EWM22264.1, cds8409 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|585102724|gb|EWM22264.1| (signal recognition particle protein [Nannochloropsis gaditana]) HSP 1 Score: 132.109 bits (331), Expect = 3.507e-39 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 Query: 1 MDVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQVS 66 MDVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQVS Sbjct: 1 MDVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQVS 66
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|515875457|ref|WP_017306040.1| (signal recognition particle protein [Spirulina subsalsa]) HSP 1 Score: 91.2781 bits (225), Expect = 5.502e-20 Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +V GV PDQ+FVKI+YD+LV++MG A LAQA PPTVIL+AGLQG GKTTA AKLALY + Sbjct: 63 EVISGVRPDQQFVKIVYDQLVNVMGESNAPLAQADTPPTVILMAGLQGTGKTTATAKLALYLR 125
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|505033021|ref|WP_015220123.1| (signal recognition particle protein [Cyanobacterium aponinum] >gi|428684932|gb|AFZ54399.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cyanobacterium aponinum PCC 10605]) HSP 1 Score: 90.1225 bits (222), Expect = 1.149e-19 Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +V GV P Q+F+KI+YDELV +MG A LA+A KPP V+L+AGLQGAGKTTA AKLALY Q Sbjct: 63 EVISGVNPQQQFIKIVYDELVKVMGESNAPLAEADKPPRVVLMAGLQGAGKTTATAKLALYLQ 125
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|1210207752|dbj|BAZ26793.1| (signal recognition particle protein [Scytonema sp. NIES-4073]) HSP 1 Score: 89.7373 bits (221), Expect = 1.776e-19 Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +V GV PDQ+F+KI+YDELV +MG E LAQA++PPTV+L+AGLQG GKTTA AKLAL+ + Sbjct: 63 EVIAGVQPDQQFIKIVYDELVKVMGEENVPLAQANQPPTVVLMAGLQGTGKTTATAKLALHLR 125
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|495454248|ref|WP_008178942.1| (signal recognition particle protein [Moorea producens] >gi|332355376|gb|EGJ34840.1| signal recognition particle subunit FFH/SRP54 [Moorea producens 3L] >gi|1130581386|gb|OLT63621.1| signal recognition particle protein [Moorea producens PAL]) HSP 1 Score: 89.7373 bits (221), Expect = 1.975e-19 Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +VT GV PDQ+F+KI+YDELV +MG LAQA PPTV+L+AGLQG GKTTA+AKLAL+ + Sbjct: 63 EVTSGVRPDQQFIKIVYDELVQVMGETNVPLAQADTPPTVVLMAGLQGTGKTTASAKLALHLR 125
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|1002986340|ref|WP_061430867.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|1002151629|gb|KXS93013.1| signal recognition particle [Microcystis aeruginosa NIES-88]) HSP 1 Score: 89.3521 bits (220), Expect = 2.133e-19 Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +V GV P Q+F+KI+YDELV +MG LAQA KPPTVIL+AGLQG GKTTA AKLALY + Sbjct: 63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|488883920|ref|WP_002796145.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|389833087|emb|CCI22684.1| Signal recognition particle protein [Microcystis aeruginosa PCC 9809] >gi|1158729274|gb|OPF15054.1| signal recognition particle protein [Microcystis aeruginosa KW]) HSP 1 Score: 89.3521 bits (220), Expect = 2.154e-19 Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +V GV P Q+F+KI+YDELV +MG LAQA KPPTVIL+AGLQG GKTTA AKLALY + Sbjct: 63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|917761924|ref|WP_052275929.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|914398965|gb|AKV66634.1| Signal recognition particle subunit Ffh SRP54 [Microcystis panniformis FACHB-1757]) HSP 1 Score: 89.3521 bits (220), Expect = 2.154e-19 Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +V GV P Q+F+KI+YDELV +MG LAQA KPPTVIL+AGLQG GKTTA AKLALY + Sbjct: 63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|488827485|ref|WP_002739891.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|440172771|gb|ELP52255.1| signal recognition particle protein [Microcystis aeruginosa TAIHU98] >gi|513469619|gb|EPF17415.1| hypothetical protein MAESPC_04768 [Microcystis aeruginosa SPC777]) HSP 1 Score: 89.3521 bits (220), Expect = 2.176e-19 Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +V GV P Q+F+KI+YDELV +MG LAQA KPPTVIL+AGLQG GKTTA AKLALY + Sbjct: 63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|488843442|ref|WP_002755848.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|389677199|emb|CCH93837.1| Signal recognition particle protein [Microcystis aeruginosa PCC 9432] >gi|389824313|emb|CCI26812.1| Signal recognition particle protein [Microcystis aeruginosa PCC 9808]) HSP 1 Score: 89.3521 bits (220), Expect = 2.197e-19 Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0 Query: 2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64 +V GV P Q+F+KI+YDELV +MG LAQA KPPTVIL+AGLQG GKTTA AKLALY + Sbjct: 63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125 The following BLAST results are available for this feature:
BLAST of EWM22264.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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