rna8424, rna8424 (mRNA) Nannochloropsis gaditana

Overview
Namerna8424
Unique Namerna8424
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length228
Alignment locationKK037248.1:650230..651470 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100827g2.5233.mrna
Orig protein idgnl|cribi|Naga_100827g2.5233
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:650230..651470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100827g2gene8165Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8424rna8424-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22277.1cds8397Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8424 ID=rna8424|Name=rna8424|organism=Nannochloropsis gaditana|type=mRNA|length=228bp
ATGCAAGTTGCTTGTGATGACATTCCTTCTGTTGCTTCAACATCAAGAGC
TCGCTCTTCAAGAGTTTTCACGGGAGCGCACAGCAATTCTTGTCGCCTTC
ATGACTCATTTATGGCATGCAGCGGTGCAACTCTGGCGGTAAAGGATCTT
CCTAGAATGTATCTGGCGGGGGGAGGAAGGAATGTGCCACCAATCATGCT
GACGAACATGACCTCTTACATGAATTAA
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protein sequence of rna8424

>rna8424-protein ID=rna8424-protein|Name=rna8424|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MFALRRTLVGTSPLSRFHQGHRRAFTSPSGGTNPWLNDKSLYPLLGIVGL
TVLVGVWYGPYYHYKSPEKQAPMRRRTSVLTQKEPHEAGKPFGEELYKKS
EDLTKGIYGVTVKDTETVKDEEKGKL
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mRNA from alignment at KK037248.1:650230..651470+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8424 ID=rna8424|Name=rna8424|organism=Nannochloropsis gaditana|type=mRNA|length=1241bp|location=Sequence derived from alignment at KK037248.1:650230..651470+ (Nannochloropsis gaditana)
CGTGTTCCGGCGAAGGTCGCAAATTTGTTCTTTTTATGTCCTATTTATCA
ATAATGTGGTCCCCTGAAGTTGCGTGCTTTATGGGGCACATTGAAAAGAA
TTTAATGGATATCTTCCTTCTATTGATGAGACACACTACTCATACACGGC
GAATTACGACTTACAATTGTGCGCATTGCTGCTTACGGGTCATCTTCTCA
TCTTCTGCTTTCCTCGCCTTGCACGTTGTAGCACTGATCTCCCCAGCATG
TTTGCTTTGCGACGCACTCTCGTCGGAACATCACCTCTTTCAAGGTTTCA
TCAAGGTCATCGACGTGCCTTCACATCACCTTCCGGCGGCACGAACCCTT
GGCTGAACGATAAAAGTGTACGTAGACGTGCGTGTAGGAGGTGAGACGCT
CGCCAAGGGGTCATACATCTTTTTGCATCCGATCCTCCTTACTTCCTTCC
TACAGCTGTATCCGCTCTTGGGCATAGTTGGCTTGACCGTCCTAGTTGGA
GTTTGGTATGGTCCCTATTATCATTACAAATCACCTGAGAAGCAGTAAGT
ATCGACTTAAGcatccttcctcgccacccaaATTGGAAAATAGACCTAAT
TGTGCTTCTGCGTGTTCCTGTATCGACAAACACTTGTATGATATCCTTAT
TATCCTATGCATTGCGTCATAAATTCGATGTGTTTCAGTATTGATTACAA
TGAAGACTTTATCTCATTTGGAACGCATCACGCGGTACATACAGGGCCCC
GATGCGTCGTCGTACTTCAGTCCTGACCCAAAAGGAACCGCATGAAGCCG
GCAAACCTTTCGGCGAGGAACTTTATAAGAAATCAGAGGACTTAACGAAG
GGTATTTACGGAGTGACGGTTAAAGACACGGAAACCGTAAAggatgagga
aaagggaaagctTTAAGGGACAATTATAAACTGGGACGACTCCATCTTTC
ACCTACCGAACAAAAGGCTGTGAGCATTACAGGTATATGACGAGATCAAT
ACGAGACTTAGAAGCCAATGTAGTAAAATGAACAAAGCGCGATGAAATGA
GGACAAATGGGATTTAGGCATACGAGtgaattggaggaggagtgatAACT
CCAGTCCTATTGCTGGCGCTTGGGCTCTGTTTTCAGTGGACCTTTTTGCC
TTCGAAAAGAAATGTGCTTGATTTTGATTAGATCCACTTTTGACAGGCCA
ACACAAAGGCTTTAATGATATCTTGCTCTAGTGAAGCGTTT
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Coding sequence (CDS) from alignment at KK037248.1:650230..651470+

>rna8424 ID=rna8424|Name=rna8424|organism=Nannochloropsis gaditana|type=CDS|length=1143bp|location=Sequence derived from alignment at KK037248.1:650230..651470+ (Nannochloropsis gaditana)
ATGTTTGCTTTGCGACGCACTCTCGTCGGAACATCACCTCTTTCAAGGTT
TCATCAAGGTCATCGACGTGCCTTCACATCACCTTCCGGCGGCACGAACC
CTTGGCTGAACGATAAAAGTCTGTATCCGCTCTTGGGCATAGTTGGCTTG
ACCGTCCTAGTTGGAGTTTGGTATGGTCCCTATTATCATTACAAATCACC
TGAGAAGCAGGCCCCGATGCGTCGTCGTACTTCAGTCCTGACCCAAAAGG
AACCGCATGAAGCCGGCAAACCTTTCGGCGAGGAACTTTATAAGAAATCA
GAGGACTTAACGAAGGGTATTTACGGAGTGACGGTTAAAGACACGGAAAC
CGTAAAggatgaggaaaagggaaagctTTAAATGTTTGCTTTGCGACGCA
CTCTCGTCGGAACATCACCTCTTTCAAGGTTTCATCAAGGTCATCGACGT
GCCTTCACATCACCTTCCGGCGGCACGAACCCTTGGCTGAACGATAAAAG
TCTGTATCCGCTCTTGGGCATAGTTGGCTTGACCGTCCTAGTTGGAGTTT
GGTATGGTCCCTATTATCATTACAAATCACCTGAGAAGCAGGCCCCGATG
CGTCGTCGTACTTCAGTCCTGACCCAAAAGGAACCGCATGAAGCCGGCAA
ACCTTTCGGCGAGGAACTTTATAAGAAATCAGAGGACTTAACGAAGGGTA
TTTACGGAGTGACGGTTAAAGACACGGAAACCGTAAAggatgaggaaaag
ggaaagctTTAAATGTTTGCTTTGCGACGCACTCTCGTCGGAACATCACC
TCTTTCAAGGTTTCATCAAGGTCATCGACGTGCCTTCACATCACCTTCCG
GCGGCACGAACCCTTGGCTGAACGATAAAAGTCTGTATCCGCTCTTGGGC
ATAGTTGGCTTGACCGTCCTAGTTGGAGTTTGGTATGGTCCCTATTATCA
TTACAAATCACCTGAGAAGCAGGCCCCGATGCGTCGTCGTACTTCAGTCC
TGACCCAAAAGGAACCGCATGAAGCCGGCAAACCTTTCGGCGAGGAACTT
TATAAGAAATCAGAGGACTTAACGAAGGGTATTTACGGAGTGACGGTTAA
AGACACGGAAACCGTAAAggatgaggaaaagggaaagctTTAA
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Synonyms
Publications