EWM22282.1, cds8394 (CDS) Nannochloropsis gaditana

Overview
NameEWM22282.1
Unique Namecds8394
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:645711..645719 -
Alignment locationKK037248.1:645461..645553 -
Alignment locationKK037248.1:645046..645159 -
Alignment locationKK037248.1:644779..644877 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22282.1
Productsterol carrier protein 2
Orig transcript idgnl|cribi|Naga_100569g6.10380.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:645711..645719 -
KK037248.1supercontigKK037248.1:645461..645553 -
KK037248.1supercontigKK037248.1:645046..645159 -
KK037248.1supercontigKK037248.1:644779..644877 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR003033SCP2_sterol-bd_dom
Homology
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|585102754|gb|EWM22282.1| (sterol carrier protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 207.223 bits (526), Expect = 1.018e-67
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query:    1 MEKALKNEGAALAKKINGNYRFVVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            MEKALKNEGAALAKKINGNYRFVVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL
Sbjct:    1 MEKALKNEGAALAKKINGNYRFVVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|669160674|ref|XP_008615899.1| (hypothetical protein SDRG_11631 [Saprolegnia diclina VS20] >gi|530732331|gb|EQC30573.1| hypothetical protein SDRG_11631 [Saprolegnia diclina VS20])

HSP 1 Score: 104.375 bits (259), Expect = 1.913e-25
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 0
Query:    3 KALKNEGAALAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            +A+K +G AL  K+ G  +F +   G W LDLK  + SL  G K  P D+T+ VSD DF+ I  GKLN+QQAFMKGKLK+KGNMG+AMKL  ++  A+ KAKL
Sbjct:  147 EAVKTQGPALVAKVKGTIQFNIAPGGAWFLDLKNGNGSLETGSK--PADLTINVSDEDFMAIADGKLNAQQAFMKGKLKVKGNMGLAMKLNIVIDAAKPKAKL 247          

HSP 2 Score: 79.7221 bits (195), Expect = 5.637e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   12 LAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            L KK+NG+ +F V   G W+++LK A  ++   +     D+T+ +S+ DFV ++  KLN Q AFMKGK+K+KGNMG+AMKL ++     TKA L
Sbjct:   22 LVKKVNGSIKFDVKGAGMWLINLKAAPGAVTASNAGEKADLTITISEPDFVDLINEKLNPQAAFMKGKIKVKGNMGLAMKLSAVTN--ATKAYL 113          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|1173928714|gb|OQR82234.1| (hypothetical protein ACHHYP_16346 [Achlya hypogyna])

HSP 1 Score: 103.99 bits (258), Expect = 3.026e-25
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 0
Query:    3 KALKNEGAALAKKINGNYRFVVDDGN-WVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            +A+K +G  L  K+ G  +F +  G  W LDLK  S SL  G K  P D+T+ V+D DFV I  GKLN+QQAFMKGKLK+KGNMG+AMKL  + + A+ KAKL
Sbjct:  152 EAVKTQGPQLVSKVKGTIQFNISPGGAWFLDLKNGSGSLVTGSK--PADLTINVADEDFVAIADGKLNAQQAFMKGKLKVKGNMGLAMKLNVVFEAAKPKAKL 252          

HSP 2 Score: 79.337 bits (194), Expect = 7.662e-16
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 0
Query:   12 LAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESI 94
            L KK+NG  +F V   G W++ LK A  ++         D+T+ +S+ADF+ ++  KLN Q AFMKGK+K+KGNMG+AMKL ++
Sbjct:   22 LVKKVNGTIKFDVKGAGLWLISLKAAPGAVTASTAAEKADLTITISEADFIDLINEKLNPQAAFMKGKIKVKGNMGLAMKLSAV 105          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|813117659|ref|XP_012195711.1| (hypothetical protein SPRG_19298 [Saprolegnia parasitica CBS 223.65] >gi|641539890|gb|KDO33685.1| hypothetical protein SPRG_19298 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 107.071 bits (266), Expect = 8.028e-25
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 0
Query:    3 KALKNEGAALAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            +A+K +G AL  K+ G  +F +   G W LDLK  + SL  G K  P D+T+ VSD DF+ I  GKLN+QQAFMKGKLK+KGNMG+AMKL  ++  A+ KAKL
Sbjct:  805 EAVKTQGPALVAKVKGTIQFNIAPGGAWFLDLKNGNGSLETGSK--PADLTINVSDEDFMAIADGKLNAQQAFMKGKLKVKGNMGLAMKLNIVIDAAKPKAKL 905          

HSP 2 Score: 81.2629 bits (199), Expect = 8.800e-16
Identity = 38/84 (45.24%), Postives = 58/84 (69.05%), Query Frame = 0
Query:   12 LAKKINGNYRFVVDD-GNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESI 94
            L KK+NG+ +F V   G W+++LK A  ++   +     D+T+ +S+ DFV ++  KLN Q AFMKGK+K+KGNMG+AMKL ++
Sbjct:  680 LVKKVNGSIKFDVKGAGMWLINLKAAPGAVTASNAGEKADLTITISEPDFVDLINEKLNPQAAFMKGKIKVKGNMGLAMKLSAV 763          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|953487999|emb|CEG48016.1| (scp2 sterol transfer family protein [Plasmopara halstedii])

HSP 1 Score: 99.3673 bits (246), Expect = 1.525e-23
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 0
Query:    8 EGAALAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            +G A++KK+ G  +F V   GNW LDLK  +P+L  G K +  DVT+ VSDADFV I  GKLN+QQAFMKGKLK+KGNM +AMKL  +    + ++KL
Sbjct:  151 DGVAMSKKVKGIIQFDVTGAGNWNLDLKSPTPALTEGSKQA--DVTITVSDADFVDIALGKLNAQQAFMKGKLKLKGNMTLAMKLPVVFNAIKPQSKL 246          

HSP 2 Score: 83.5741 bits (205), Expect = 2.250e-17
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 0
Query:    1 MEKALKNEGAALAKKINGNYRFVVDD-GNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAK 103
            M  A+   G +L KK+NG  +F +   G W++DLK  + S++        DVT+ +++ +F++++  KLN QQAFMKG LKIKGNMG+AMKL  +L   R   K
Sbjct:   12 MSAAIDEVGPSLQKKVNGVIKFDIGGAGVWLVDLKNGNGSVKSATASETADVTISLTEENFIKMMNNKLNPQQAFMKGVLKIKGNMGLAMKLNVVLAATRNYMK 115          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|1173954840|gb|OQS01981.1| (hypothetical protein THRCLA_05605 [Thraustotheca clavata])

HSP 1 Score: 99.3673 bits (246), Expect = 1.775e-23
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0
Query:    3 KALKNEGAALAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            +A+K +G  L  K+ G  +F +   G W LDLK  S  L  G K  P D+T+ VSD DF+ I  GKLN+QQAFMKGKLK+KGNMG+AMKL  ++  A+ K+KL
Sbjct:  144 EAVKTQGPQLVSKVKGTIQFNIAPGGAWYLDLKNGSGLLETGTK--PADLTINVSDDDFMAIADGKLNAQQAFMKGKLKVKGNMGLAMKLNVVIDAAKPKSKL 244          

HSP 2 Score: 85.5001 bits (210), Expect = 3.491e-18
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   12 LAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            L KK+NG+ +F V   G W+++LK A  S+   +     D+T+ +S+ADFV ++  KLN Q AFMKGKLKIKGNMG+AMKL ++   A TKA L
Sbjct:   22 LVKKVNGSIKFDVKGAGMWLINLKSAPGSVTASNATDKADLTITISEADFVDLINEKLNPQAAFMKGKLKIKGNMGLAMKLSAV--TAATKAYL 113          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|330804236|ref|XP_003290103.1| (hypothetical protein DICPUDRAFT_48962 [Dictyostelium purpureum] >gi|325079768|gb|EGC33352.1| hypothetical protein DICPUDRAFT_48962 [Dictyostelium purpureum])

HSP 1 Score: 102.064 bits (253), Expect = 2.328e-23
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 0
Query:    1 MEKALKNEGAALAKKINGNYRFVVDDGN----WVLDLKGASPSLRIGD--KDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILK 96
            ++K +++ GA L KKING Y F V +G+    WVLDLK  S S+ +G   K  P +VT+ VSD DF QI+TGKLN+Q AFMKGKLKI+GNMG+A KL SI++
Sbjct:  338 IQKTIQSNGADLVKKINGVYLFNVKNGSKVQSWVLDLKNGSGSISVGSESKGKP-NVTIAVSDDDFTQIMTGKLNAQSAFMKGKLKIQGNMGLATKLGSIMQ 438          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|695446584|ref|XP_009534521.1| (hypothetical protein PHYSODRAFT_347773 [Phytophthora sojae] >gi|348669838|gb|EGZ09660.1| hypothetical protein PHYSODRAFT_347773 [Phytophthora sojae])

HSP 1 Score: 97.8265 bits (242), Expect = 8.173e-23
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 0
Query:    8 EGAALAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            +GA++AKK+ G  +F +   G W LDLK A+P+L  G K +  DVT+ V+DADFV I  GKLN+QQAFMKGKLK+KGNM +AMKL  +    + ++KL
Sbjct:  157 DGASMAKKVKGVIQFDITGAGKWNLDLKSATPALTEGTKKA--DVTITVADADFVAIAMGKLNAQQAFMKGKLKLKGNMTLAMKLPVVFNALKPQSKL 252          

HSP 2 Score: 70.8626 bits (172), Expect = 1.534e-12
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 0
Query:    1 MEKALKNEGAALAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAK 103
            M  A+   G +L  K+ G  +F +   G W++DLK    S++        D+T+ +S+ +F++++  KLN QQAFMKG +KIKGNMG+AMKL  +L   R   K
Sbjct:   12 MSGAVDEVGPSLVSKVKGVIKFDISGAGAWLVDLKNGKGSVKAATAADKADLTITLSEENFLKMMDNKLNPQQAFMKGLVKIKGNMGLAMKLNVVLAATRNYMK 115          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|1214681736|gb|OWZ00353.1| (Peroxisomal protein pox18 [Phytophthora megakarya])

HSP 1 Score: 97.0561 bits (240), Expect = 1.356e-22
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 0
Query:    3 KALKNEGAALAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            +A+  +GA +AKK+ G  +F V   G W LDLK A+PSL  G + +  DVT+ +SD DFV I  GKLN+QQAFMKGKLK+KGNM +AMKL  +    + ++KL
Sbjct:  149 EAVAKDGAMMAKKVKGIIQFDVTGAGKWNLDLKSATPSLTEGSQKA--DVTITISDPDFVAIALGKLNAQQAFMKGKLKLKGNMTLAMKLPVVFNALKPQSKL 249          

HSP 2 Score: 79.337 bits (194), Expect = 7.325e-16
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0
Query:    1 MEKALKNEGAALAKKINGNYRF-VVDDGNWVLDLKGASPSLRIGDKDSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAK 103
            M  A+   G +L  K+ G  +F +   G W++DLK    S++    D   D+T+ +S+ DF++++  KLN QQAFMKG +KIKGNMG+AMKL  +L   R   K
Sbjct:   12 MSGAVDEVGPSLVSKVKGVIKFDISGAGAWLVDLKNGKGSVKSATADDKADLTITLSEEDFLKMMDNKLNPQQAFMKGLVKIKGNMGLAMKLNVVLAATRNYMK 115          
BLAST of EWM22282.1 vs. NCBI_GenBank
Match: gi|1004137947|gb|KXZ45967.1| (hypothetical protein GPECTOR_49g551 [Gonium pectorale])

HSP 1 Score: 93.9745 bits (232), Expect = 1.388e-22
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 0
Query:    6 KNEGAALAKKINGNYRFVVDDGNWVLDL-KGASPSLRIGDK---DSPVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMKLESILKLARTKAKL 104
            K EGAALA KI G   F +DD  W LDL +G   +L  G     D P D+TL +SD +FV +V GKLN QQAF+  KLKI G+MGMAMKL+ IL  A+ ++KL
Sbjct:   33 KGEGAALANKIKGVVVFKIDDDEWTLDLTEGTEGALYEGPPKSGDKP-DLTLTISDTNFVALVMGKLNPQQAFLMRKLKINGSMGMAMKLQPILDAAQPQSKL 134          
The following BLAST results are available for this feature:
BLAST of EWM22282.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102754|gb|EWM22282.1|1.018e-67100.00sterol carrier protein 2 [Nannochloropsis gaditana... [more]
gi|669160674|ref|XP_008615899.1|1.913e-2553.40hypothetical protein SDRG_11631 [Saprolegnia dicli... [more]
gi|1173928714|gb|OQR82234.1|3.026e-2553.40hypothetical protein ACHHYP_16346 [Achlya hypogyna... [more]
gi|813117659|ref|XP_012195711.1|8.028e-2553.40hypothetical protein SPRG_19298 [Saprolegnia paras... [more]
gi|953487999|emb|CEG48016.1|1.525e-2354.08scp2 sterol transfer family protein [Plasmopara ha... [more]
gi|1173954840|gb|OQS01981.1|1.775e-2351.46hypothetical protein THRCLA_05605 [Thraustotheca c... [more]
gi|330804236|ref|XP_003290103.1|2.328e-2355.88hypothetical protein DICPUDRAFT_48962 [Dictyosteli... [more]
gi|695446584|ref|XP_009534521.1|8.173e-2353.06hypothetical protein PHYSODRAFT_347773 [Phytophtho... [more]
gi|1214681736|gb|OWZ00353.1|1.356e-2251.46Peroxisomal protein pox18 [Phytophthora megakarya][more]
gi|1004137947|gb|KXZ45967.1|1.388e-2253.40hypothetical protein GPECTOR_49g551 [Gonium pector... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8421rna8421Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications