rna8421, rna8421 (mRNA) Nannochloropsis gaditana

Overview
Namerna8421
Unique Namerna8421
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length708
Alignment locationKK037248.1:644368..645997 -

Link to JBrowse

Properties
Property NameValue
Productsterol carrier protein 2
Orig transcript idgnl|cribi|Naga_100569g6.10380.mrna
Orig protein idgnl|cribi|Naga_100569g6.10380
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:644368..645997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100569g6gene8162Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8421rna8421-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22282.1cds8394Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8421 ID=rna8421|Name=rna8421|organism=Nannochloropsis gaditana|type=mRNA|length=708bp
ACGGCCTGGGCTCTTACTTCATGAGCTTGCAGAGATTTACTTTTACAGGG
GTGCGAGTGAGTCCTCCCGCAAAAGCAGGTGATATAGATAAATGACGTGG
GCTCGATATTTTTACCCATGTTAAATCCCTTTTTACACCCTTATAAGTCA
CAGAAGCCACGTCTTCAATCGAATAACATCCATATATCGTAGTGCTGCTC
CCCAAGAGCTTCAAAGGATTTGATTGACTGAAGGGATGGGCAACAAGCTG
GATACCCCCCACCATGCCTCCTCGACTTCCCCATCCTCTCCACAAGCCTC
TGCTAAGAATTTCACTGGCTCTTTTCGCCCTGGCTTTTCGCCTCGGTCCT
CGCCGGCTCCCTCCCCAACGAACGACACTAAAGGCGGCGACTCTTCGAGG
ACGCCGAAGAAGCCCATGGCCCTTTCTCCCACTACGATGTCTATAGCATC
GGGTGCAGGCAGGACAGGAGCTGCAGCCACAGTCGTCAGTCCCGCAGTGT
TGTTGCGCTCACTGGACTCTGAGGGAGAGAGCCCCCGAGGGGAAGGAGAA
GGAGTTGACTGCGAGGTCACCGATATCCTGCGTCGGTACTCGCACGTGGG
AGGCCGAGCTGTGTCAATAAAGGATTTCGACCTCCTAAAAGTACGTACTT
AAGACCTTGGACGGAAGATGTGCCGAATAACTTAGGCTCGAACTTGCCTC
CTGAACGC
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protein sequence of rna8421

>rna8421-protein ID=rna8421-protein|Name=rna8421|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MEKALKNEGAALAKKINGNYRFVVDDGNWVLDLKGASPSLRIGDKDSPVD
VTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLART
KAKL
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mRNA from alignment at KK037248.1:644368..645997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8421 ID=rna8421|Name=rna8421|organism=Nannochloropsis gaditana|type=mRNA|length=1630bp|location=Sequence derived from alignment at KK037248.1:644368..645997- (Nannochloropsis gaditana)
CTGGAGACAGTGGCAAGGAGTCGGTCGGCGTGCCTTGCGGACCATAGGAC
TGATATGAGGATCTTGCCTCCCCGCTTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCAGACCTCTTACCCCACCAGCAATAAC
GACGCTTTCGGTGAGATCATGTCCAACTTGGAGGGCCAAGAGGCCCCTCC
CCGCCCCCGTCTACTGCCTCCACCCCGGGCGCTGCCTCGAAGGAGAGCCT
TCTGGCAAGTGCGCCGCTTTTTGGGACCATGGAGAAGGTACGCCTCTGCC
CTGCCTGTTTCTCTCTATCTCCCTTTTTCCATCCCTCCCTCCTCTCCTTC
TCCTCATGCCGCTTCGATCCCAGGGAAGGCATCTCTCACACGTCATTTTC
CTCCATTCTTTTCCCGGTTTTCCTCCTTTTCTCCTCCTTCCCAGGCGCTA
AAAAATGAAGGCGCGGCCCTGGCCAAGAAGATCAATGGGAACTATCGCTT
TGTGGTCGACGACGGGAATTGGGTGCTGGATCTGAAGGTAATTGCCCGTC
TGATCCCTTTGGCCGCCTTCGTTGTTTTTCGCGCAAGGGCTCAGCGTTTA
GAGGGAGCTTGGTACTCAAACCTGGTGGAGCTAGCTGTCTTGTCATCCTT
AACTTATTTGGTGTGCGGCGCATCTTTGGACACATTTTCTCCGCATCCCC
CCCCCCCTACATCTTCTCTCTTCGTCCGTCTGCTCTAGCACATTTAATGT
CTCTACTTTGCTCTCGTAATTCATGGCGCTACTCCTTCTGTTGCTAAATT
TCGCTCTCTCCTTTCCGGCCTTTACCTCTTTTTGTTAGGGCGCGTCTCCA
TCCCTGCGTATCGGAGACAAAGATAGTCCCGTAGACGTGACGTTGCGTGT
AAGCGACGCTGATTTTGTGCAAATCGTAACAGGGAAACTCAACAGCCAGC
AGGTAGGACGCAAACTTGCGAAAATGGTTTTTATGCTTTTTTCTTAGAAC
TTTTGCTATTCTGATTCATTCCCCCCCTTTAATGGCGGTATATTTATCTG
GGGTCTTGATATTTCTCCTCAATCTTCATTTTCTTCTGTGTCTCCCCGTT
TTAAAAAAAAATCACATCAGGCCTTCATGAAAGGAAAATTAAAGATCAAG
GGAAACATGGGTATGGCTATGAAGTTAGAGAGCATCCTCAAGCTAGCTCG
TACGAAAGCTAAACTTTGATAGGGTTATTAAGAAGAAATGAGAGATGCAT
GTCATATATATGTAACTGGATCGACACAAAGGGGGCATGGTGTGCTGTAA
GATCGCCGTGCGGGCAGGCGCCATGCCCAAAGGGGGTTCTTCAAGAGGAA
CACAGAGGGAATAAACAAAGGCAAAGTATTGAGAAATGTCGGGGATTAAT
TTGTTGGGAGGACAAAAGTAAAGACGCTATTATCAATTAATGAGTCGTGG
CCGATCAAACGCGCACAATGCACATGCATGTGCACGTTCCCTCCCATCTG
TGGATTTCACAACGGAAATTTGAATTTTCTGAAAACCGTTAATTGTTCGA
AAAGCCCGCATGACTGCCATGTGTGTGCCTCGTCAAGCGCCTAAAAGTGG
TGCGCATAATAATATTATGGTGAATCTATC
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Coding sequence (CDS) from alignment at KK037248.1:644368..645997-

>rna8421 ID=rna8421|Name=rna8421|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at KK037248.1:644368..645997- (Nannochloropsis gaditana)
GCCTTCATGAAAGGAAAATTAAAGATCAAGGGAAACATGGGTATGGCTAT
GAAGTTAGAGAGCATCCTCAAGCTAGCTCGTACGAAAGCTAAACTTTGAG
GCGCGTCTCCATCCCTGCGTATCGGAGACAAAGATAGTCCCGTAGACGTG
ACGTTGCGTGTAAGCGACGCTGATTTTGTGCAAATCGTAACAGGGAAACT
CAACAGCCAGCAGGCGCTAAAAAATGAAGGCGCGGCCCTGGCCAAGAAGA
TCAATGGGAACTATCGCTTTGTGGTCGACGACGGGAATTGGGTGCTGGAT
CTGAAGATGGAGAAGGCCTTCATGAAAGGAAAATTAAAGATCAAGGGAAA
CATGGGTATGGCTATGAAGTTAGAGAGCATCCTCAAGCTAGCTCGTACGA
AAGCTAAACTTTGAGGCGCGTCTCCATCCCTGCGTATCGGAGACAAAGAT
AGTCCCGTAGACGTGACGTTGCGTGTAAGCGACGCTGATTTTGTGCAAAT
CGTAACAGGGAAACTCAACAGCCAGCAGGCGCTAAAAAATGAAGGCGCGG
CCCTGGCCAAGAAGATCAATGGGAACTATCGCTTTGTGGTCGACGACGGG
AATTGGGTGCTGGATCTGAAGATGGAGAAGGCCTTCATGAAAGGAAAATT
AAAGATCAAGGGAAACATGGGTATGGCTATGAAGTTAGAGAGCATCCTCA
AGCTAGCTCGTACGAAAGCTAAACTTTGAGGCGCGTCTCCATCCCTGCGT
ATCGGAGACAAAGATAGTCCCGTAGACGTGACGTTGCGTGTAAGCGACGC
TGATTTTGTGCAAATCGTAACAGGGAAACTCAACAGCCAGCAGGCGCTAA
AAAATGAAGGCGCGGCCCTGGCCAAGAAGATCAATGGGAACTATCGCTTT
GTGGTCGACGACGGGAATTGGGTGCTGGATCTGAAGATGGAGAAGGCCTT
CATGAAAGGAAAATTAAAGATCAAGGGAAACATGGGTATGGCTATGAAGT
TAGAGAGCATCCTCAAGCTAGCTCGTACGAAAGCTAAACTTTGAGGCGCG
TCTCCATCCCTGCGTATCGGAGACAAAGATAGTCCCGTAGACGTGACGTT
GCGTGTAAGCGACGCTGATTTTGTGCAAATCGTAACAGGGAAACTCAACA
GCCAGCAGGCGCTAAAAAATGAAGGCGCGGCCCTGGCCAAGAAGATCAAT
GGGAACTATCGCTTTGTGGTCGACGACGGGAATTGGGTGCTGGATCTGAA
GATGGAGAAG
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Synonyms
Publications