EWM22249.1, cds8418 (CDS) Nannochloropsis gaditana

Overview
NameEWM22249.1
Unique Namecds8418
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:691644..692402 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22249.1
Productharpin binding protein 1
Orig transcript idgnl|cribi|Naga_100195g2.685.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:691644..692402 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|585102707|gb|EWM22249.1| (harpin binding protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 511.916 bits (1317), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:    1 MTRLALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 252
            MTRLALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV
Sbjct:    1 MTRLALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 252          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|553183473|ref|XP_005853904.1| (hypothetical protein NGA_0463700 [Nannochloropsis gaditana CCMP526] >gi|422295159|gb|EKU22458.1| hypothetical protein NGA_0463700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 484.182 bits (1245), Expect = 1.285e-172
Identity = 239/241 (99.17%), Postives = 240/241 (99.59%), Query Frame = 0
Query:   12 LLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 252
            + GYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV
Sbjct:    1 MKGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 241          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|873242549|emb|CEL91638.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 164.466 bits (415), Expect = 1.290e-46
Identity = 101/250 (40.40%), Postives = 140/250 (56.00%), Query Frame = 0
Query:    4 LALSLVCCLLGYSLTITTAFVPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTA-AALTNEGKPAKVSNIYVLRRV 252
            LALS VC       +  ++   + +PL     + L P+        +N F            K + DAA+   LK+++  +AK KDNG+K T +++ KILSL  +L   +P K  A S +++G WRLVYT+T G SAGKLGPFVG V Q ID     Y+N+V +  G V+  L A+W+V G N W+V FQ+I FRVFGIPL   +      G W++TY+D+D RIL A  +       A   N+YVLRRV
Sbjct:   20 LALSAVCDAFRSPASPLSSSPTLSRPLSRRTARRLSPQML------TNIF------------KPSVDAAS---LKREIGRIAKGKDNGIKVTPAEREKILSLVKQLESSSPIKAAAQSKRLNGLWRLVYTTTPGSSAGKLGPFVGDVTQMIDMDSDVYINYVDI--GPVQAFLEASWDVLGPNRWRVKFQNIGFRVFGIPLAKNE--LKNVGDWRMTYLDDDYRILWARGSRQQPDASAMPENVYVLRRV 244          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|298714517|emb|CBJ27539.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.992 bits (393), Expect = 1.984e-43
Identity = 103/255 (40.39%), Postives = 139/255 (54.51%), Query Frame = 0
Query:    2 TRLALSLVCCLLGYSLTITTAF---VPVRQPLHTHQPKDLQPKAYKSLAANSNWFTSVLSKNNGSKGKSAADAAA--VAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRR 251
            TR A   +C LL   + I+TAF   VP R P+   + + L P+                      K K A + A   V ALKQ +   A    NGLKAT   +  I    + L   NPTK+I TS+   GTW L+YT+T G S GKLGPF+G+V Q++D A G YVN+VRL  G + G L ATW+V   ++WKV+F+ I F +FG  LV  +    QAG W L+Y+D+D+R+LTA +L  +       N+YVL R
Sbjct:    4 TRHARFPLCLLLAAFIPISTAFTGKVPWRLPVAEKRDQVL-PRL---------------------KAKHADEVAVEEVRALKQTILEEAAGTSNGLKATPQQRDAISKAINGLAAANPTKDITTSELATGTWDLIYTTTPGASGGKLGPFIGEVQQEVDIAEGLYVNYVRL--GPLTGRLEATWDVVNKSQWKVVFKSIAFLLFGQQLVKNE--LDQAGLWTLSYLDDDMRVLTARSLERD-----TGNVYVLAR 227          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|551656805|ref|XP_005831175.1| (hypothetical protein GUITHDRAFT_109982 [Guillardia theta CCMP2712] >gi|428175304|gb|EKX44195.1| hypothetical protein GUITHDRAFT_109982 [Guillardia theta CCMP2712])

HSP 1 Score: 119.013 bits (297), Expect = 1.674e-29
Identity = 71/185 (38.38%), Postives = 94/185 (50.81%), Query Frame = 0
Query:   90 NGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQ-----------------------WKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRR 251
            NG+ A+E     +   A+EL K NPT+  ATS  +DG WRLV+++T G S+G LGPFVG V Q I      Y N + L  G VE  L A W+V G  +W+V F DI F +FGIP+  K+  S Q  Q                       W + Y ++ LR+L A  +  E   A   +IYVL R
Sbjct:   16 NGVGASEDLILSVKEKATELAKLNPTQRQATSPMLDGKWRLVFSTTKGPSSGMLGPFVGDVFQDIVLEQEKYFNILEL--GFVEAVLSAHWDVMGQEKWRVFFDDIQFSLFGIPVFKKEFSSSQRDQVLEGLDTLGGTEKEARSSNNGGIWDMAYCNDTLRVLWAYGVQREASKA---SIYVLER 195          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|303291029|ref|XP_003064801.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226453827|gb|EEH51135.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 94.7449 bits (234), Expect = 6.598e-20
Identity = 65/184 (35.33%), Postives = 91/184 (49.46%), Query Frame = 0
Query:   74 VAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDT--------AGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVL 249
            +AAL   L A A +  NG+   E+ +A I  + +E+   NPT++ A  D     W LVYT + G S+GK+GPFVG V Q  D         +G  Y N V      ++   VA    K     KV F+D+T  VFG  +  K    G+AG W +T+  E LR+L     TN+G      N++VL
Sbjct:   60 IAALAGRLRAEAGDA-NGVDRDETQRASIARIIAEIDALNPTRDTAAVDLAGTAWDLVYTDSQGNSSGKIGPFVGAVTQIFDADADPKKPGSGSTYANIVTFGPARLKLRAVAEGVAKKPTTLKVTFEDVTAEVFGRDVFAKPFPKGRAGTWTVTHASEALRVLR----TNQG------NVFVL 232          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|676398181|ref|XP_009042368.1| (hypothetical protein AURANDRAFT_68434, partial [Aureococcus anophagefferens] >gi|323446940|gb|EGB02934.1| hypothetical protein AURANDRAFT_68434, partial [Aureococcus anophagefferens])

HSP 1 Score: 87.4261 bits (215), Expect = 5.606e-16
Identity = 60/165 (36.36%), Postives = 94/165 (56.97%), Query Frame = 0
Query:   73 AVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQK-IDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEW--KVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAAL 234
            + AALK+ L   A    NG+ A+E     + ++A+EL  R   +++     ++G   LV+++++G S+GKLGPFVG V Q  +D     +VN V L  G ++ AL A  E    + W  +V F+ +   +FG+  V  KP+SG  G W + YVD+DLRI+ A +L
Sbjct:   35 STAALKEQLRRTAAPTQNGVGASERTVLTVEAIAAELESR---RDLDAFPALEGAHELVFSTSTGASSGKLGPFVGHVTQTFLDEK--TFVNAVEL--GPLKVALTARREPLDMSGWTYRVTFESMGLSLFGVE-VGSKPISG-GGTWNIRYVDDDLRIMDAPSL 190          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|255082796|ref|XP_002504384.1| (predicted protein [Micromonas commoda] >gi|226519652|gb|ACO65642.1| predicted protein [Micromonas commoda])

HSP 1 Score: 81.2629 bits (199), Expect = 9.825e-15
Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 0
Query:   71 AAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGT-----WRLVYTSTSGGSAGKLGPFVGQVLQKI----DTAG--GDYVNFVRLFGGLVEGALVATWEV----------------KGAN----EWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRR 251
            +A ++ L  DL A A    NG+  T+ D++++ S+ + +    P+ N A +  VDGT     W L+YT ++G S+GK+GPFVG+V Q      D  G  G Y N V LFGGL+   L A  E                  GAN      KV F D +  V G  +  +    G++G W + +V ++LR+L     TN+G      N++ L R
Sbjct:   54 SAKLSLLVDDLRA-ASGDANGVDLTDEDRSEVDSILAVIESLCPSDNRAKA-HVDGTLAGTSWDLIYTDSAGNSSGKIGPFVGKVRQVFKPSDDPNGGPGTYTNVVELFGGLLAIKLDAVAEAVTGRGTAGVGAPDASSDGANASSDALKVTFVDTSVWVLGAEVFRRPFPEGRSGTWVMKHVSDELRVLR----TNQG------NVFALGR 253          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|303271735|ref|XP_003055229.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226463203|gb|EEH60481.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 80.4925 bits (197), Expect = 2.406e-14
Identity = 59/182 (32.42%), Postives = 89/182 (48.90%), Query Frame = 0
Query:   68 AADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGA-LVATWEVKGANEWKVIFQDITFRVFGIPLVD------KKPLSGQAGQWKLTYVDEDLRILTAA----ALTNEG 238
            AADA +++  K++L+   ++ + GL A++   A I +    L   NPT N A S  VDG W +V+++    S G LGPF G   Q+I    G YVN + +      GA LVAT+     N+ +     +TF    + L D       K        W+ T++D + R++ AA    ALT EG
Sbjct:   70 AADARSISTAKEELFESMRDANRGLDASDDALAAIEAKIRALEALNPTSNPANSALVDGRWEVVFSTAPPPSNGSLGPFKGTAFQEISLENGSYVNVLSIPPNDWLGARLVATF-APVMNDSRGELWTVTFDAVAVTLFDGAFSPFAKTFKDTTRVWRTTFIDAETRVVRAARTMEALTREG 250          
BLAST of EWM22249.1 vs. NCBI_GenBank
Match: gi|551605080|ref|XP_005783977.1| (hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >gi|551617118|ref|XP_005789400.1| hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516] >gi|485637015|gb|EOD31548.1| hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >gi|485642909|gb|EOD36971.1| hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 80.4925 bits (197), Expect = 8.660e-14
Identity = 56/194 (28.87%), Postives = 87/194 (44.85%), Query Frame = 0
Query:   71 AAAVAALKQDLYAVAKN-KDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAA------------LTNEGKPAKVSNIYVLRR 251
            ++  A LK+ + A+ +   D  L+  +++   I      L  RNP +     + + G W++ Y++    S G LGP  G   Q++D     Y N + L G  +   L AT+E +G    +V FQ ITF + G+ L       G    W LTY DED R++ A              L+ E   A  S ++VL R
Sbjct:   39 SSGTADLKKSILALLEPFGDPALRVPDTEFRLIDEQCRLLEARNPARGADALEALQGCWKVRYSNAPPPSNGALGPVRGAAFQRVDVPSRTYTNELSLLGAALFVQLTATFEPRGPLALRVAFQTITFSILGLRLPPVAFPPGTERTWLLTYTDEDTRLVRAGVDGGRSTARDLGLLSREEGEAADSYLFVLTR 232          
The following BLAST results are available for this feature:
BLAST of EWM22249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102707|gb|EWM22249.1|0.000e+0100.00harpin binding protein 1 [Nannochloropsis gaditana... [more]
gi|553183473|ref|XP_005853904.1|1.285e-17299.17hypothetical protein NGA_0463700 [Nannochloropsis ... [more]
gi|873242549|emb|CEL91638.1|1.290e-4640.40unnamed protein product [Vitrella brassicaformis C... [more]
gi|298714517|emb|CBJ27539.1|1.984e-4340.39conserved unknown protein [Ectocarpus siliculosus][more]
gi|551656805|ref|XP_005831175.1|1.674e-2938.38hypothetical protein GUITHDRAFT_109982 [Guillardia... [more]
gi|303291029|ref|XP_003064801.1|6.598e-2035.33predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|676398181|ref|XP_009042368.1|5.606e-1636.36hypothetical protein AURANDRAFT_68434, partial [Au... [more]
gi|255082796|ref|XP_002504384.1|9.825e-1532.55predicted protein [Micromonas commoda] >gi|2265196... [more]
gi|303271735|ref|XP_003055229.1|2.406e-1432.42predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|551605080|ref|XP_005783977.1|8.660e-1428.87hypothetical protein EMIHUDRAFT_231716 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8445rna8445Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications