rna8425, rna8425 (mRNA) Nannochloropsis gaditana

Overview
Namerna8425
Unique Namerna8425
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length953
Alignment locationKK037248.1:651880..652802 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100827g1.5231.mrna
Orig protein idgnl|cribi|Naga_100827g1.5231
GbkeymRNA
End range.
End range652802
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:651880..652802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100827g1gene8166Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8425rna8425-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22275.1cds8398Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8425 ID=rna8425|Name=rna8425|organism=Nannochloropsis gaditana|type=mRNA|length=953bp
CGTGTTCCGGCGAAGGTCGCAAATTTGTTCTTTTTATGTCCTATTTATCA
ATAATGTGGTCCCCTGAAGTTGCGTGCTTTATGGGGCACATTGAAAAGAA
TTTAATGGATATCTTCCTTCTATTGATGAGACACACTACTCATACACGGC
GAATTACGACTTACAATTGTGCGCATTGCTGCTTACGGGTCATCTTCTCA
TCTTCTGCTTTCCTCGCCTTGCACGTTGTAGCACTGATCTCCCCAGCATG
TTTGCTTTGCGACGCACTCTCGTCGGAACATCACCTCTTTCAAGGTTTCA
TCAAGGTCATCGACGTGCCTTCACATCACCTTCCGGCGGCACGAACCCTT
GGCTGAACGATAAAAGTCTGTATCCGCTCTTGGGCATAGTTGGCTTGACC
GTCCTAGTTGGAGTTTGGTATGGTCCCTATTATCATTACAAATCACCTGA
GAAGCAGGCCCCGATGCGTCGTCGTACTTCAGTCCTGACCCAAAAGGAAC
CGCATGAAGCCGGCAAACCTTTCGGCGAGGAACTTTATAAGAAATCAGAG
GACTTAACGAAGGGTATTTACGGAGTGACGGTTAAAGACACGGAAACCGT
AAAGGATGAGGAAAAGGGAAAGCTTTAAGGGACAATTATAAACTGGGACG
ACTCCATCTTTCACCTACCGAACAAAAGGCTGTGAGCATTACAGGTATAT
GACGAGATCAATACGAGACTTAGAAGCCAATGTAGTAAAATGAACAAAGC
GCGATGAAATGAGGACAAATGGGATTTAGGCATACGAGTGAATTGGAGGA
GGAGTGATAACTCCAGTCCTATTGCTGGCGCTTGGGCTCTGTTTTCAGTG
GACCTTTTTGCCTTCGAAAAGAAATGTGCTTGATTTTGATTAGATCCACT
TTTGACAGGCCAACACAAAGGCTTTAATGATATCTTGCTCTAGTGAAGCG
TTT
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protein sequence of rna8425

>rna8425-protein ID=rna8425-protein|Name=rna8425|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MARDLHHVEGPIWISSPDDGMPTGRKGKARWMEGTATLRRAMELHTKHPM
LEWKASGKKTENEDPGPTHKSEISLKLVIGKVHNEIHVAQEEGTRTLGWW
PRRASSLAASSPTRPRTYFAVEAYEAQTLKSALRYNLALSPPKTFLLGFA
SENEARAWQEASSTANNTWSRG
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mRNA from alignment at KK037248.1:651880..652802+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8425 ID=rna8425|Name=rna8425|organism=Nannochloropsis gaditana|type=mRNA|length=923bp|location=Sequence derived from alignment at KK037248.1:651880..652802+ (Nannochloropsis gaditana)
CGAGACTTGTGAGGCCCATGAGTCCACCAGAGTGCAGCCACGGTACAAAA
TGCATGACGAGTGATAACCTCTAAAAAGTGCCAAAATCGGCGCGTTTGGA
CTGGTTGCCGTCTATTCGTTTCTGCGTGCGCCTAGGGTAAGGTTGGAAAA
GACTTTCAATATTAGAGTCTGCCCGACTCGGAGGTGCCTGATCACGGAAA
ACAAGTATACTTGTGCTTTTACGACTTCCCTCGCGAACATACTACTAAGC
ATAAATTTGTCTCTCCATTTGCAATAGAGAAGTCTCGCCTCTCATGATCA
CGGTCTTAATAATACATGAAACAGACAGAAAAAAGTGATGCAAACATCCC
TTAGAAGTACATGACTTTTCAATATACGATAGCTCCTTTGACTATACCTA
GCACAGATGGCTAGAGATTTACATCATGTTGAAGGTCCTATATGGATCTC
TTCGCCTGATGATGGGATGCCTACAGGTCGTAAAGGAAAGGCTcggtgga
tggaggggactGCTACGCTCCGTCGTGCTATGGAGCTACATACAAAGCAT
CCCATGCTGGAGTGGAAAGCGAGCGGGAAAAAGACAGAGAATGAGGATCC
AGGGCCAACCCACAAAAGTGAAATCTCTCTCAAGCTCGTTATTGGCAAAG
TGCACAACGAGATCCACGTCgctcaagaggagggaacaagGACACTTGGA
TGGTGGCCACGGAgggcttcctctctcgccgcttcttctcccactcGTCC
TCGGACATATTTCGCGGTCGAGGCTTATGAGGCCCAAACCTTGAAATCCG
CACTCCGGTACAACCTGGCACTGTCTCCACCGAAAACTTTTTTGCTGGGA
TTTGCCTCAGAAAACGAGGCGAGGGCATGGCAGGAAGCAAGCAGTACTGC
GAACAACACATGGAGCAGAGGAC
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Coding sequence (CDS) from alignment at KK037248.1:651880..652802+

>rna8425 ID=rna8425|Name=rna8425|organism=Nannochloropsis gaditana|type=CDS|length=517bp|location=Sequence derived from alignment at KK037248.1:651880..652802+ (Nannochloropsis gaditana)
ATGGCTAGAGATTTACATCATGTTGAAGGTCCTATATGGATCTCTTCGCC
TGATGATGGGATGCCTACAGGTCGTAAAGGAAAGGCTcggtggatggagg
ggactGCTACGCTCCGTCGTGCTATGGAGCTACATACAAAGCATCCCATG
CTGGAGTGGAAAGCGAGCGGGAAAAAGACAGAGAATGAGGATCCAGGGCC
AACCCACAAAAGTGAAATCTCTCTCAAGCTCGTTATTGGCAAAGTGCACA
ACGAGATCCACGTCgctcaagaggagggaacaagGACACTTGGATGGTGG
CCACGGAgggcttcctctctcgccgcttcttctcccactcGTCCTCGGAC
ATATTTCGCGGTCGAGGCTTATGAGGCCCAAACCTTGAAATCCGCACTCC
GGTACAACCTGGCACTGTCTCCACCGAAAACTTTTTTGCTGGGATTTGCC
TCAGAAAACGAGGCGAGGGCATGGCAGGAAGCAAGCAGTACTGCGAACAA
CACATGGAGCAGAGGAC
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Synonyms
Publications