rna8429, rna8429 (mRNA) Nannochloropsis gaditana

Overview
Namerna8429
Unique Namerna8429
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length540
Alignment locationKK037248.1:661034..661670 +

Link to JBrowse

Properties
Property NameValue
ProductRAVE complex protein Rav1
Orig transcript idgnl|cribi|Naga_100979g2.3000.mrna
Orig protein idgnl|cribi|Naga_100979g2.3000
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:661034..661670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100979g2gene8170Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8429rna8429-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22272.1cds8402Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8429 ID=rna8429|Name=rna8429|organism=Nannochloropsis gaditana|type=mRNA|length=540bp
ATGCGCCTGGAGAAGCGGGAGCCGTACATCCGGGTCGCCTCCTTCAAGCG
ACACCCGCAGACAGGAGAGCTTCTCCCCGCCGAGGCCAGCAAGGGGGAAA
ATGAGGAACGCATACAAGTCGGGGACGCGTTGGTGGCAGTGAACGGGTAT
TCGCTGGTGGGAATGAGCTTGGAGCAGGCGGTGGGGGTGATGCGCTCGGT
TGGCGGTGCCATTGGGGGAGGCGGGGAGGGAGGGACCGGGGGAGGGGCTG
GGGGAGGGGTGGTCACATTGGGGTTCAAACGCGCTGGCCACTTGGGCGAA
GAGGCAGCAGAAAAGGTGACACGGCGGGTCTCGAGGGTCCCTTCCATCTT
GGACTTCAGCGGTGCAAGCAAACACCACCGACAACAGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGGAAGAAGAGGAGGCGGAACAGCTGATTCTGGGC
CGCTTAAAGACCATAGGACCGGCTTTCTCTGGCAGTGGAGCTTGCAAGGG
CAAGGCTCCCTTCCCCCCGCTCTTCCCCCCTTCGATGTAG
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protein sequence of rna8429

>rna8429-protein ID=rna8429-protein|Name=rna8429|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MQAALLYLAAGRRTTLSNLAKAAREDKKALARLLQFDLNSARGRQVVEKN
AYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVE
SGLHPDLGGDERGGAVRVGRCTP
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mRNA from alignment at KK037248.1:661034..661670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8429 ID=rna8429|Name=rna8429|organism=Nannochloropsis gaditana|type=mRNA|length=637bp|location=Sequence derived from alignment at KK037248.1:661034..661670+ (Nannochloropsis gaditana)
ATGCAAGCTGCCCTTCTCTACTTGGCGGCAGGACGTCGCACCACCTTGAG
TAACCTGGCCAAAGCGGCGCGGGAGGATAAAAAAGCCTTGGCACGGTTGC
TGCAGTTCGATTTGAACAGCGCGCGGGGAcggcaggtggtggagaagaaC
GCCTACCATCTCCTCCGGCACCGGGCTTATCTGAGTGCGGCCGCGCTCTT
CCTTTTGCCCGATCCCCCCCAACTGACCCTGTGTTTAGACGTGCTGGTCC
GGCATATGAAAGATCCGCTCCTCGCCCTTTTGGTGGCCCGACTGGTGGAG
AGTGGCCTCCACCCCGACTtgggaggggatgaaagggggggggcggttcG
CGTGGGGGTAGGGCCCGTGACCCGGGAGCTCCTGGAGGCGGAAGTGCTGC
CCTGGgccaagggggaaggggagggcggggggttgGAGGCTGCAGTGTGC
TTGTGGttggggcgagggagggaggccttaCAAGcgctggaggacggggc
ggaggcgcaCCAGGGGGACCTGCTCTTGGCCCTTGGCCTCAGCCACGCGG
GGGATGTGGACGCGGGTGCCTCATTCAGCCCCGGGCtcgaccctttcctc
cgcctttctccctGCGACGCAGCGCTGTACGCCTTGA
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Coding sequence (CDS) from alignment at KK037248.1:661034..661670+

>rna8429 ID=rna8429|Name=rna8429|organism=Nannochloropsis gaditana|type=CDS|length=744bp|location=Sequence derived from alignment at KK037248.1:661034..661670+ (Nannochloropsis gaditana)
ATGCAAGCTGCCCTTCTCTACTTGGCGGCAGGACGTCGCACCACCTTGAG
TAACCTGGCCAAAGCGGCGCGGGAGGATAAAAAAGCCTTGGCACGGTTGC
TGCAGTTCGATTTGAACAGCGCGCGGGGAcggcaggtggtggagaagaaC
GCCTACCATCTCCTCCGGCACCGGGCTTATCTGAGTGCGGCCGCGCTCTT
CCTTTTGCCCGATCCCCCCCAACTGACCCTGTGTTTAGACGTGCTGGTCC
GGCATATGAAAGATCCGCTCCTCGCCCTTTTGGTGGCCCGACTGGTGGAG
AGTGGCCTCCACCCCGACTtgggaggggatgaaagggggggggcggttcG
CGTGGGGCGCTGTACGCCTTGAATGCAAGCTGCCCTTCTCTACTTGGCGG
CAGGACGTCGCACCACCTTGAGTAACCTGGCCAAAGCGGCGCGGGAGGAT
AAAAAAGCCTTGGCACGGTTGCTGCAGTTCGATTTGAACAGCGCGCGGGG
AcggcaggtggtggagaagaaCGCCTACCATCTCCTCCGGCACCGGGCTT
ATCTGAGTGCGGCCGCGCTCTTCCTTTTGCCCGATCCCCCCCAACTGACC
CTGTGTTTAGACGTGCTGGTCCGGCATATGAAAGATCCGCTCCTCGCCCT
TTTGGTGGCCCGACTGGTGGAGAGTGGCCTCCACCCCGACTtgggagggg
atgaaagggggggggcggttcGCGTGGGGCGCTGTACGCCTTGA
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Synonyms
Publications