rna8428, rna8428 (mRNA) Nannochloropsis gaditana

Overview
Namerna8428
Unique Namerna8428
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1410
Alignment locationKK037248.1:658181..658805 +

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Properties
Property NameValue
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100979g1.2999.mrna
Orig protein idgnl|cribi|Naga_100979g1.2999
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:658181..658805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100979g1gene8169Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8428rna8428-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22271.1cds8401Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8428 ID=rna8428|Name=rna8428|organism=Nannochloropsis gaditana|type=mRNA|length=1410bp
CGAGGTGATTTGCCAATGCAATACAAGTCAAGCCACACGAGCAGGCACTG
ACCGGCACAACATCCATAACACAGCAGTCACGAGTCGATGACCAGAAAAA
ACACCACCACAAGCAGACAGCGGCTTCCCTGGGCACAATGCCATTTTCGG
GGCCAGGATCTGATTTGCCTGGGTGTGGGCAGCGATGCCCTCCTTCTCGA
CAGCGCGTCACGCTTGGAACTGCAACGTTTATCCAGTGAAGGGGGCAGAA
AAAAGCAGCATTTACACGACCAATCGGACGTGTCAAGTGCGCAGCATGGG
GAAGATGAAAGCCCAAGTGCAATGGCCAGAAATGGCTCGATTTCCGGGGA
GGACCCGCAGGGCATCGACTTGGTCGTGGGGGTCGCGTGGGGCCCGTCCC
GGGGTGTGCTGGCCGTGCTGTGGGACAATGGCACCTTGGCGATTGCGGAG
AACCCGACGATCACAGGCGCGTGGTCGGTGGTGAGCTGGTTCCACATCCG
TAACCCGGAGGAGGAGGAAGGAAGGGAGGAGGCGTCGGAGACGGCGCCCA
GGCACCGAGGGGGCGCTTTCATCCCGCCCGAAGCCAATGTCACGGTGCGG
TGGTCCAATCACGCGTTGCTGGTGGCGTGGGGCCGCTCCCTCCAGGTCTT
TGCCTTCTACGACTGGCACGAACGGGCGAAGAAGCTCCAGGCTGGGCAGA
ATGGTGGGGGGGGCGAGGGGGGGGACGGGGAGCCCTCAGGCGGCTCTTGC
ATTACCGGTTACCCTGTCCCCATTTACGGGCAGACATATGCCCTAACGGC
ACTTTCATCGCCGTCTCCTACCTGGACGAGGAGCTGACGGACGTCCATGT
CTGGTCCGTCCTCTCCCCGTCCTCCCTCCCGCCCTCCCTCCCGCCCTCCT
CGGTCTCCCCCGAGGACCCTCCTTCCACGACGGAGTCCTCCTCCCTCTCC
TCTTCGCCTCCTCCTCTTCCGAAGGGAGCAGACGCTCCTTCCCCTCCCCG
GGCCACTCGTGCCCTCACTCTCGCCTCTACTGGCGGCGTCATCCAAGACC
CTCCCCCTTCCCCCATAGCCAGCCTGACGCACCAGGCCCCGGCCCATGTC
GTGGAGTGGCGGGCGGGGCTGCCGGGTACACTCTCCCTTCTTTTGACCTG
CTGTGGCACCGACAACCACCTCCACGTGTGGGCCGAGGCGCGTGCCCTCG
CCCCTCCGTCCCTCCCTCCCTCCTTCTTCACCTCTTCCTCCATGCCACCG
TCCCCCACCGCCGGCCCGCGCAGCCCTCCCTCCCGCGCGTCCTCCCGCCC
ACCCTCCCTCCCTCCCACCACCTTCCACCTCTGGCTTTCCATCGGTCCTT
TTCTGCCTCTGGGCTCGGCGGTCTCTTGGTTGCGATGGGCAAGCTATGGG
AGCACGCGGG
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protein sequence of rna8428

>rna8428-protein ID=rna8428-protein|Name=rna8428|organism=Nannochloropsis gaditana|type=polypeptide|length=179bp
MRLEKREPYIRVASFKRHPQTGELLPAEASKGENEERIQVGDALVAVNGY
SLVGMSLEQAVGVMRSVGGAIGGGGEGGTGGGAGGGVVTLGFKRAGHLGE
EAAEKVTRRVSRVPSILDFSGASKHHRQQQQQQQQQQQQEEEEAEQLILG
RLKTIGPAFSGSGACKGKAPFPPLFPPSM
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mRNA from alignment at KK037248.1:658181..658805+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8428 ID=rna8428|Name=rna8428|organism=Nannochloropsis gaditana|type=mRNA|length=625bp|location=Sequence derived from alignment at KK037248.1:658181..658805+ (Nannochloropsis gaditana)
ATGCGCCTGGAGAAGCGGGAGCcgtacatccgggtcgcctccTTCAAGCG
ACACCCGCAGACAGGAGAGCTTCTCCCCGCCGAGGCcagcaagggggaaa
atgaGGAACGCATACAAGTCGGGGACGCGTTGGTGGCAGTGAACGGGTAT
TCGCTGGTGGGAATGAGCTTGgagcaggcggtgggggTGATGCGCTCGGT
TGGCGGTGCCattgggggaggcggggagggagggaccgggggaggggctg
ggggaggggtggtcaCATTGGGGTTCAAACGCGCTGGCCACTTGGGCGAA
GAGGCAGCAGAAAAGGTGACACGGCGGGTCTCGAGGGTCCCTTCCATCTT
GGACTTCAGCGGTGCAAGCAAACACCACcgacaacagcagcagcagcagc
aacagcagcagcagcaggaagaagaggaggcggaacAGGTCTTGCTCTAT
CAAAGGCACCAGGGCGCCCCGTTCGAACGAACCTACCGCCaggcttccct
tccctccctttcccctgcgGCAGCTGATTCTGGGCCGCTTAAAGACCATA
GGACCGGCTTTCTCTGGCAGTGGAGCTTGCAAGGGCAaggctcccttccc
cccgctcttccccccttcgatGTAG
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Coding sequence (CDS) from alignment at KK037248.1:658181..658805+

>rna8428 ID=rna8428|Name=rna8428|organism=Nannochloropsis gaditana|type=CDS|length=1080bp|location=Sequence derived from alignment at KK037248.1:658181..658805+ (Nannochloropsis gaditana)
ATGCGCCTGGAGAAGCGGGAGCcgtacatccgggtcgcctccTTCAAGCG
ACACCCGCAGACAGGAGAGCTTCTCCCCGCCGAGGCcagcaagggggaaa
atgaGGAACGCATACAAGTCGGGGACGCGTTGGTGGCAGTGAACGGGTAT
TCGCTGGTGGGAATGAGCTTGgagcaggcggtgggggTGATGCGCTCGGT
TGGCGGTGCCattgggggaggcggggagggagggaccgggggaggggctg
ggggaggggtggtcaCATTGGGGTTCAAACGCGCTGGCCACTTGGGCGAA
GAGGCAGCAGAAAAGGTGACACGGCGGGTCTCGAGGGTCCCTTCCATCTT
GGACTTCAGCGGTGCAAGCAAACACCACcgacaacagcagcagcagcagc
aacagcagcagcagcaggaagaagaggaggcggaacAGCTGATTCTGGGC
CGCTTAAAGACCATAGGACCGGCTTTCTCTGGCAGTGGAGCTTGCAAGGG
CAaggctcccttccccccgctcttccccccttcgatGTAGATGCGCCTGG
AGAAGCGGGAGCcgtacatccgggtcgcctccTTCAAGCGACACCCGCAG
ACAGGAGAGCTTCTCCCCGCCGAGGCcagcaagggggaaaatgaGGAACG
CATACAAGTCGGGGACGCGTTGGTGGCAGTGAACGGGTATTCGCTGGTGG
GAATGAGCTTGgagcaggcggtgggggTGATGCGCTCGGTTGGCGGTGCC
attgggggaggcggggagggagggaccgggggaggggctgggggaggggt
ggtcaCATTGGGGTTCAAACGCGCTGGCCACTTGGGCGAAGAGGCAGCAG
AAAAGGTGACACGGCGGGTCTCGAGGGTCCCTTCCATCTTGGACTTCAGC
GGTGCAAGCAAACACCACcgacaacagcagcagcagcagcaacagcagca
gcagcaggaagaagaggaggcggaacAGCTGATTCTGGGCCGCTTAAAGA
CCATAGGACCGGCTTTCTCTGGCAGTGGAGCTTGCAAGGGCAaggctccc
ttccccccgctcttccccccttcgatGTAG
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Synonyms
Publications