EWM22272.1, cds8402 (CDS) Nannochloropsis gaditana

Overview
NameEWM22272.1
Unique Namecds8402
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:661034..661390 +
Alignment locationKK037248.1:661656..661670 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22272.1
ProductRAVE complex protein Rav1
Orig transcript idgnl|cribi|Naga_100979g2.3000.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:661034..661390 +
KK037248.1supercontigKK037248.1:661656..661670 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR022033Rav1p_C
Homology
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|585102738|gb|EWM22272.1| (RAVE complex protein Rav1 [Nannochloropsis gaditana])

HSP 1 Score: 242.276 bits (617), Expect = 5.365e-81
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAAREDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPDLGGDERGGAVRVGRCTP 123
            MQAALLYLAAGRRTTLSNLAKAAREDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPDLGGDERGGAVRVGRCTP
Sbjct:    1 MQAALLYLAAGRRTTLSNLAKAAREDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPDLGGDERGGAVRVGRCTP 123          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|1173958187|gb|OQS04586.1| (hypothetical protein THRCLA_03193, partial [Thraustotheca clavata])

HSP 1 Score: 90.1225 bits (222), Expect = 1.350e-18
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAARED-KKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVES 101
            M   LLYLA G++  LS LAK ++ D  K L+  L  D N  R +    +NAY LLR + Y  AAA FLLP PP+L   L + +  M DP LA+++ARLVES
Sbjct:    6 MSVCLLYLALGKKNILSALAKVSKLDSNKTLSDFLMHDFNDERWKVAAVRNAYSLLRKKQYDLAAAFFLLPQPPRLQEALRICIGRMNDPSLAMVIARLVES 107          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|224012928|ref|XP_002295116.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969078|gb|EED87420.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 87.0409 bits (214), Expect = 1.599e-17
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAAREDK--KALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESG 102
            M  AL Y+A     TL  +A   R D   K L  ++  D +S RGR+  EKNAY LLR R Y +AA+ FLL +PP +   LDV+   MKD  LA +VARL+E+ 
Sbjct: 1961 MDCALYYVAMRNMKTLRAIAATDRSDSGTKFLKFIIDHDFSSERGRKAAEKNAYSLLRKRKYATAASFFLLAEPPMIKTALDVIKSQMKDITLAFMVARLMENA 2064          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|669156270|ref|XP_008613697.1| (hypothetical protein SDRG_09532 [Saprolegnia diclina VS20] >gi|530734769|gb|EQC33011.1| hypothetical protein SDRG_09532 [Saprolegnia diclina VS20])

HSP 1 Score: 83.9593 bits (206), Expect = 2.182e-16
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESG 102
            M  +LLYLA G++  L  LAK +R E  K LA  L  D +  R      +NAY LLR + Y  AAA FLLP PP+L   L + +  + DP LA+++ARLVE+ 
Sbjct: 1343 MSVSLLYLALGKKNVLGALAKVSRVESNKTLADFLVHDFSEERWSTAAVRNAYSLLRKKQYDLAAAFFLLPQPPRLQEALRICIGRLNDPSLAMIIARLVETA 1445          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|397626763|gb|EJK68230.1| (hypothetical protein THAOC_10610, partial [Thalassiosira oceanica])

HSP 1 Score: 83.5741 bits (205), Expect = 2.477e-16
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAARE--DKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVES 101
            M  AL Y+A      L  +A   R    KK L  ++  D +S RGR+  EKNAY LLR R Y  AA+ FLL +PP +   +DV+   ++DP LA +VARLVES
Sbjct:  118 MDCALYYIAMRNMKKLRAIAATDRSLSGKKFLKFIMDHDFSSDRGRKAAEKNAYSLLRKRKYAHAASFFLLAEPPMIKTAIDVITMQLQDPSLAFMVARLVES 220          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|1214706791|gb|OWZ18283.1| (hypothetical protein PHMEG_0007655 [Phytophthora megakarya])

HSP 1 Score: 83.1889 bits (204), Expect = 4.219e-16
Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVE----SGLHPDLGGDERG 113
            M   LLY+A G++  LS LAK  + E  K LA  L  D +  R      +NAY LL  + Y +AAA FLL DPP++   + VL   ++DP LAL++ARLVE      LH D    + G
Sbjct: 1175 MDVCLLYIALGKKKVLSALAKLTQSESNKTLASFLDNDFSEKRWSNAAIRNAYSLLSKKKYEAAAAFFLLCDPPRIQDTIRVLSVRLRDPSLALIIARLVEYETDDKLHHDFTTSQAG 1292          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|673047111|ref|XP_008877516.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574466931|gb|ETV93957.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 82.4185 bits (202), Expect = 6.994e-16
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPD--LGGDERGGAVRVGRCT 122
            M  +LLY+A  ++T L  LAK ++ E  K LA  L  D    R      +NAY LLR + Y  AAA FLLP PP+L   L +++  + DP LA++VARLVE    P    G D+      VG  T
Sbjct: 1399 MNVSLLYIALKKQTILGALAKVSKVESNKTLAEFLAHDFTDERWSVAAIRNAYSLLRKKQYELAAAFFLLPTPPRLQESLRIIIGRLHDPSLAMVVARLVECDQAPPTAYGLDDGSDIFHVGEQT 1523          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|673047113|ref|XP_008877517.1| (hypothetical protein H310_12291 [Aphanomyces invadans] >gi|574466930|gb|ETV93956.1| hypothetical protein H310_12291 [Aphanomyces invadans])

HSP 1 Score: 82.4185 bits (202), Expect = 7.062e-16
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPD--LGGDERGGAVRVGRCT 122
            M  +LLY+A  ++T L  LAK ++ E  K LA  L  D    R      +NAY LLR + Y  AAA FLLP PP+L   L +++  + DP LA++VARLVE    P    G D+      VG  T
Sbjct: 1399 MNVSLLYIALKKQTILGALAKVSKVESNKTLAEFLAHDFTDERWSVAAIRNAYSLLRKKQYELAAAFFLLPTPPRLQESLRIIIGRLHDPSLAMVVARLVECDQAPPTAYGLDDGSDIFHVGEQT 1523          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|813157103|ref|XP_012201900.1| (hypothetical protein SPRG_07051 [Saprolegnia parasitica CBS 223.65] >gi|641533473|gb|KDO27462.1| hypothetical protein SPRG_07051 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 82.0333 bits (201), Expect = 8.739e-16
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVES 101
            M   LLYLA G++  LS LAK +R E  K LA    +D +  R      +NAY LLR + Y  AAA FLLP PP+L   L + +  + DP LA+++ARLVES
Sbjct: 1347 MSVCLLYLALGKKNVLSALAKVSRVESNKTLA---DYDFSEERWSSAAVRNAYSLLRKKQYDLAAAFFLLPQPPRLQEALRICIGRLNDPSLAMIIARLVES 1445          
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|675207907|ref|XP_008912838.1| (hypothetical protein PPTG_23993 [Phytophthora parasitica INRA-310] >gi|568087059|gb|ETN01937.1| hypothetical protein PPTG_23993 [Phytophthora parasitica INRA-310])

HSP 1 Score: 81.6481 bits (200), Expect = 1.244e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 0
Query:    1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVE 100
            M   LLY+A G++  LS LAK  + E  K LA  L  D +  R      KNAY LL  + Y  AAA FLL +PP++   + VL   ++DP LAL++ARLVE
Sbjct:  760 MDVCLLYVALGKKKVLSALAKLTQSESNKTLASFLNNDFSEKRWSNAAVKNAYSLLSKKKYEPAAAFFLLSEPPRIQDAIRVLSMRLRDPSLALVIARLVE 860          
The following BLAST results are available for this feature:
BLAST of EWM22272.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102738|gb|EWM22272.1|5.365e-81100.00RAVE complex protein Rav1 [Nannochloropsis gaditan... [more]
gi|1173958187|gb|OQS04586.1|1.350e-1847.06hypothetical protein THRCLA_03193, partial [Thraus... [more]
gi|224012928|ref|XP_002295116.1|1.599e-1745.19predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|669156270|ref|XP_008613697.1|2.182e-1644.66hypothetical protein SDRG_09532 [Saprolegnia dicli... [more]
gi|397626763|gb|EJK68230.1|2.477e-1644.66hypothetical protein THAOC_10610, partial [Thalass... [more]
gi|1214706791|gb|OWZ18283.1|4.219e-1641.53hypothetical protein PHMEG_0007655 [Phytophthora m... [more]
gi|673047111|ref|XP_008877516.1|6.994e-1640.80hypothetical protein, variant [Aphanomyces invadan... [more]
gi|673047113|ref|XP_008877517.1|7.062e-1640.80hypothetical protein H310_12291 [Aphanomyces invad... [more]
gi|813157103|ref|XP_012201900.1|8.739e-1646.08hypothetical protein SPRG_07051 [Saprolegnia paras... [more]
gi|675207907|ref|XP_008912838.1|1.244e-1544.55hypothetical protein PPTG_23993 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8429rna8429Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications