EWM22271.1, cds8401 (CDS) Nannochloropsis gaditana

Overview
NameEWM22271.1
Unique Namecds8401
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:658181..658618 +
Alignment locationKK037248.1:658704..658805 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22271.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100979g1.2999.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:658181..658618 +
KK037248.1supercontigKK037248.1:658704..658805 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Homology
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BLAST of EWM22271.1 vs. NCBI_GenBank
Match: gi|585102737|gb|EWM22271.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 353.214 bits (905), Expect = 4.143e-123
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 
Query:    1 MRLEKREPYIRVASFKRHPQTGELLPAEASKGENEERIQVGDALVAVNGYSLVGMSLEQAVGVMRSVGGAIGGGGEGGTGGGAGGGVVTLGFKRAGHLGEEAAEKVTRRVSRVPSILDFSGASKHHRQQQQQQQQQQQQEEEEAEQLILGRLKTIGPAFSGSGACKGKAPFPPLFPPSM 179
            MRLEKREPYIRVASFKRHPQTGELLPAEASKGENEERIQVGDALVAVNGYSLVGMSLEQAVGVMRSVGGAIGGGGEGGTGGGAGGGVVTLGFKRAGHLGEEAAEKVTRRVSRVPSILDFSGASKHHRQQQQQQQQQQQQEEEEAEQLILGRLKTIGPAFSGSGACKGKAPFPPLFPPSM
Sbjct:    1 MRLEKREPYIRVASFKRHPQTGELLPAEASKGENEERIQVGDALVAVNGYSLVGMSLEQAVGVMRSVGGAIGGGGEGGTGGGAGGGVVTLGFKRAGHLGEEAAEKVTRRVSRVPSILDFSGASKHHRQQQQQQQQQQQQEEEEAEQLILGRLKTIGPAFSGSGACKGKAPFPPLFPPSM 179
The following BLAST results are available for this feature:
BLAST of EWM22271.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102737|gb|EWM22271.1|4.143e-123100.00conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8428rna8428Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications