query Frame = 0
Query: 90 NGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQ-----------------------WKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRR 251
NG+ A+E + A+EL K NPT+ ATS +DG WRLV+++T G S+G LGPFVG V Q I Y N + L G VE L A W+V G +W+V F DI F +FGIP+ K+ S Q Q W + Y ++ LR+L A + E A +IYVL R
Sbjct: 16 NGVGASEDLILSVKEKATELAKLNPTQRQATSPMLDGKWRLVFSTTKGPSSGMLGPFVGDVFQDIVLEQEKYFNILEL--GFVEAVLSAHWDVMGQEKWRVFFDDIQFSLFGIPVFKKEFSSSQRDQVLEGLDTLGGTEKEARSSNNGGIWDMAYCNDTLRVLWAYGVQREASKA---SIYVLER 195
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|303291029|ref|XP_003064801.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226453827|gb|EEH51135.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 94.7449 bits (234), Expect = 6.598e-20 Identity = 65/184 (35.33%), Postives = 91/184 (49.46%), Query Frame = 0
Query: 74 VAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDT--------AGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVL 249
+AAL L A A + NG+ E+ +A I + +E+ NPT++ A D W LVYT + G S+GK+GPFVG V Q D +G Y N V ++ VA K KV F+D+T VFG + K G+AG W +T+ E LR+L TN+G N++VL
Sbjct: 60 IAALAGRLRAEAGDA-NGVDRDETQRASIARIIAEIDALNPTRDTAAVDLAGTAWDLVYTDSQGNSSGKIGPFVGAVTQIFDADADPKKPGSGSTYANIVTFGPARLKLRAVAEGVAKKPTTLKVTFEDVTAEVFGRDVFAKPFPKGRAGTWTVTHASEALRVLR----TNQG------NVFVL 232
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|676398181|ref|XP_009042368.1| (hypothetical protein AURANDRAFT_68434, partial [Aureococcus anophagefferens] >gi|323446940|gb|EGB02934.1| hypothetical protein AURANDRAFT_68434, partial [Aureococcus anophagefferens]) HSP 1 Score: 87.4261 bits (215), Expect = 5.606e-16 Identity = 60/165 (36.36%), Postives = 94/165 (56.97%), Query Frame = 0
Query: 73 AVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQK-IDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEW--KVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAAL 234
+ AALK+ L A NG+ A+E + ++A+EL R +++ ++G LV+++++G S+GKLGPFVG V Q +D +VN V L G ++ AL A E + W +V F+ + +FG+ V KP+SG G W + YVD+DLRI+ A +L
Sbjct: 35 STAALKEQLRRTAAPTQNGVGASERTVLTVEAIAAELESR---RDLDAFPALEGAHELVFSTSTGASSGKLGPFVGHVTQTFLDEK--TFVNAVEL--GPLKVALTARREPLDMSGWTYRVTFESMGLSLFGVE-VGSKPISG-GGTWNIRYVDDDLRIMDAPSL 190
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|255082796|ref|XP_002504384.1| (predicted protein [Micromonas commoda] >gi|226519652|gb|ACO65642.1| predicted protein [Micromonas commoda]) HSP 1 Score: 81.2629 bits (199), Expect = 9.825e-15 Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 0
Query: 71 AAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGT-----WRLVYTSTSGGSAGKLGPFVGQVLQKI----DTAG--GDYVNFVRLFGGLVEGALVATWEV----------------KGAN----EWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRR 251
+A ++ L DL A A NG+ T+ D++++ S+ + + P+ N A + VDGT W L+YT ++G S+GK+GPFVG+V Q D G G Y N V LFGGL+ L A E GAN KV F D + V G + + G++G W + +V ++LR+L TN+G N++ L R
Sbjct: 54 SAKLSLLVDDLRA-ASGDANGVDLTDEDRSEVDSILAVIESLCPSDNRAKA-HVDGTLAGTSWDLIYTDSAGNSSGKIGPFVGKVRQVFKPSDDPNGGPGTYTNVVELFGGLLAIKLDAVAEAVTGRGTAGVGAPDASSDGANASSDALKVTFVDTSVWVLGAEVFRRPFPEGRSGTWVMKHVSDELRVLR----TNQG------NVFALGR 253
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|303271735|ref|XP_003055229.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226463203|gb|EEH60481.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 80.4925 bits (197), Expect = 2.406e-14 Identity = 59/182 (32.42%), Postives = 89/182 (48.90%), Query Frame = 0
Query: 68 AADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGA-LVATWEVKGANEWKVIFQDITFRVFGIPLVD------KKPLSGQAGQWKLTYVDEDLRILTAA----ALTNEG 238
AADA +++ K++L+ ++ + GL A++ A I + L NPT N A S VDG W +V+++ S G LGPF G Q+I G YVN + + GA LVAT+ N+ + +TF + L D K W+ T++D + R++ AA ALT EG
Sbjct: 70 AADARSISTAKEELFESMRDANRGLDASDDALAAIEAKIRALEALNPTSNPANSALVDGRWEVVFSTAPPPSNGSLGPFKGTAFQEISLENGSYVNVLSIPPNDWLGARLVATF-APVMNDSRGELWTVTFDAVAVTLFDGAFSPFAKTFKDTTRVWRTTFIDAETRVVRAARTMEALTREG 250
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|551605080|ref|XP_005783977.1| (hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >gi|551617118|ref|XP_005789400.1| hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516] >gi|485637015|gb|EOD31548.1| hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >gi|485642909|gb|EOD36971.1| hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 80.4925 bits (197), Expect = 8.660e-14 Identity = 56/194 (28.87%), Postives = 87/194 (44.85%), Query Frame = 0
Query: 71 AAAVAALKQDLYAVAKN-KDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAA------------LTNEGKPAKVSNIYVLRR 251
++ A LK+ + A+ + D L+ +++ I L RNP + + + G W++ Y++ S G LGP G Q++D Y N + L G + L AT+E +G +V FQ ITF + G+ L G W LTY DED R++ A L+ E A S ++VL R
Sbjct: 39 SSGTADLKKSILALLEPFGDPALRVPDTEFRLIDEQCRLLEARNPARGADALEALQGCWKVRYSNAPPPSNGALGPVRGAAFQRVDVPSRTYTNELSLLGAALFVQLTATFEPRGPLALRVAFQTITFSILGLRLPPVAFPPGTERTWLLTYTDEDTRLVRAGVDGGRSTARDLGLLSREEGEAADSYLFVLTR 232 The following BLAST results are available for this feature:
BLAST of EWM22249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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