rna8436, rna8436 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8436
Unique Name	rna8436
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	845
Alignment location	KK037248.1:675607..676162 -

Link to JBrowse

Properties


Property Name	Value
Product	signal recognition particle protein
Orig transcript id	gnl\|cribi\|Naga_102501g1.8860.mrna
Orig protein id	gnl\|cribi\|Naga_102501g1.8860
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:675607..676162 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102501g1	gene8177	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8436	rna8436-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22264.1	cds8409	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:675607..676162-
coding sequence from alignment at KK037248.1:675607..676162-

mRNA sequence

>rna8436 ID=rna8436|Name=rna8436|organism=Nannochloropsis gaditana|type=mRNA|length=845bp
TAGGGCTCCGCTCTTGCACTTTGTCGTGCTTCTCCTCGCCTCCGTAGTCT
AGCTGTGTCACCCTCTGTCCCGCCTCCTCTTTTTCTCTTTTTCTTCCTCT
CCGTCTAACCCTCCCTCCCTCCCTCCCTCTTTTCCTTCCTTCCCTCCCTA
GATGATGACCGGCACCTTCGATTTCGATGACTTCATGACCCAGACCCGCA
TGATTTCCAAGATGGGCAGCCTCTCAGGCATGATGAAGATGATCCCGGGC
ATGGCCGGCGTCCTTCCCGGCGACGCCATGTACGAGGGCGAGAAGAAGCT
CTTCGCCTACCAGGAAATGATCAACGTGATGGAGCCGGAGGAGCGGAAAG
ACCCGAAGATGCTTCTGGACAACCCCGGCGCGGACCTACGATGGAAGCGC
ATCGTGGAAGAGAGCGGTCGGTCCATGGAGGAGGCGAAGAACTTCCAGCG
AGAGTTTTCGAACCTGCGTTTGATGATGACGCGTATGTCAAGCCGACTCA
GCGAGAAGACAGGCTTTGACCCCAGCAAGGGCAAGGACGCCGCCATTGAC
GAGTCGGCGCTGCAGGAGCTAGACATGAAGAATCTGGCGATGATGAGTCA
GAACAGGCAAGCGCGGCGAAAGCTGGAAAAACAATCTCGTCGAGCAGGAA
GTGATGATGACACACCGCAAAAAGGCTTTGGAGGAGGAGGTGGTGGGGGA
GGAGGCAAGAAGAAGAAAAAGCGATGATTCCGAATTACAATATATTGATG
GATAATGAAGAAGGCAACGGGATGTCACGGGTGAAGGCAAGAAGGCAAAA
ACGAAATGTCGGCTACATCGGACCTCTGAATGATATCCTTCCTCC

protein sequence of rna8436

>rna8436-protein ID=rna8436-protein|Name=rna8436|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MDVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGA
GKTTAAAKLALYCQVS

mRNA from alignment at KK037248.1:675607..676162-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8436 ID=rna8436|Name=rna8436|organism=Nannochloropsis gaditana|type=mRNA|length=556bp|location=Sequence derived from alignment at KK037248.1:675607..676162- (Nannochloropsis gaditana)
ATGGACGTGACCAAAGGCGTGACCCCCGACCAGGAGTTCGTCAAGATCAT
GTACGACGAGCTCGTCGACCTGATGGGCGCCGAGCAGGCGGAACTCGCGC
AGGTGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCCCT
CTCTCCCTCCCTTCCTTCTTTCCTCCCTTCTTTCCTAATTTCCGCCCTAT
CGTCCCTGACGTGCCACCCACTCGCCGGCCTCCCCCAACCACCTCCCTCC
TTCCCTCCCCCCCTCTTTCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTCAGGCCAGCAAGCCCCCCACTGTCATCCTCCTGGCTGGGCTGC
AGGGTGCCGGTAAAACCACGGCTGCCGCCAAGCTTGCCCTCTACTGCCAG
TCCCGCGCCGAGAAAGCCGAGGCCTTTGAAAAGGTCCACCCTCCTCCCTC
CCTCCCTCCCCTTCCCTCCCTCCCTCCCTCCCTCCCCCCCACTGTTCCTT
CCTTCTTCCCTTCCTTCTCCTCTTTGTCACTTCGTTGCCCGTCTAGGGTG
TCCTGA

Coding sequence (CDS) from alignment at KK037248.1:675607..676162-

>rna8436 ID=rna8436|Name=rna8436|organism=Nannochloropsis gaditana|type=CDS|length=603bp|location=Sequence derived from alignment at KK037248.1:675607..676162- (Nannochloropsis gaditana)
GGTGTCCTGAGCCAGCAAGCCCCCCACTGTCATCCTCCTGGCTGGGCTGC
AGGGTGCCGGTAAAACCACGGCTGCCGCCAAGCTTGCCCTCTACTGCCAA
TGGACGTGACCAAAGGCGTGACCCCCGACCAGGAGTTCGTCAAGATCATG
TACGACGAGCTCGTCGACCTGATGGGCGCCGAGCAGGCGGAACTCGCGCA
GGGTGTCCTGAGCCAGCAAGCCCCCCACTGTCATCCTCCTGGCTGGGCTG
CAGGGTGCCGGTAAAACCACGGCTGCCGCCAAGCTTGCCCTCTACTGCCA
ATGGACGTGACCAAAGGCGTGACCCCCGACCAGGAGTTCGTCAAGATCAT
GTACGACGAGCTCGTCGACCTGATGGGCGCCGAGCAGGCGGAACTCGCGC
AGGGTGTCCTGAGCCAGCAAGCCCCCCACTGTCATCCTCCTGGCTGGGCT
GCAGGGTGCCGGTAAAACCACGGCTGCCGCCAAGCTTGCCCTCTACTGCC
AATGGACGTGACCAAAGGCGTGACCCCCGACCAGGAGTTCGTCAAGATCA
TGTACGACGAGCTCGTCGACCTGATGGGCGCCGAGCAGGCGGAACTCGCG
CAG

Synonyms

Publications