rna8400, rna8400 (mRNA) Nannochloropsis gaditana

Overview
Namerna8400
Unique Namerna8400
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length330
Alignment locationKK037248.1:576030..576829 +

Link to JBrowse

Properties
Property NameValue
ProductIQ motif, EF-hand binding site
Orig transcript idgnl|cribi|Naga_100913g1.374.mrna
Orig protein idgnl|cribi|Naga_100913g1.374
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:576030..576829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100913g1gene8140Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8400rna8400-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22299.1cds8373Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8400 ID=rna8400|Name=rna8400|organism=Nannochloropsis gaditana|type=mRNA|length=330bp
ATGAGGCTAGCAGAGGGCGATTTAAACTGTCATAGCTGGCTCCAGCGTCT
TCTAGCCGCCCCTGTCCGCAGCAGTATGGATCCTCTCGCCACTTCCTCTC
CCCCTTCCTCCCCCCCTTCCTCCCCCCCGCCCTCCCAACCCCTGCCCCCA
CCTTCCCAGGGCCTGGGCCTCGGCTCCCTCTTCCCCACGCTCACCCCGCG
CCGGCACCGCCCACCTCCACCGGTACCCGCAATACGGACAGAGGATTGGC
CTCGGAACACTTTTTGTCGGGATCTGCGTGGGCGAGCTTGGTCCGTATCG
TGGTCGAGGCCCTCTCCTCCGGGTATTTGA
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protein sequence of rna8400

>rna8400-protein ID=rna8400-protein|Name=rna8400|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MTVLGDKGEGGREGGGEGVKVGVGEAYDRLVGPGVRTTEEGKKMARSLEE
DVVGLQNQARGKLARKLRRVLEEPLMDVCKRIVEARCAGSAYASVRGFRR
DVHRECGHFVRKHEVGGKLSARMVQQVIDQFIDMELGACLETVGKEERRL
RFWRKVTWGVGGGLGPPCLHEISDRDCAGRWLPAPSSRA
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mRNA from alignment at KK037248.1:576030..576829+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8400 ID=rna8400|Name=rna8400|organism=Nannochloropsis gaditana|type=mRNA|length=800bp|location=Sequence derived from alignment at KK037248.1:576030..576829+ (Nannochloropsis gaditana)
ATGACGGTGttgggagacaagggggaaggagggagggagggcggggggga
gggcgtgaaggTGGGAGTGGGGGAAGCGTACGATCGGTTGGTGGGCCCCG
GGGTTCGAaccacggaggaagggaaaaagatgGCGCGAAgcttggaggaa
gacgtggttGGCTTGCAAAACCAAGCCCGAGGGAAATTGGCGCGAAAGCT
GCGGCGGGTCTTGGAGGAACCCTTGATGGACGTGTGCAAGCGTATTGTAG
AAGCCCGGTGCGCGGGCTCGGCCTATGCGTCCGTGCGAGGGTTTCGACGG
GATGTGCACCGGGAATGCGGCCATTTCGTGCGGAAGCACGAGGTAGGGGG
AAAGCTGTCCGCTCGAATGGTGCAGCAGGTGATCGACCAGTTCATTGACA
TGGAACTAGGGGCCTGTTTGGAgacggtggggaaagaggaacgCCGGTTG
CGGTTTTGGCGGAAAGTCACatggggagtgggggggggcctTGGCCCTCC
TTGCCTACATGAAATATCAGACAGGGACTGTGCAGGGCGGTGGCTTCCTG
CCCCGTCCTCAAGAGCGTGagcgccctcgtcccccctcACCGCTAccggc
gggcgggaagggggcgtggagagggagatgacgAGGGAGATAGATGgagg
ggtgaggaaggggagaggttCGGGTACATTAGAAAAGATACGATATCGGC
ACAAAGCAATGCTGCGGAGGCAGATCGATCATGGGGGCGCGAAGCAAACA
CGTCCTGCCGACATGTTTATGTGAAGCATTCAAGCGAGTCAAATTGAGAG
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Coding sequence (CDS) from alignment at KK037248.1:576030..576829+

>rna8400 ID=rna8400|Name=rna8400|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at KK037248.1:576030..576829+ (Nannochloropsis gaditana)
ATGACGGTGttgggagacaagggggaaggagggagggagggcggggggga
gggcgtgaaggTGGGAGTGGGGGAAGCGTACGATCGGTTGGTGGGCCCCG
GGGTTCGAaccacggaggaagggaaaaagatgGCGCGAAgcttggaggaa
gacgtggttGGCTTGCAAAACCAAGCCCGAGGGAAATTGGCGCGAAAGCT
GCGGCGGGTCTTGGAGGAACCCTTGATGGACGTGTGCAAGCGTATTGTAG
AAGCCCGGTGCGCGGGCTCGGCCTATGCGTCCGTGCGAGGGTTTCGACGG
GATGTGCACCGGGAATGCGGCCATTTCGTGCGGAAGCACGAGGTAGGGGG
AAAGCTGTCCGCTCGAATGGTGCAGCAGGTGATCGACCAGTTCATTGACA
TGGAACTAGGGGCCTGTTTGGAgacggtggggaaagaggaacgCCGGTTG
CGGTTTTGGCGGAAAGTCACatggggagtgggggggggcctTGGCCCTCC
TTGCCTACATGAAATATCAGACAGGGACTGTGCAGGGCGGTGGCTTCCTG
CCCCGTCCTCAAGAGCGTGa
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Synonyms
Publications