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Properties
| Property Name | Value |
|---|
| Product | Calponin domain containing protein |
| Orig transcript id | gnl|cribi|Naga_100465g3.10753.mrna |
| Orig protein id | gnl|cribi|Naga_100465g3.10753 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:562378..565704 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8393 ID=rna8393|Name=rna8393|organism=Nannochloropsis gaditana|type=mRNA|length=807bp
ATGTCTCAAGGCTGGACAACCTCCTCTCCCTTCCAAACCCGGCTTGACAT
TGTGAAGCACGTTGTTTCCGTATTCCTTTCCGTGAAAACGCGTCTGTGTC
TTCGGCATAAATTCGCTTTAGTAAGCGTGGATGGGCGTGGAAGCCAAATG
CTCCTCCCCTTCACATCCTCGTTGCAGGAGTTCACGAGGAAGCTCGAAAC
GCTGTCGTCGACGACGGCTGCGACAAGCACTGTGGACTCCGACACACAGG
ACGATGCCCTCCACCTCGCTCATCTCCTCGGTGAAACCCTACCGTCCTTT
TTCTCGTCGAGCAAAAAAAAGAAAGAAGAATGGGAAGAATTGGACGCCAC
CACGTTTTCATGTCCACCTCCCTTACTCCGCGCGATCCTGCTCATGGGGG
CGTCTTACACCTTTCCCCTCCTCCCAGAGCCTGCACTCGTCGAGGACCTC
TTCTCTCACGACAACTTCTTTCTAGACCTCCTGTACGTGCACGCCCGACA
GCCCTTCCTTCCTCCGCCTGGCCCTTCTCTTTCCTCTTCCCCCGCCATCA
CCAACCTTAAGAAATCAAAGGCCATGCCCATGCGAGAGGAGGATGACGAC
GTGACAGTCCTGGACTCGAGGCACGGAGACCCGGCTGTTCTCTCGCCTCC
GACCCCGCGCCGTCGCCTCAGCAGCGACATCTGGAAGGCGTGTTTAGAGC
TGCTTGCCGACCGGCATCCCATGCTGCCAGAGACAGGATATTTCTTCACG
GTCCCGTGCGTCCCCTCCCGTTCCTTCTGCAATCTCGTTCCTCGCTCACG
TGATTGA back to topprotein sequence of rna8393 >rna8393-protein ID=rna8393-protein|Name=rna8393|organism=Nannochloropsis gaditana|type=polypeptide|length=705bp
MAAGGCEGGGGRGRGEDQGPSSPSHLPLHRDSFRNGRFLCALFLRLEPEI
AACTKGLQELLCEEDTSHSFLPPSLPPSPPSSLVRARERLGCAFWLFRCR
TFPLIPLCYFERVEDVLLGDTTVLWSLLWELRNIYNLSSPLPPSLPPSSP
PCAPAGRSHSMKLPFEHAGNGTRAHGREPCEISREKDGATPYPPGGQRPA
PRAWAPGQGTEAEGVRSEKTANARKFWSGRCGVPAGGGQKAMGVRGASPT
RGQALTGGDSTEGGGESLGAQDGMPSKGAEGERPRWEEERARRQRTESGQ
GEGGGKGGGEEGNDAGESRGFPEDLYPHPYGPSPSCSPVPTLSSLRPHAF
SPDRVREAISFHGASAGEASSGERDGRLPRSIQTPRHDQGQPLWARPRHW
HQEHLHEEGAKTRHTILREGRARSDDHGRSAGRDRTPMGKTISMRVSPSL
SQEDASVSPSAPSAAASALSSSYSLSRGASVSGHALRPDRLPCPFLSESE
RRAAPSPALSPSFASPTLGYPPSSQDFDHSFPPEAFTRPLTDFSAPLLHA
QPILSPRLSEDEASLPCPARLGSAEAEDILGWLGAHGIVLQQPERLLLSS
SQQSDCPEFSDGLLLARLLGRLEGWGEEGVEGIDWSPGTAVVTRLQNLKR
VLDVWRRKRKGIPLHLLHREFDILEGRTDVLLPLLWHVRRVYDEGDGERP
TETGL back to topmRNA from alignment at KK037248.1:562378..565704+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8393 ID=rna8393|Name=rna8393|organism=Nannochloropsis gaditana|type=mRNA|length=3327bp|location=Sequence derived from alignment at KK037248.1:562378..565704+ (Nannochloropsis gaditana)
ATTACATTACAGTCGTCCGACTCACGAAAATTTGATCTGTCATGAACGCT
TAGCTAGGGAAAGACCTATCCGACGCGCCCATGAATGGACGGTGCAACCG
CGTTTTTCCGTAGTAAGAAAGGTCATGCtggcttttccctctctcttctc
ctccactggGTCAAtacgctccctccccgctcttGCCTCCTTATCAGCCA
GCCCGTGGACATTTACGACGGACGTGTCTTACGTGACATATTGGTGCAGT
GCTTCCTGCCGCCGCAGcatgaagggaaggatttgGGCGAGGCCCTACAT
CTCTTTCATGCCTGTTACCACGCGCAGGACCCTGCTTTGTTTGAATTCCT
TTACcagcaagaggaaggcgcgGTGACTAGTTCTGCGAAGCTTGGGGCAT
TGGTAGAGCGAATACGCGGCGGGGACAACGTGGAACTTGCCCGGCTGCTA
TCTGTGTTGCGGGTCTTGTGGGATCGGAAGAAGCTTGCAGAGACGGGGAA
ATCGAGGAACGAGCATCCCATGATGCCGGTGGAACGTGGacgcagaggaa
gaaaagggaaggcaaAAGGGTCCGGCTGGGATAGGGattgggaagaggag
aaggagcaggcgggcggggggaaaaacggggaagagggggaaagagagga
ggaaattgaaaaagagatggaagacgacggaatgacctcctcccagagcc
ccttcccctccaaaTGCCAAGCCTACCTTTCGCAGGCATCATTTCATCGA
CCAGGAAGCCTTTTctcagaagaggaggcaaagatAGACGTCCTCTCTCG
TGCCGGAAGTCCTCGGCACTCTACCTCCCTGACACCACCTCTGAAAGCAG
AGGATCGCTCATTTGCAACGGAAGACGTGGTGCCATGCCATAAAGCGGCG
TCGCCAGCATCCCATGGAGGCCCCGCGGCCCCCgtgccacccttccctca
tcacaaaggaagggaagaggttGTCTCACCCACCCGGGCCCTCAGCTTCC
GGGAACGTGTGCTAGTCCATGCCTGGCTGCAGGGGCTCGGCCTTCCCGTG
AATTTGCCCCCTGTACCGGCGCCACCGGTCCTGGATCGATGGCTGCCGGA
GgatgtgaaggagggggtggacgagggaggggggaggaccaggggcCGAG
CTCGCCGTCCCATCTACCTCTGCACCGGGATTCCTTCCGGAACGGTCGCT
TTCTCTGCGCCCTATTTCTTCGCCTCGAACCCGAAATTGCCGCGTGCACC
AAGGGTTTGCAGGAGCTCCTCTGCGAGGAAGACACCAGtcattctttcct
ccctccctcccttcctccctcccccccttcttccctcgtgCGTGCCCGGG
AGCGCCTGGGGTGTGCCTTTTGGCTCTTCCGCTGCCGTACTTTCCCCTTG
ATTCCTCTCTGCTATTTCGAACGCGTCGAAGACGTCCTTCTTGGCGATAC
GACTGTCCTGTGGTCCCTCCTGTGGGAGCTGAGGAACATCTACaaccttt
cttcccctctccctccttccctccctccgtcttccccgccctgcgCGCCG
GCTGGGCGGTCACACTCGATGAAATTGCCCTTCGAGCACGCAGGAAATGG
TACACGTGCACACGGAAGGGAGCCATGCGAAATCTCCCGGGAAAAGGATG
GGGCGACGCCCTATCCCCCGGGGGGTCAGCGCCCTGCACCCAGGGCGTGG
GCGCCGGGCCAAGGTAcggaggcagaaggagtACGGTCCGAGAAGACGGC
GAACGCAAGAAAATTCTGGAGTGGACGATGTGGGGTCCcagccggggggg
ggcaaaaggCGATGGGCGTGAGAGGGGCTTCGCCCACGCGCGGACAGGCC
TTGACAGGCGGTGATTcgacggaagggggaggggaaagcctcGGGGCGCA
GGATGGGATGCCATCaaagggggcggaaggggaacgTCCtcggtgggaag
aggagcgagctCGGCGCCAGCGTACGGAGTctgggcaaggggagggcggg
ggaaaggggggaggggaggaaggaaacgacgCGGGAGAAAGCAGGGGGTT
CCCGGAAGACTTATACCCGCACCCGTACGGCCCATCCCCGTCATGCTCCC
CCGTgcccaccctctcttcccttcgcccGCACGCCTTCTCTCCAGATCGG
GTACGAGAAGCTATCAGCTTTCACGGGGCAAGCGCCGGAGAAGCTTCgtc
gggagagagggatggaaggctGCCGCGGTCTATCCAGACTCCCCGCCATG
ACCAAGGGCAGCCACTATGGGCCCGTCCGCGTCATTGGCACCAAGAGCAT
TTacacgaggaaggggcaaagACACGACATACGATCttaagggagggacg
agcgCGTTCTGACGACCATGGGAGaagcgcagggagggaccggACGCCGA
TGGGAAAGACCATTTCCATGCGagtttctccctccctctcccaagaAGAT
GCCTCGGTATCCCCTTCTGCACCTTCGGCCGCGGCGTCTGCTCTCTCTTC
ATCCTATTCCTTATCTAGAGGAGCGAGCGTATCTGGACATGCCCTCCGGC
CTGACCGGCTCCCatgtccttttctctccgAATCCGAGCGCCGTGCtgcg
ccttctcccgccctctctccctccttcgccagcCCCACGCTTGgctaccc
tccttcctcgcagGATTTTgaccattccttccctccagagGCATTTACAC
GCCCTCTCACAGACTTTTcagcccctctcctccacgctcaaCCGATACTT
TCCCCCCGACTCTCAGAGGACgaggcttccctcccttgtccagCCCGTCT
TGGGAGCGCGGAGGCAGAAGATATCTTAGGCTGGCTTGGAGCCCATGGCA
TTGTGTTGCAGCAGCCTGAACGCTTGTTATTGTCCTCGTCTCAGCAGTCG
GATTGTCCGGAATTTTCCGACGGTCTGCTCTTGGCCCGCTTGCTCGGTCG
attggagggatggggggaggaaggggtggaggggatcgaCTGGTCACCTG
GCACCGCGGTGGTTACCCGGCTGCAGAACCTGAAAAGGGTGTTGGacgtg
tggaggaggaagaggaaaggaattCCCTTACACTTACTGCACCGGGAATT
CGACATCTTGGAAGGGCGGACGGATGTTTTGCTGCCGCTTTTGTGGCATG
TCCGCCGCGTTTATGATGAAGGTGATGGAGAAAGACCAACGGAAACTGGG
CTGTGAAGCATGCTGTCATGTTGAAATTCAAAATCAACTCTTGAAGAAAG
CACATCCATAAGAAAGATATCAGCACAGACTTGATAAAACGAAATTCAGA
GTGACTAGAAAGATCATAAGGCAAGAT back to topCoding sequence (CDS) from alignment at KK037248.1:562378..565704+ >rna8393 ID=rna8393|Name=rna8393|organism=Nannochloropsis gaditana|type=CDS|length=2118bp|location=Sequence derived from alignment at KK037248.1:562378..565704+ (Nannochloropsis gaditana)
ATGGCTGCCGGAGgatgtgaaggagggggtggacgagggaggggggagga
ccaggggcCGAGCTCGCCGTCCCATCTACCTCTGCACCGGGATTCCTTCC
GGAACGGTCGCTTTCTCTGCGCCCTATTTCTTCGCCTCGAACCCGAAATT
GCCGCGTGCACCAAGGGTTTGCAGGAGCTCCTCTGCGAGGAAGACACCAG
tcattctttcctccctccctcccttcctccctcccccccttcttccctcg
tgCGTGCCCGGGAGCGCCTGGGGTGTGCCTTTTGGCTCTTCCGCTGCCGT
ACTTTCCCCTTGATTCCTCTCTGCTATTTCGAACGCGTCGAAGACGTCCT
TCTTGGCGATACGACTGTCCTGTGGTCCCTCCTGTGGGAGCTGAGGAACA
TCTACaacctttcttcccctctccctccttccctccctccgtcttccccg
ccctgcgCGCCGGCTGGGCGGTCACACTCGATGAAATTGCCCTTCGAGCA
CGCAGGAAATGGTACACGTGCACACGGAAGGGAGCCATGCGAAATCTCCC
GGGAAAAGGATGGGGCGACGCCCTATCCCCCGGGGGGTCAGCGCCCTGCA
CCCAGGGCGTGGGCGCCGGGCCAAGGTAcggaggcagaaggagtACGGTC
CGAGAAGACGGCGAACGCAAGAAAATTCTGGAGTGGACGATGTGGGGTCC
cagccgggggggggcaaaaggCGATGGGCGTGAGAGGGGCTTCGCCCACG
CGCGGACAGGCCTTGACAGGCGGTGATTcgacggaagggggaggggaaag
cctcGGGGCGCAGGATGGGATGCCATCaaagggggcggaaggggaacgTC
CtcggtgggaagaggagcgagctCGGCGCCAGCGTACGGAGTctgggcaa
ggggagggcgggggaaaggggggaggggaggaaggaaacgacgCGGGAGA
AAGCAGGGGGTTCCCGGAAGACTTATACCCGCACCCGTACGGCCCATCCC
CGTCATGCTCCCCCGTgcccaccctctcttcccttcgcccGCACGCCTTC
TCTCCAGATCGGGTACGAGAAGCTATCAGCTTTCACGGGGCAAGCGCCGG
AGAAGCTTCgtcgggagagagggatggaaggctGCCGCGGTCTATCCAGA
CTCCCCGCCATGACCAAGGGCAGCCACTATGGGCCCGTCCGCGTCATTGG
CACCAAGAGCATTTacacgaggaaggggcaaagACACGACATACGATCtt
aagggagggacgagcgCGTTCTGACGACCATGGGAGaagcgcagggaggg
accggACGCCGATGGGAAAGACCATTTCCATGCGagtttctccctccctc
tcccaagaAGATGCCTCGGTATCCCCTTCTGCACCTTCGGCCGCGGCGTC
TGCTCTCTCTTCATCCTATTCCTTATCTAGAGGAGCGAGCGTATCTGGAC
ATGCCCTCCGGCCTGACCGGCTCCCatgtccttttctctccgAATCCGAG
CGCCGTGCtgcgccttctcccgccctctctccctccttcgccagcCCCAC
GCTTGgctaccctccttcctcgcagGATTTTgaccattccttccctccag
agGCATTTACACGCCCTCTCACAGACTTTTcagcccctctcctccacgct
caaCCGATACTTTCCCCCCGACTCTCAGAGGACgaggcttccctcccttg
tccagCCCGTCTTGGGAGCGCGGAGGCAGAAGATATCTTAGGCTGGCTTG
GAGCCCATGGCATTGTGTTGCAGCAGCCTGAACGCTTGTTATTGTCCTCG
TCTCAGCAGTCGGATTGTCCGGAATTTTCCGACGGTCTGCTCTTGGCCCG
CTTGCTCGGTCGattggagggatggggggaggaaggggtggaggggatcg
aCTGGTCACCTGGCACCGCGGTGGTTACCCGGCTGCAGAACCTGAAAAGG
GTGTTGGacgtgtggaggaggaagaggaaaggaattCCCTTACACTTACT
GCACCGGGAATTCGACATCTTGGAAGGGCGGACGGATGTTTTGCTGCCGC
TTTTGTGGCATGTCCGCCGCGTTTATGATGAAGGTGATGGAGAAAGACCA
ACGGAAACTGGGCTGTGA back to top
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