rna84, rna84 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna84
Unique Name	rna84
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1521
Alignment location	CM002455.1:230220..233218 +

Link to JBrowse

Properties


Property Name	Value
Product	tubulin--tyrosine ligase-like protein
Orig transcript id	gnl\|cribi\|Naga_100033g8.8406.mrna
Orig protein id	gnl\|cribi\|Naga_100033g8.8406
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:230220..233218 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g8	gene82	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna84	rna84-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30567.1	cds84	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:230220..233218+
coding sequence from alignment at CM002455.1:230220..233218+

mRNA sequence

>rna84 ID=rna84|Name=rna84|organism=Nannochloropsis gaditana|type=mRNA|length=1521bp
GTGAAAGCTAAGGGAAAAGCTTTTTTGCAACACCGATAGTTTAAGAAGCC
AGAAGTATCAAGCTATATCAATAATGTATGTGCTTGCGCATGAATAGCAC
GTATACGCTCGTTAGATATCAATAGCAAGGGCGGCTTGTAGGTTATACGG
GGAGGTTGCCTACTATCGTTAGCTTTCCAAAAACTCAAACATTTTCGAGT
TTTACGGTCCAAATCCATTTTGGACCCTTACCATATCAACGACAATTTTA
CAGGTCTTAGTCCAACACGGTGTGAGTACCTCGAGCTGCGCGTCGCGCTT
GACGTTGAACCTGAAACGCTTACGCCAAACCTGTGTCCTTGTCTCCCAAG
AGCTTGCTTGAGCGATTCCGACTTTTTGGGACAGGAAGAGCGCCTTTCCC
GGAATCTCAATGCCCATGGAGAATGGTATTACGGCCTTACGCTTGTGGAA
AACTGCGTCAAGTGCGTCAGATTTTCGAGATGCGATCGATGCGCACTATC
AGGCGTGCATCGTAGCCATGGAGAGAGCTGGCAAAAAAGAATTGGTAAAG
CTCGACAATTTTTGGCGGAAAACCTTTCCCGCAACACTTCAAAGACGCCA
GTCTGAAAACAAAGGAAATGATTGCTGGATAACGAAAGAAGAACTTGTTC
AAACCATGCAATGGAAGCTTGCACGGGGAAAGATGCGGCCGTTGATGAAC
CTGGTCAGGGGAAACGACTCTGGTACCGTGGAACGCATCAGCCGTTCAGC
CCTGATAGCGGCACAAAAAGGTGACATTTCAAACGCGGTGACGATTTTCT
CTGGGGCAGAACTCAAAGGCGTTGGGCCGGCGACCGCTTCGGCTCTTCTA
GCGGCCTATCGCCCCGACTTATTTCCCTTCATGGCGGACGAGCCAACCAT
GCTTGTTTTGGACGAAAGTGGCCAGAATGGGAAGCTGAAATACAACCTAG
CTGAGTACTTGGTCTTTCAAAGGGCAATTATTGGAAAATGTCGCGAGATT
AATGTACCCGGGGAAAAGGCAAAGTCAGGAACTGCAAGGCCTTTGGATGC
TGAAGAAGTCGGACGAGCGTTGTGGTGTCTTAACCGTGCGGAGGCTTTAG
GATTATTATCCCAAGAAGAGCAAAGAACGTTGCTCGGTACAAAGAGACAA
GCTCATGATAGTCAAGGGGTGGACGGCCGCAAGGAGCAGAGAGCGGATCG
AAAGAAGAAGAAACAATCTGATTGAGATCATGCAACTTGTCAGCCATTTT
GTACTATCCACTTGGTTGCGTGTATCGCTCTTCTTACGTGTCCGGTTAGC
ATTTCTTCGTCTCGTCCCATTGCGTTGGGGTGAGACACTTGAGAGTGATG
GCATGTATGTGCTCCAATTCTTTCGCAAGAGCCGCATTCACAGCTCGGTG
CCGTTGTAGAAGAGGTCTTCCTTCGAATGTCGGAGAAACTGTGAGGATTT
CAAATTTAGCTCCACCTGTGGGAAGTGCAGCAGGGGATCCCAAGAAAATG
TGAACCATCCTCAAGTCATCA

protein sequence of rna84

>rna84-protein ID=rna84-protein|Name=rna84|organism=Nannochloropsis gaditana|type=polypeptide|length=698bp
MDASATSSPPPSSFLDRHRKQLESVGFPPTLYSRLESKLVGETFDAGDTF
GVVEDESQRRAVVCSAANGLEPQCDVWLIDHLYSFQVETYRQDLQKRPEL
LSRLAVMMGLEEPHEDGIFEEETPETSMEKNPIPPLASVPTPGLRAEKRP
DSLNLNEETLCLRRPHRRERPTLYEQVCEQIWRYVSSYRLVDPGDPFKFK
TVWFVKDEFGSAFQHAPPALVNFRISPFIYFPPTGSLKGAMGYSLAWPIA
NIAEGEECTHDYAFGCANVRDNSITQEEKFLRWMKRACRLAVWFELPLSV
RAIFEAAHAERKQLFLSLAVSVNAASKPVADPSTALAAHFSRSWRHSPLV
LRVYNDNGQVLRHLSRADVQRAAEPAEADVLWVYHTAITPHYRRRHGLGL
DVVVSQTGGDECLVFKHLLPLTATRAPGSQAWLPDTYNMETETAAFIHEY
SRRSDEAHRSGEGAEHPPHAQEHGPSTPLSPLFILKPWNLGRSMDSAVAD
SLPQALQLAKTCPKVASQYVYDIATVNDRKFDVRYRLFVRAWEPLEIFRW
VHWGVRVSNHPYSLAAENINDFQAHFTVMDYAGYTQTPVSETDFLEAFER
DNGGVPWSEVDSKVEKIIKNLFETAAILILERTGREEVAQSFSFYGVDVM
VTKDLQPKILECTFGPDCASALKLDADFYNKAFGIIFRGEEYEDFRQL

mRNA from alignment at CM002455.1:230220..233218+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna84 ID=rna84|Name=rna84|organism=Nannochloropsis gaditana|type=mRNA|length=2999bp|location=Sequence derived from alignment at CM002455.1:230220..233218+ (Nannochloropsis gaditana)
TTGTTTTCAGACTGGCGTCTTTGAAGTGTTGCGGGAAAGGTTTTCCGCCA
AAAATTGTCGAGCTTTACCAATTCTTTTTTGCCAGCTCTCTCCATGGCTA
CGATGCACGCCTGATAGTGCGCATCGATCGCATCTCGAAAATCTGACGCA
CTTGACGCAGTTTTCCACAAGCGTAAGGCCGTAATACCATTCTCCATGGG
CATTGAGATTCCGGGAAAGGCGCTCTTCCTGTCCCAAAAAGTCGGAATCG
CTCAAGCAAGCTCTTGGGAGACAAGGACACAGGTTTGGCGTAAGCGTTTC
AGGTTCAACGTCAAGCGCGACGCGCAGCTCGAGGTACTCACACCGTGTTG
GACTAAGACCTGTAAAATTGTCGTTGATATGGTAAGGGTCCAAAATGGAT
TTGGACCGTAAAACTCGAAAATGTTTGAGTTTTTGGAAAGCTAACGATAG
TAGGCAACCTCCCCGTATAACCTACAAGCCGCCCTTGCTATTGATATCTA
ACGAGCGTATACGTGCTATTCATGCGCAAGCACATACATTATTGATATAG
CTTGATACTTCTGGCTTCTTAAACTATCGGTGTTGCAAAAAAGCTTTTCC
CTTAGCTTTCACAGGGATGGATGCCTCCGCAACCagttcgcctcctccat
catctttTCTTGACCGTCACCGTAAGCAGCTTGAATCGGTAGGCTTTCCA
CCAACACTGTACTCCCGCCTGGAGTCAAAGCTTGTGGGGGAGACTTTTGA
TGCGGGAGACACCTTTGGGGTCGTGGAGGATGAGTCTCAAAGACGTGCAG
TGGTATGTAGTGCTGCCAACGGGCTGGAGCCGCAGTGCGACGTCTGGTTA
ATCGACCACTTGTACTCCTTTCAAGTTGAGACCTACCGCCAGGACCTCCA
AAAGCGTCCTGAGCTGCTTTCCCGGCTGGCAGTCATgatgggcttggagg
aaCCACACGAGGACGGGATCTTCGAGGAGGAAACTCCTGAGACCAGTATG
GAAAAAaatcccatccctccccttgcttccGTCCCTACGCCAGGGCTTCG
AGCGGAAAAAAGGCCAGACAGCTTAAATCTGAACGAGGAAACGCTTTGTC
TGCGCCGACCACACCGGCGGGAGAGGCCCACATTGTACGAACAGGTTTGC
GAACAGATCTGGCGCTACGTCTCTTCCTACCGGCTGGTGGACCCCGGGGA
CCCATTCAAATTCAAAACCGTGTGGTTCGTCAAGGACGAGTTCGGCTCTG
CATTTCAGCACGCACCTCCGGCGCTGGTGAATTTTCGCATCTCTCCCTTT
ATATATTTCCCACCGACGGGGAGCCTGAAAGGGGCCATGGGCTACTCTTT
GGCTTGGCCCATCGCGAACAttgcggagggcgaggaatgCACACACGACT
ACGCGTTTGGCTGCGCCAATGTGCGCGACAATTCCATCACCCAGGAAGAA
AAATTCTTAAGGTGGATGAAACGGGCATGCAGGCTAGCTGTGTGGTTCGA
GTTGCCTTTGTccgttcgcgccattttcgaGGCCGCTCACGCAGAGAGAA
AGcagcttttcctctccttggctGTGTCGGTCAATGCTGCCTCGAAGCCC
GTTGCGGATCCATCCACCGCACTTGCCGCGCACTTCAGCCGCTCTTGGCG
GCATTCGCCACTGGTCTTGAGGGTGTACAACGATAACGGCCAGGTTCTCC
GGCATTTGAGCCGCGCAGACGTCCAGCGGGCGGCAGAGCCCGCCGAGGCC
GACGTACTCTGGGTTTACCACACGGCCATTACTCCCCACTACCGACGCAG
GCATGGGCTGGGattggacgtggtggtgagCCAGACGGGGGGCGACGAGT
GTCTGGTCTTCAAACATCTGCTACCCCTGACGGCCACTCGGGCTCCCGGC
AGCCAGGCCTGGCTCCCTGATACGTACAATATGGAAACGGAGACTGCGGC
ATTCATCCACGAGTACTCTCGACGGAGCGATGAGGCACACaggagcgggg
aaggggccgAGCACCCACCCCACGCCCAGGAGCACGGTCCGAGCActccc
ctgtcccctctCTTCATTCTCAAACCGTGGAACCTGGGTCGGTCCATGGA
CTCCGCCGTTGccgattccctccctcaggctcTCCAACTGGCCAAGACAT
GCCCCAAAGTGGCCTCTCAGTATGTTTATGACATTGCGACCGTCAACGAC
AGAAAATTTGACGTGCGATACCGCCTTTTTGTGCGAGCATGGGAGCCGTT
GGAGATTTTTCGGTGGGTGCACTGGGGCGTCCGTGTATCCAACCATCCCT
ACTCACTGGCAGCGGAAAACATCAATGATTTTCAGGTGCGTGGGCCATTT
GGTCGGAAGAAATTAAGGGAGGGCAACGTCGGGAGGATGCTGTCGTGTGT
TGCCCTGGCTTTGAGGTAACTgagcgacggaggggacGGCACGTTGCTGT
CATAACACTGACAATCTTGGGTCCCGCCCTCTTGTTTTAGGCTCACTTCA
CAGTCATGGACTATGCCGGATACACGCAAACGCCCGTGTCGGAGACCGAC
TTTTTGGAAGCTTTCGAGCGGGACAATGGAGGCGTACCCTGGTCGGAGGT
GGACTCCAAAGTCGAGAAAATCATCAAAAATCTTTTTGAAACTGCCGCCA
TTCTCATCCTGGAgcggacagggagagaagaagtaGCGCAATCGTTTTCT
TTTTACGGTGTGGATGTCATGGTTACCAAGGATTTGCAGCCCAAAATTTT
GGAATGCACGTTCGGTCCAGATTGCGCATCCGCCCTCAAACTTGACGCAG
ACTTCTACAATAAGGCTTTCGGGATTATATTCCGAGGTGAGGAGTACGAG
GATTTCCGACAACTGTAAAACTTCTGATGTTGCGCTTGAAAGCACATGCG
TGTCTACGAAGGGAAGACTGACGATCAAACACATATTTACGAGAAAATCA
AAACAAAATAGAAATAAATAAATTTAAATGAATGTGTCAAAATCCTTCG

Coding sequence (CDS) from alignment at CM002455.1:230220..233218+

>rna84 ID=rna84|Name=rna84|organism=Nannochloropsis gaditana|type=CDS|length=4194bp|location=Sequence derived from alignment at CM002455.1:230220..233218+ (Nannochloropsis gaditana)
ATGGATGCCTCCGCAACCagttcgcctcctccatcatctttTCTTGACCG
TCACCGTAAGCAGCTTGAATCGGTAGGCTTTCCACCAACACTGTACTCCC
GCCTGGAGTCAAAGCTTGTGGGGGAGACTTTTGATGCGGGAGACACCTTT
GGGGTCGTGGAGGATGAGTCTCAAAGACGTGCAGTGGTATGTAGTGCTGC
CAACGGGCTGGAGCCGCAGTGCGACGTCTGGTTAATCGACCACTTGTACT
CCTTTCAAGTTGAGACCTACCGCCAGGACCTCCAAAAGCGTCCTGAGCTG
CTTTCCCGGCTGGCAGTCATgatgggcttggaggaaCCACACGAGGACGG
GATCTTCGAGGAGGAAACTCCTGAGACCAGTATGGAAAAAaatcccatcc
ctccccttgcttccGTCCCTACGCCAGGGCTTCGAGCGGAAAAAAGGCCA
GACAGCTTAAATCTGAACGAGGAAACGCTTTGTCTGCGCCGACCACACCG
GCGGGAGAGGCCCACATTGTACGAACAGGTTTGCGAACAGATCTGGCGCT
ACGTCTCTTCCTACCGGCTGGTGGACCCCGGGGACCCATTCAAATTCAAA
ACCGTGTGGTTCGTCAAGGACGAGTTCGGCTCTGCATTTCAGCACGCACC
TCCGGCGCTGGTGAATTTTCGCATCTCTCCCTTTATATATTTCCCACCGA
CGGGGAGCCTGAAAGGGGCCATGGGCTACTCTTTGGCTTGGCCCATCGCG
AACAttgcggagggcgaggaatgCACACACGACTACGCGTTTGGCTGCGC
CAATGTGCGCGACAATTCCATCACCCAGGAAGAAAAATTCTTAAGGTGGA
TGAAACGGGCATGCAGGCTAGCTGTGTGGTTCGAGTTGCCTTTGTccgtt
cgcgccattttcgaGGCCGCTCACGCAGAGAGAAAGcagcttttcctctc
cttggctGTGTCGGTCAATGCTGCCTCGAAGCCCGTTGCGGATCCATCCA
CCGCACTTGCCGCGCACTTCAGCCGCTCTTGGCGGCATTCGCCACTGGTC
TTGAGGGTGTACAACGATAACGGCCAGGTTCTCCGGCATTTGAGCCGCGC
AGACGTCCAGCGGGCGGCAGAGCCCGCCGAGGCCGACGTACTCTGGGTTT
ACCACACGGCCATTACTCCCCACTACCGACGCAGGCATGGGCTGGGattg
gacgtggtggtgagCCAGACGGGGGGCGACGAGTGTCTGGTCTTCAAACA
TCTGCTACCCCTGACGGCCACTCGGGCTCCCGGCAGCCAGGCCTGGCTCC
CTGATACGTACAATATGGAAACGGAGACTGCGGCATTCATCCACGAGTAC
TCTCGACGGAGCGATGAGGCACACaggagcggggaaggggccgAGCACCC
ACCCCACGCCCAGGAGCACGGTCCGAGCActcccctgtcccctctCTTCA
TTCTCAAACCGTGGAACCTGGGTCGGTCCATGGACTCCGCCGTTGccgat
tccctccctcaggctcTCCAACTGGCCAAGACATGCCCCAAAGTGGCCTC
TCAGTATGTTTATGACATTGCGACCGTCAACGACAGAAAATTTGACGTGC
GATACCGCCTTTTTGTGCGAGCATGGGAGCCGTTGGAGATTTTTCGGTGG
GTGCACTGGGGCGTCCGTGTATCCAACCATCCCTACTCACTGGCAGCGGA
AAACATCAATGATTTTCAGGCTCACTTCACAGTCATGGACTATGCCGGAT
ACACGCAAACGCCCGTGTCGGAGACCGACTTTTTGGAAGCTTTCGAGCGG
GACAATGGAGGCGTACCCTGGTCGGAGGTGGACTCCAAAGTCGAGAAAAT
CATCAAAAATCTTTTTGAAACTGCCGCCATTCTCATCCTGGAgcggacag
ggagagaagaagtaGCGCAATCGTTTTCTTTTTACGGTGTGGATGTCATG
GTTACCAAGGATTTGCAGCCCAAAATTTTGGAATGCACGTTCGGTCCAGA
TTGCGCATCCGCCCTCAAACTTGACGCAGACTTCTACAATAAGGCTTTCG
GGATTATATTCCGAGGTGAGGAGTACGAGGATTTCCGACAACTGTAAATG
GATGCCTCCGCAACCagttcgcctcctccatcatctttTCTTGACCGTCA
CCGTAAGCAGCTTGAATCGGTAGGCTTTCCACCAACACTGTACTCCCGCC
TGGAGTCAAAGCTTGTGGGGGAGACTTTTGATGCGGGAGACACCTTTGGG
GTCGTGGAGGATGAGTCTCAAAGACGTGCAGTGGTATGTAGTGCTGCCAA
CGGGCTGGAGCCGCAGTGCGACGTCTGGTTAATCGACCACTTGTACTCCT
TTCAAGTTGAGACCTACCGCCAGGACCTCCAAAAGCGTCCTGAGCTGCTT
TCCCGGCTGGCAGTCATgatgggcttggaggaaCCACACGAGGACGGGAT
CTTCGAGGAGGAAACTCCTGAGACCAGTATGGAAAAAaatcccatccctc
cccttgcttccGTCCCTACGCCAGGGCTTCGAGCGGAAAAAAGGCCAGAC
AGCTTAAATCTGAACGAGGAAACGCTTTGTCTGCGCCGACCACACCGGCG
GGAGAGGCCCACATTGTACGAACAGGTTTGCGAACAGATCTGGCGCTACG
TCTCTTCCTACCGGCTGGTGGACCCCGGGGACCCATTCAAATTCAAAACC
GTGTGGTTCGTCAAGGACGAGTTCGGCTCTGCATTTCAGCACGCACCTCC
GGCGCTGGTGAATTTTCGCATCTCTCCCTTTATATATTTCCCACCGACGG
GGAGCCTGAAAGGGGCCATGGGCTACTCTTTGGCTTGGCCCATCGCGAAC
AttgcggagggcgaggaatgCACACACGACTACGCGTTTGGCTGCGCCAA
TGTGCGCGACAATTCCATCACCCAGGAAGAAAAATTCTTAAGGTGGATGA
AACGGGCATGCAGGCTAGCTGTGTGGTTCGAGTTGCCTTTGTccgttcgc
gccattttcgaGGCCGCTCACGCAGAGAGAAAGcagcttttcctctcctt
ggctGTGTCGGTCAATGCTGCCTCGAAGCCCGTTGCGGATCCATCCACCG
CACTTGCCGCGCACTTCAGCCGCTCTTGGCGGCATTCGCCACTGGTCTTG
AGGGTGTACAACGATAACGGCCAGGTTCTCCGGCATTTGAGCCGCGCAGA
CGTCCAGCGGGCGGCAGAGCCCGCCGAGGCCGACGTACTCTGGGTTTACC
ACACGGCCATTACTCCCCACTACCGACGCAGGCATGGGCTGGGattggac
gtggtggtgagCCAGACGGGGGGCGACGAGTGTCTGGTCTTCAAACATCT
GCTACCCCTGACGGCCACTCGGGCTCCCGGCAGCCAGGCCTGGCTCCCTG
ATACGTACAATATGGAAACGGAGACTGCGGCATTCATCCACGAGTACTCT
CGACGGAGCGATGAGGCACACaggagcggggaaggggccgAGCACCCACC
CCACGCCCAGGAGCACGGTCCGAGCActcccctgtcccctctCTTCATTC
TCAAACCGTGGAACCTGGGTCGGTCCATGGACTCCGCCGTTGccgattcc
ctccctcaggctcTCCAACTGGCCAAGACATGCCCCAAAGTGGCCTCTCA
GTATGTTTATGACATTGCGACCGTCAACGACAGAAAATTTGACGTGCGAT
ACCGCCTTTTTGTGCGAGCATGGGAGCCGTTGGAGATTTTTCGGTGGGTG
CACTGGGGCGTCCGTGTATCCAACCATCCCTACTCACTGGCAGCGGAAAA
CATCAATGATTTTCAGGCTCACTTCACAGTCATGGACTATGCCGGATACA
CGCAAACGCCCGTGTCGGAGACCGACTTTTTGGAAGCTTTCGAGCGGGAC
AATGGAGGCGTACCCTGGTCGGAGGTGGACTCCAAAGTCGAGAAAATCAT
CAAAAATCTTTTTGAAACTGCCGCCATTCTCATCCTGGAgcggacaggga
gagaagaagtaGCGCAATCGTTTTCTTTTTACGGTGTGGATGTCATGGTT
ACCAAGGATTTGCAGCCCAAAATTTTGGAATGCACGTTCGGTCCAGATTG
CGCATCCGCCCTCAAACTTGACGCAGACTTCTACAATAAGGCTTTCGGGA
TTATATTCCGAGGTGAGGAGTACGAGGATTTCCGACAACTGTAA

Synonyms

Publications