EWM22277.1, cds8397 (CDS) Nannochloropsis gaditana

Overview
NameEWM22277.1
Unique Namecds8397
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:650477..650596 +
Alignment locationKK037248.1:650685..650773 +
Alignment locationKK037248.1:650974..651145 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22277.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100827g2.5233.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:650477..650596 +
KK037248.1supercontigKK037248.1:650685..650773 +
KK037248.1supercontigKK037248.1:650974..651145 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM22277.1 vs. NCBI_GenBank
Match: gi|553190153|ref|XP_005855137.1| (hypothetical protein NGA_0090400 [Nannochloropsis gaditana CCMP526] >gi|422293919|gb|EKU21219.1| hypothetical protein NGA_0090400 [Nannochloropsis gaditana CCMP526] >gi|585102746|gb|EWM22277.1| hypothetical protein Naga_100827g2 [Nannochloropsis gaditana])

HSP 1 Score: 258.455 bits (659), Expect = 2.570e-87
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 
Query:    1 MFALRRTLVGTSPLSRFHQGHRRAFTSPSGGTNPWLNDKSLYPLLGIVGLTVLVGVWYGPYYHYKSPEKQAPMRRRTSVLTQKEPHEAGKPFGEELYKKSEDLTKGIYGVTVKDTETVKDEEKGKL 126
            MFALRRTLVGTSPLSRFHQGHRRAFTSPSGGTNPWLNDKSLYPLLGIVGLTVLVGVWYGPYYHYKSPEKQAPMRRRTSVLTQKEPHEAGKPFGEELYKKSEDLTKGIYGVTVKDTETVKDEEKGKL
Sbjct:    1 MFALRRTLVGTSPLSRFHQGHRRAFTSPSGGTNPWLNDKSLYPLLGIVGLTVLVGVWYGPYYHYKSPEKQAPMRRRTSVLTQKEPHEAGKPFGEELYKKSEDLTKGIYGVTVKDTETVKDEEKGKL 126
The following BLAST results are available for this feature:
BLAST of EWM22277.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553190153|ref|XP_005855137.1|2.570e-87100.00hypothetical protein NGA_0090400 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8424rna8424Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications