EWM22272.1, cds8402 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|585102738|gb|EWM22272.1| (RAVE complex protein Rav1 [Nannochloropsis gaditana]) HSP 1 Score: 242.276 bits (617), Expect = 5.365e-81 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAAREDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPDLGGDERGGAVRVGRCTP 123
MQAALLYLAAGRRTTLSNLAKAAREDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPDLGGDERGGAVRVGRCTP
Sbjct: 1 MQAALLYLAAGRRTTLSNLAKAAREDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPDLGGDERGGAVRVGRCTP 123
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|1173958187|gb|OQS04586.1| (hypothetical protein THRCLA_03193, partial [Thraustotheca clavata]) HSP 1 Score: 90.1225 bits (222), Expect = 1.350e-18 Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAARED-KKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVES 101
M LLYLA G++ LS LAK ++ D K L+ L D N R + +NAY LLR + Y AAA FLLP PP+L L + + M DP LA+++ARLVES
Sbjct: 6 MSVCLLYLALGKKNILSALAKVSKLDSNKTLSDFLMHDFNDERWKVAAVRNAYSLLRKKQYDLAAAFFLLPQPPRLQEALRICIGRMNDPSLAMVIARLVES 107
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|224012928|ref|XP_002295116.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969078|gb|EED87420.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 87.0409 bits (214), Expect = 1.599e-17 Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAAREDK--KALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESG 102
M AL Y+A TL +A R D K L ++ D +S RGR+ EKNAY LLR R Y +AA+ FLL +PP + LDV+ MKD LA +VARL+E+
Sbjct: 1961 MDCALYYVAMRNMKTLRAIAATDRSDSGTKFLKFIIDHDFSSERGRKAAEKNAYSLLRKRKYATAASFFLLAEPPMIKTALDVIKSQMKDITLAFMVARLMENA 2064
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|669156270|ref|XP_008613697.1| (hypothetical protein SDRG_09532 [Saprolegnia diclina VS20] >gi|530734769|gb|EQC33011.1| hypothetical protein SDRG_09532 [Saprolegnia diclina VS20]) HSP 1 Score: 83.9593 bits (206), Expect = 2.182e-16 Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESG 102
M +LLYLA G++ L LAK +R E K LA L D + R +NAY LLR + Y AAA FLLP PP+L L + + + DP LA+++ARLVE+
Sbjct: 1343 MSVSLLYLALGKKNVLGALAKVSRVESNKTLADFLVHDFSEERWSTAAVRNAYSLLRKKQYDLAAAFFLLPQPPRLQEALRICIGRLNDPSLAMIIARLVETA 1445
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|397626763|gb|EJK68230.1| (hypothetical protein THAOC_10610, partial [Thalassiosira oceanica]) HSP 1 Score: 83.5741 bits (205), Expect = 2.477e-16 Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAARE--DKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVES 101
M AL Y+A L +A R KK L ++ D +S RGR+ EKNAY LLR R Y AA+ FLL +PP + +DV+ ++DP LA +VARLVES
Sbjct: 118 MDCALYYIAMRNMKKLRAIAATDRSLSGKKFLKFIMDHDFSSDRGRKAAEKNAYSLLRKRKYAHAASFFLLAEPPMIKTAIDVITMQLQDPSLAFMVARLVES 220
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|1214706791|gb|OWZ18283.1| (hypothetical protein PHMEG_0007655 [Phytophthora megakarya]) HSP 1 Score: 83.1889 bits (204), Expect = 4.219e-16 Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVE----SGLHPDLGGDERG 113
M LLY+A G++ LS LAK + E K LA L D + R +NAY LL + Y +AAA FLL DPP++ + VL ++DP LAL++ARLVE LH D + G
Sbjct: 1175 MDVCLLYIALGKKKVLSALAKLTQSESNKTLASFLDNDFSEKRWSNAAIRNAYSLLSKKKYEAAAAFFLLCDPPRIQDTIRVLSVRLRDPSLALIIARLVEYETDDKLHHDFTTSQAG 1292
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|673047111|ref|XP_008877516.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574466931|gb|ETV93957.1| hypothetical protein, variant [Aphanomyces invadans]) HSP 1 Score: 82.4185 bits (202), Expect = 6.994e-16 Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPD--LGGDERGGAVRVGRCT 122
M +LLY+A ++T L LAK ++ E K LA L D R +NAY LLR + Y AAA FLLP PP+L L +++ + DP LA++VARLVE P G D+ VG T
Sbjct: 1399 MNVSLLYIALKKQTILGALAKVSKVESNKTLAEFLAHDFTDERWSVAAIRNAYSLLRKKQYELAAAFFLLPTPPRLQESLRIIIGRLHDPSLAMVVARLVECDQAPPTAYGLDDGSDIFHVGEQT 1523
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|673047113|ref|XP_008877517.1| (hypothetical protein H310_12291 [Aphanomyces invadans] >gi|574466930|gb|ETV93956.1| hypothetical protein H310_12291 [Aphanomyces invadans]) HSP 1 Score: 82.4185 bits (202), Expect = 7.062e-16 Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVESGLHPD--LGGDERGGAVRVGRCT 122
M +LLY+A ++T L LAK ++ E K LA L D R +NAY LLR + Y AAA FLLP PP+L L +++ + DP LA++VARLVE P G D+ VG T
Sbjct: 1399 MNVSLLYIALKKQTILGALAKVSKVESNKTLAEFLAHDFTDERWSVAAIRNAYSLLRKKQYELAAAFFLLPTPPRLQESLRIIIGRLHDPSLAMVVARLVECDQAPPTAYGLDDGSDIFHVGEQT 1523
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|813157103|ref|XP_012201900.1| (hypothetical protein SPRG_07051 [Saprolegnia parasitica CBS 223.65] >gi|641533473|gb|KDO27462.1| hypothetical protein SPRG_07051 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 82.0333 bits (201), Expect = 8.739e-16 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVES 101
M LLYLA G++ LS LAK +R E K LA +D + R +NAY LLR + Y AAA FLLP PP+L L + + + DP LA+++ARLVES
Sbjct: 1347 MSVCLLYLALGKKNVLSALAKVSRVESNKTLA---DYDFSEERWSSAAVRNAYSLLRKKQYDLAAAFFLLPQPPRLQEALRICIGRLNDPSLAMIIARLVES 1445
BLAST of EWM22272.1 vs. NCBI_GenBank
Match: gi|675207907|ref|XP_008912838.1| (hypothetical protein PPTG_23993 [Phytophthora parasitica INRA-310] >gi|568087059|gb|ETN01937.1| hypothetical protein PPTG_23993 [Phytophthora parasitica INRA-310]) HSP 1 Score: 81.6481 bits (200), Expect = 1.244e-15 Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 0
Query: 1 MQAALLYLAAGRRTTLSNLAKAAR-EDKKALARLLQFDLNSARGRQVVEKNAYHLLRHRAYLSAAALFLLPDPPQLTLCLDVLVRHMKDPLLALLVARLVE 100
M LLY+A G++ LS LAK + E K LA L D + R KNAY LL + Y AAA FLL +PP++ + VL ++DP LAL++ARLVE
Sbjct: 760 MDVCLLYVALGKKKVLSALAKLTQSESNKTLASFLNNDFSEKRWSNAAVKNAYSLLSKKKYEPAAAFFLLSEPPRIQDAIRVLSMRLRDPSLALVIARLVE 860 The following BLAST results are available for this feature:
BLAST of EWM22272.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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