rna8423, rna8423 (mRNA) Nannochloropsis gaditana

Overview
Namerna8423
Unique Namerna8423
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length448
Alignment locationKK037248.1:649853..650128 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100827g3.5232.mrna
Orig protein idgnl|cribi|Naga_100827g3.5232
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:649853..650128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100827g3gene8164Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8423rna8423-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22276.1cds8396Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8423 ID=rna8423|Name=rna8423|organism=Nannochloropsis gaditana|type=mRNA|length=448bp
TACAGGATACCTGGGGTCGTGTGGACATCGTCATCAACAATGCCGGCATT
CTGCGCGACCGTTCCTTCCTGAAAATGACGGATCAAGACTGGGATCTCGT
GTACAAAGTCCATCTTCTCGGCACCTACAGGGTTTCCAAAGCCGCCTGGC
CCATCATGCGGCAGCAGAAGTACGGTCGTATCGTGAACGTATCCTCGGCC
TCGGGTCTCTATGGCAATGAAGGGCAAGGAAACTACGCGGCGATGAAGAT
GGGCATTGCCGGCCTCAGCGCCACATTGGCCAAGGAAGGAGTGCGATACG
ATGTGAAGGTACTCTTCCTCCCTCTCGCCCTCCCCCTCCTCCCTGTCTTC
CCCTACGACGCCCTCCCGTCGCTTGGCGTTGCTTTCTTCCTGTCCTCTTT
GTCTTCTCCCCCATTACCCTCTTTTTGAAAGGGATCCCTGCTCCTACC
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protein sequence of rna8423

>rna8423-protein ID=rna8423-protein|Name=rna8423|organism=Nannochloropsis gaditana|type=polypeptide|length=75bp
MQVACDDIPSVASTSRARSSRVFTGAHSNSCRLHDSFMACSGATLAVKDL
PRMYLAGGGRNVPPIMLTNMTSYMN
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mRNA from alignment at KK037248.1:649853..650128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8423 ID=rna8423|Name=rna8423|organism=Nannochloropsis gaditana|type=mRNA|length=276bp|location=Sequence derived from alignment at KK037248.1:649853..650128- (Nannochloropsis gaditana)
ATGCAAGGTATAATTTTTCCTGTAACGAACACGTGGCGTTTCCTACAATT
TTAAGTTGCTTGTGATGACATTCCTTCTGTTGCTTCAACATCAAGAGCTC
GCTCTTCAAGAGTTTTCACGGGAGCGCACAGCAATTCTTGTCGCCTTCAT
GACTCATTTATGGCATGCAGCGGTGCAACTCTGGCGGTAAAGGATCTTCC
TAGAATGTATCTGGCGGGGGGAGGAAGGAATGTGCCACCAATCATGCTGA
CGAACATGACCTCTTACATGAATTAA
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Coding sequence (CDS) from alignment at KK037248.1:649853..650128-

>rna8423 ID=rna8423|Name=rna8423|organism=Nannochloropsis gaditana|type=CDS|length=456bp|location=Sequence derived from alignment at KK037248.1:649853..650128- (Nannochloropsis gaditana)
TTGCTTGTGATGACATTCCTTCTGTTGCTTCAACATCAAGAGCTCGCTCT
TCAAGAGTTTTCACGGGAGCGCACAGCAATTCTTGTCGCCTTCATGACTC
ATTTATGGCATGCAGCGGTGCAACTCTGGCGGTAAAGGATCTTCCTAGAA
TGTATCTGGCGGGGGGAGGAAGGAATGTGCCACCAATCATGCTGACGAAC
ATGACCTCTTACATGAATTAAATGCAAGTTGCTTGTGATGACATTCCTTC
TGTTGCTTCAACATCAAGAGCTCGCTCTTCAAGAGTTTTCACGGGAGCGC
ACAGCAATTCTTGTCGCCTTCATGACTCATTTATGGCATGCAGCGGTGCA
ACTCTGGCGGTAAAGGATCTTCCTAGAATGTATCTGGCGGGGGGAGGAAG
GAATGTGCCACCAATCATGCTGACGAACATGACCTCTTACATGAATTAAA
TGCAAG
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Synonyms
Publications