EWM22264.1, cds8409 (CDS) Nannochloropsis gaditana

Overview
NameEWM22264.1
Unique Namecds8409
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:676061..676162 -
Alignment locationKK037248.1:675764..675852 -
Alignment locationKK037248.1:675607..675616 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22264.1
Productsignal recognition particle protein
Orig transcript idgnl|cribi|Naga_102501g1.8860.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:676061..676162 -
KK037248.1supercontigKK037248.1:675764..675852 -
KK037248.1supercontigKK037248.1:675607..675616 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0048500signal recognition particle
Vocabulary: INTERPRO
TermDefinition
IPR004780SRP_Ffh
IPR000897SRP54_GTPase_dom
IPR027417P-loop_NTPase
Homology
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|585102724|gb|EWM22264.1| (signal recognition particle protein [Nannochloropsis gaditana])

HSP 1 Score: 132.109 bits (331), Expect = 3.507e-39
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
Query:    1 MDVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQVS 66
            MDVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQVS
Sbjct:    1 MDVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQVS 66          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|515875457|ref|WP_017306040.1| (signal recognition particle protein [Spirulina subsalsa])

HSP 1 Score: 91.2781 bits (225), Expect = 5.502e-20
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +V  GV PDQ+FVKI+YD+LV++MG   A LAQA  PPTVIL+AGLQG GKTTA AKLALY +
Sbjct:   63 EVISGVRPDQQFVKIVYDQLVNVMGESNAPLAQADTPPTVILMAGLQGTGKTTATAKLALYLR 125          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|505033021|ref|WP_015220123.1| (signal recognition particle protein [Cyanobacterium aponinum] >gi|428684932|gb|AFZ54399.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cyanobacterium aponinum PCC 10605])

HSP 1 Score: 90.1225 bits (222), Expect = 1.149e-19
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +V  GV P Q+F+KI+YDELV +MG   A LA+A KPP V+L+AGLQGAGKTTA AKLALY Q
Sbjct:   63 EVISGVNPQQQFIKIVYDELVKVMGESNAPLAEADKPPRVVLMAGLQGAGKTTATAKLALYLQ 125          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|1210207752|dbj|BAZ26793.1| (signal recognition particle protein [Scytonema sp. NIES-4073])

HSP 1 Score: 89.7373 bits (221), Expect = 1.776e-19
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +V  GV PDQ+F+KI+YDELV +MG E   LAQA++PPTV+L+AGLQG GKTTA AKLAL+ +
Sbjct:   63 EVIAGVQPDQQFIKIVYDELVKVMGEENVPLAQANQPPTVVLMAGLQGTGKTTATAKLALHLR 125          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|495454248|ref|WP_008178942.1| (signal recognition particle protein [Moorea producens] >gi|332355376|gb|EGJ34840.1| signal recognition particle subunit FFH/SRP54 [Moorea producens 3L] >gi|1130581386|gb|OLT63621.1| signal recognition particle protein [Moorea producens PAL])

HSP 1 Score: 89.7373 bits (221), Expect = 1.975e-19
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +VT GV PDQ+F+KI+YDELV +MG     LAQA  PPTV+L+AGLQG GKTTA+AKLAL+ +
Sbjct:   63 EVTSGVRPDQQFIKIVYDELVQVMGETNVPLAQADTPPTVVLMAGLQGTGKTTASAKLALHLR 125          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|1002986340|ref|WP_061430867.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|1002151629|gb|KXS93013.1| signal recognition particle [Microcystis aeruginosa NIES-88])

HSP 1 Score: 89.3521 bits (220), Expect = 2.133e-19
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +V  GV P Q+F+KI+YDELV +MG     LAQA KPPTVIL+AGLQG GKTTA AKLALY +
Sbjct:   63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|488883920|ref|WP_002796145.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|389833087|emb|CCI22684.1| Signal recognition particle protein [Microcystis aeruginosa PCC 9809] >gi|1158729274|gb|OPF15054.1| signal recognition particle protein [Microcystis aeruginosa KW])

HSP 1 Score: 89.3521 bits (220), Expect = 2.154e-19
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +V  GV P Q+F+KI+YDELV +MG     LAQA KPPTVIL+AGLQG GKTTA AKLALY +
Sbjct:   63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|917761924|ref|WP_052275929.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|914398965|gb|AKV66634.1| Signal recognition particle subunit Ffh SRP54 [Microcystis panniformis FACHB-1757])

HSP 1 Score: 89.3521 bits (220), Expect = 2.154e-19
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +V  GV P Q+F+KI+YDELV +MG     LAQA KPPTVIL+AGLQG GKTTA AKLALY +
Sbjct:   63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|488827485|ref|WP_002739891.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|440172771|gb|ELP52255.1| signal recognition particle protein [Microcystis aeruginosa TAIHU98] >gi|513469619|gb|EPF17415.1| hypothetical protein MAESPC_04768 [Microcystis aeruginosa SPC777])

HSP 1 Score: 89.3521 bits (220), Expect = 2.176e-19
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +V  GV P Q+F+KI+YDELV +MG     LAQA KPPTVIL+AGLQG GKTTA AKLALY +
Sbjct:   63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125          
BLAST of EWM22264.1 vs. NCBI_GenBank
Match: gi|488843442|ref|WP_002755848.1| (signal recognition particle protein [Microcystis aeruginosa] >gi|389677199|emb|CCH93837.1| Signal recognition particle protein [Microcystis aeruginosa PCC 9432] >gi|389824313|emb|CCI26812.1| Signal recognition particle protein [Microcystis aeruginosa PCC 9808])

HSP 1 Score: 89.3521 bits (220), Expect = 2.197e-19
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    2 DVTKGVTPDQEFVKIMYDELVDLMGAEQAELAQASKPPTVILLAGLQGAGKTTAAAKLALYCQ 64
            +V  GV P Q+F+KI+YDELV +MG     LAQA KPPTVIL+AGLQG GKTTA AKLALY +
Sbjct:   63 EVISGVNPGQQFIKIVYDELVKIMGESNVPLAQADKPPTVILMAGLQGTGKTTATAKLALYLR 125          
The following BLAST results are available for this feature:
BLAST of EWM22264.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102724|gb|EWM22264.1|3.507e-39100.00signal recognition particle protein [Nannochlorops... [more]
gi|515875457|ref|WP_017306040.1|5.502e-2068.25signal recognition particle protein [Spirulina sub... [more]
gi|505033021|ref|WP_015220123.1|1.149e-1966.67signal recognition particle protein [Cyanobacteriu... [more]
gi|1210207752|dbj|BAZ26793.1|1.776e-1965.08signal recognition particle protein [Scytonema sp.... [more]
gi|495454248|ref|WP_008178942.1|1.975e-1965.08signal recognition particle protein [Moorea produc... [more]
gi|1002986340|ref|WP_061430867.1|2.133e-1966.67signal recognition particle protein [Microcystis a... [more]
gi|488883920|ref|WP_002796145.1|2.154e-1966.67signal recognition particle protein [Microcystis a... [more]
gi|917761924|ref|WP_052275929.1|2.154e-1966.67signal recognition particle protein [Microcystis a... [more]
gi|488827485|ref|WP_002739891.1|2.176e-1966.67signal recognition particle protein [Microcystis a... [more]
gi|488843442|ref|WP_002755848.1|2.197e-1966.67signal recognition particle protein [Microcystis a... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8436rna8436Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications