EWM22284.1, cds8389 (CDS) Nannochloropsis gaditana

Overview
NameEWM22284.1
Unique Namecds8389
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:630285..630623 +
Alignment locationKK037248.1:630927..631088 +

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Properties
Property NameValue
End range.
End range631088
Protein idEWM22284.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100224g7.5615.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:630285..630623 +
KK037248.1supercontigKK037248.1:630927..631088 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM22284.1 vs. NCBI_GenBank
Match: gi|585102758|gb|EWM22284.1| (hypothetical protein Naga_100224g7, partial [Nannochloropsis gaditana])

HSP 1 Score: 328.561 bits (841), Expect = 1.167e-113
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MSKASRRKYQLLLLLLWSLYAVGFRHFSTSRRHLSPSDLSIPLRATAATSSTTSTSPPSLASSPLSTSAARSRPSSSILDRIKAQAGTPEVLALLKEAVAATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKQKRVKRDTRRIAEGLGPLHA 167
            MSKASRRKYQLLLLLLWSLYAVGFRHFSTSRRHLSPSDLSIPLRATAATSSTTSTSPPSLASSPLSTSAARSRPSSSILDRIKAQAGTPEVLALLKEAVAATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKQKRVKRDTRRIAEGLGPLHA
Sbjct:    1 MSKASRRKYQLLLLLLWSLYAVGFRHFSTSRRHLSPSDLSIPLRATAATSSTTSTSPPSLASSPLSTSAARSRPSSSILDRIKAQAGTPEVLALLKEAVAATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKQKRVKRDTRRIAEGLGPLHA 167          
BLAST of EWM22284.1 vs. NCBI_GenBank
Match: gi|553190157|ref|XP_005855139.1| (hypothetical protein NGA_0090600, partial [Nannochloropsis gaditana CCMP526] >gi|422293921|gb|EKU21221.1| hypothetical protein NGA_0090600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 228.409 bits (581), Expect = 8.774e-74
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
Query:   45 ATAATSSTTSTSPPSLASSPLSTSAARSRPSSSILDRIKAQAGTPEVLALLKEAVAATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKQKRVKRDTRRIAEGL 162
            ATAATSSTTSTSPPSLASSPLSTSAARSRPSSSILDRIKAQAGTPEVLALLKEAVAATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKQKRVKRDTRRIAEGL
Sbjct:    1 ATAATSSTTSTSPPSLASSPLSTSAARSRPSSSILDRIKAQAGTPEVLALLKEAVAATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKQKRVKRDTRRIAEGL 118          
BLAST of EWM22284.1 vs. NCBI_GenBank
Match: gi|298713164|emb|CBJ26920.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 68.9366 bits (167), Expect = 1.333e-10
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   81 RIKAQAGTPEVLALLKEAVAATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGK 147
             ++  AG+   + LL+  V AT  G V+ E F+A+FPF LD FQ  AL  L GR NV+VSAPTGSGK
Sbjct:  351 ELQEVAGSASAVPLLQSIVNATPDGAVQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGK 417          
BLAST of EWM22284.1 vs. NCBI_GenBank
Match: gi|551656783|ref|XP_005831164.1| (hypothetical protein GUITHDRAFT_109969 [Guillardia theta CCMP2712] >gi|428175293|gb|EKX44184.1| hypothetical protein GUITHDRAFT_109969 [Guillardia theta CCMP2712])

HSP 1 Score: 58.9214 bits (141), Expect = 4.663e-7
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   81 RIKAQAGTPEVLALLKEAVAATGTGEVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGK 147
             I + +GTPEV+  L+     TG  ++  E   + FPFP+D+FQ+ A+ AL  + +V+VSAPTGSGK
Sbjct:   30 NIASLSGTPEVVDALRSKFRQTG--QITTEELASCFPFPVDEFQMDAIRALIEKRSVIVSAPTGSGK 94          
The following BLAST results are available for this feature:
BLAST of EWM22284.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585102758|gb|EWM22284.1|1.167e-113100.00hypothetical protein Naga_100224g7, partial [Nanno... [more]
gi|553190157|ref|XP_005855139.1|8.774e-74100.00hypothetical protein NGA_0090600, partial [Nannoch... [more]
gi|298713164|emb|CBJ26920.1|1.333e-1052.24DEAD box helicase [Ectocarpus siliculosus][more]
gi|551656783|ref|XP_005831164.1|4.663e-744.78hypothetical protein GUITHDRAFT_109969 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8416rna8416Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications