EWM22275.1, cds8398 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22275.1
Unique Name	cds8398
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037248.1:652286..652802 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22275.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100827g1.5231.mrna
Gbkey	CDS
End range	.
End range	652802

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:652286..652802 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM22275.1 vs. NCBI_GenBank
Match: gi|585102744|gb|EWM22275.1| (hypothetical protein Naga_100827g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 352.058 bits (902), Expect = 7.282e-123
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0

Query:    1 MARDLHHVEGPIWISSPDDGMPTGRKGKARWMEGTATLRRAMELHTKHPMLEWKASGKKTENEDPGPTHKSEISLKLVIGKVHNEIHVAQEEGTRTLGWWPRRASSLAASSPTRPRTYFAVEAYEAQTLKSALRYNLALSPPKTFLLGFASENEARAWQEASSTANNTWSRG 172
            MARDLHHVEGPIWISSPDDGMPTGRKGKARWMEGTATLRRAMELHTKHPMLEWKASGKKTENEDPGPTHKSEISLKLVIGKVHNEIHVAQEEGTRTLGWWPRRASSLAASSPTRPRTYFAVEAYEAQTLKSALRYNLALSPPKTFLLGFASENEARAWQEASSTANNTWSRG
Sbjct:    1 MARDLHHVEGPIWISSPDDGMPTGRKGKARWMEGTATLRRAMELHTKHPMLEWKASGKKTENEDPGPTHKSEISLKLVIGKVHNEIHVAQEEGTRTLGWWPRRASSLAASSPTRPRTYFAVEAYEAQTLKSALRYNLALSPPKTFLLGFASENEARAWQEASSTANNTWSRG 172

The following BLAST results are available for this feature:

BLAST of EWM22275.1 vs. NCBI_GenBank

BLAST of EWM22275.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102744\|gb\|EWM22275.1\|	7.282e-123	100.00	hypothetical protein Naga_100827g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8425	rna8425	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications