rna8416, rna8416 (mRNA) Nannochloropsis gaditana

Overview
Namerna8416
Unique Namerna8416
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationKK037248.1:630065..631088 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100224g7.5615.mrna
Orig protein idgnl|cribi|Naga_100224g7.5615
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:630065..631088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100224g7gene8157Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8416rna8416-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22284.1cds8389Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8416 ID=rna8416|Name=rna8416|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGATGGACAAAGGGCGTAACCTGCAGCGAGACGATGAAGGGACCGACAG
TGGCCTGACATGGAGAAGTCAACATGTGGGAAAGATGCGGTTGATGCTTG
AATATGAATGGGGAAAGGCGATATACTGTAATTTTGCTCGATTAGCCATT
ATGTATGCTTCAAGCTTGGAAGGGGGACTGATAAATATCTTGTGGTTTGA
GTAG
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protein sequence of rna8416

>rna8416-protein ID=rna8416-protein|Name=rna8416|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MSKASRRKYQLLLLLLWSLYAVGFRHFSTSRRHLSPSDLSIPLRATAATS
STTSTSPPSLASSPLSTSAARSRPSSSILDRIKAQAGTPEVLALLKEAVA
ATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKQKR
VKRDTRRIAEGLGPLHA
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mRNA from alignment at KK037248.1:630065..631088+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8416 ID=rna8416|Name=rna8416|organism=Nannochloropsis gaditana|type=mRNA|length=1024bp|location=Sequence derived from alignment at KK037248.1:630065..631088+ (Nannochloropsis gaditana)
gccccgcctcgccttAAAGCAGAAACGGCAACTGCGTACACTTCCTGTGC
AAGATGAGGTGACCTTTCGCTCAGTCGCACCCGATTCATACACCTAACCA
CGAACAGGAGGCAAAACTTGCGCGACGCATTATTTTCGTGCTTTGTACTT
TCCCGGCCTCCGCGCGACGtagccacctccccctcctcccttttggTTGA
GCCAGTCTCACGCTGCTGCGATGAGCAAAGCATCCCGGCGAAAgtaccag
ctcctcctccttcttctttggTCCCTCTATGCAGTGGGTTTCAGGCATTT
CTCTACCTCCCGTCGCCACCTCTCCCCGTCGGATTTGTCAATCCCTTTAA
GGGCAACGGCAGCTACTTCGTCGACGACCTCGACgagtcccccctccctt
gcctcctctcctctttcgacCTCTGCCGCGCGATCAAGACCCAGCTCGTC
CATTTTGGACCGCATCAAAGCTCAGGCTGGTACTCCTGAGGTCTTAGCTC
TCTTGAAAGAGGCGGTAGCCGCAACAGGCACAGGAGAGGTGAAGCGGGAA
TTCTTCAAGGTAATTATTGCCCCACCTGACCTTGTCTCTCTTTCGTACTC
TGAACCAGCAAGCGCACCCTTCATTGGGAGTGACGAGTTTACTGGCattg
ggaagagggagtaGGGATGGACGATAATGtatgggaaagggggcctgtcc
accaaggccgggaACGAACGTCAACGCCCATCAACCTCCATGACTCAACG
CGTACGCCGAGGCCCACGCCACGAATCGCTGAGACTTCTGACCCGGTgtc
atgcctccctctccccatccctggcgcttccattttccctccttgcccgc
ctGGGTGCACAGGCGAtattccccttccccctggaCGACTTCCAGCTCGC
GGCATTGGATGCCTTGGGGGGGCGAGAGAACGTGGTGGTATCGGCGCCCA
CGGGGTCAGGTAAGCAAAAGAGGGTAAAGAGGGACACACGCCGTATCGCT
GAGGGTCTCGGTCCGCTTCATGCC
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Coding sequence (CDS) from alignment at KK037248.1:630065..631088+

>rna8416 ID=rna8416|Name=rna8416|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at KK037248.1:630065..631088+ (Nannochloropsis gaditana)
ATGAGCAAAGCATCCCGGCGAAAgtaccagctcctcctccttcttctttg
gTCCCTCTATGCAGTGGGTTTCAGGCATTTCTCTACCTCCCGTCGCCACC
TCTCCCCGTCGGATTTGTCAATCCCTTTAAGGGCAACGGCAGCTACTTCG
TCGACGACCTCGACgagtcccccctcccttgcctcctctcctctttcgac
CTCTGCCGCGCGATCAAGACCCAGCTCGTCCATTTTGGACCGCATCAAAG
CTCAGGCTGGTACTCCTGAGGTCTTAGCTCTCTTGAAAGAGGCGGTAGCC
GCAACAGGCACAGGAGAGGTGAAGCGGGAATTCTTCAAGGCGAtattccc
cttccccctggaCGACTTCCAGCTCGCGGCATTGGATGCCTTGGGGGGGC
GAGAGAACGTGGTGGTATCGGCGCCCACGGGGTCAGGTAAGCAAAAGAGG
GTAAAGAGGGACACACGCCGTATCGCTGAGGGTCTCGGTCCGCTTCATGC
CATGAGCAAAGCATCCCGGCGAAAgtaccagctcctcctccttcttcttt
ggTCCCTCTATGCAGTGGGTTTCAGGCATTTCTCTACCTCCCGTCGCCAC
CTCTCCCCGTCGGATTTGTCAATCCCTTTAAGGGCAACGGCAGCTACTTC
GTCGACGACCTCGACgagtcccccctcccttgcctcctctcctctttcga
cCTCTGCCGCGCGATCAAGACCCAGCTCGTCCATTTTGGACCGCATCAAA
GCTCAGGCTGGTACTCCTGAGGTCTTAGCTCTCTTGAAAGAGGCGGTAGC
CGCAACAGGCACAGGAGAGGTGAAGCGGGAATTCTTCAAGGCGAtattcc
ccttccccctggaCGACTTCCAGCTCGCGGCATTGGATGCCTTGGGGGGG
CGAGAGAACGTGGTGGTATCGGCGCCCACGGGGTCAGGTAAGCAAAAGAG
GGTAAAGAGGGACACACGCCGTATCGCTGAGGGTCTCGGTCCGCTTCATG
CC
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Synonyms
Publications