rna8390, rna8390 (mRNA) Nannochloropsis gaditana

Overview
Namerna8390
Unique Namerna8390
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length935
Alignment locationKK037248.1:555585..557012 -

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Properties
Property NameValue
Productu-box domain containing protein
Orig transcript idgnl|cribi|Naga_101755g1.7423.mrna
Orig protein idgnl|cribi|Naga_101755g1.7423
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:555585..557012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101755g1gene8130Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22310.1cds8363Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8390rna8390-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8390 ID=rna8390|Name=rna8390|organism=Nannochloropsis gaditana|type=mRNA|length=935bp
ATGGGCGCGGTGGGAGCCGGCGCCCGGGAAGTACTGGGGCGCGTTCGAAC
GTTGAGGAGAAGAGTGGAGGAGGAGGAGGGAGGGGAGGGGCGATGTGGGG
AGGCCGGCGCGGGACGGAGGAAAGGGAGGAAAGGCCGTCGGAGGATTGCG
TGCGTGAGGGAAGAGGAGGCGAGTGGCGAGGAGGGGGTGGAGGAGGGGGA
GGAAGGACAAGAGGGCGGAAGGGAAGAGGAGGGAGAGGGTGGGGGGGAGG
AAACTCTGGCCTTGGTTGAGGCGTTCGTGGCGCAGGGTGACTCGTTGACT
TCTGCGGTGACAAGTTGGGTGCACAGTGAGCGACAAAAGCGAGTGGGAGG
GAGAGGGGGAGGGCGAGGGCAGGTGGGCTGGTTGAAGCGCTGCCCTCCCT
CCCTGTGCGCCTTGGAGAAGGTACAAGGAGCGATCCGAACGTTGGGACTG
ACGGTTGGGGATATTTCGGTGTTTTTGGGTCCAGATTGGATACTCCCGAC
GGGCGGACTGAAAGAACGGAGGCGAGAGATAAACAAAGAGAGACAACGAT
TGAGAGGGCTGGTGGTTGCCCTCATGACACGGCAGGAGGAGCTAAGACAG
GAGGTGCGAAGACGGCAAGCGCGGAAAGCCACGGTGACTGACGAAGAGGT
AGAGGGCGAGGAGGAGGAGGAATTGTATGTGAGCATGGGGAAAATCCGAA
AGGGGGGCTGCAAACGGAAACGGCGACTGCGAAGCCGCAACCTGGTGGTC
GACCGTTGGTTAATGGATGAGGACGGGGATGACGCGTTTGCCGACTTGGA
GGATTTCATTATGCCTGATGAGTATACGTAAGGTCCTGTGTTTCACGACC
GTCCCACTCTAGTACAGGGGACGTGAGCGTTCGATCGTGGAAAGGAAAGT
ACAGATGAGGCGAAAGAAAAAGCACGTACATGGAG
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protein sequence of rna8390

>rna8390-protein ID=rna8390-protein|Name=rna8390|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTAT
PTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPT
ATPTTAPTPPTPAPTPLTTPPCFNKDARVIMADGSSKAVHALRKGDVVSV
DPNNDRLHAKVLSLVESVVEGDGNRPVRMCEMRPGFLLTPTHPLLVNGTR
WIRPEWEFACDTHEYPPTLFNIILEEGPHYSVNIEGFAVATYVKYPVGVP
MIDLPYKMQQYRVIEQDPGFAAGHVKVDAHRLIHLKTEWLKANKGLAMSE
ASISLQTTVSENSHMAEL
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mRNA from alignment at KK037248.1:555585..557012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8390 ID=rna8390|Name=rna8390|organism=Nannochloropsis gaditana|type=mRNA|length=1428bp|location=Sequence derived from alignment at KK037248.1:555585..557012- (Nannochloropsis gaditana)
GCTACTCCTACGGCTAGCCCGACCGCCAGCCCCACTGCCAGCCCTACGGC
TACCCCCACTGCTAGTCCTACGGGTACTCCTACGGCTACCCCCACTGCCA
GCCCTACGGCTACTCCCACGGCTGCCCCCACTGCCAGCCCTACGGCTACT
CCTACGGCTACCCCCACTGCAAACCCCACGGCTACTCCTACGGCTAGCCC
GACCGCCAGCCCCACTGCCAGCCCTACGGCTACCCCCACGGCAAGTCCCA
CTGGGAGCCCCACTGCTAGCCCTACCCCAAGTCCGACAGGGGCTCCCACG
GCTACTCCCACGACTGCCCCCACGCCTCCTACGCCTGCTCCCACGCCTCT
CACCACTCCTCCTTGTTTCAACAAGGATGCACGCGTCATCATGGCGGATG
GGTCTTCGAAGGCCGTTCATGCTCTTCGAAAAGGAGATGTTGTCTCGGTC
GATCCCAACAACGATCGTCTACACGCGAAAGTTCTCTCCCTTGTCGAATC
TGTCGTCGAAGGAGATGGCAATCGACCTGTTCGCATGTGCGAGATGCGGC
CCGGGTTTCTGCTTACACCCACGCACCCTCTGTTGGTAAATGGGACCCGT
TGGATTCGACCCGAGTGGGAGTTTGCCTGTGACACACACGAGTACCCTCC
GACATTGTTTAACATAATCTTGGAGGAGGGTCCGCACTACTCTGTCAATA
TCGAAGGCTTCGCCGTCGCCACATATGTGAAGTACCCTGTCGGGGTTCCT
ATGATCGATCTTCCGTACAAAATGCAGCAATACCGCGTCATAGAGCAAGA
TCCTGGCTTTGCGGCAGGGCACGTCAAGGTGGACGCTCACAGGCTCATTC
ATCTCAAGACGGAATGGTTGAAAGCTAATAAAGGTCTCGCAATGTCTGAG
GCGTCTATTTCACTGCAAACGACGGTGTCCGAGAACTCTCACATGGCGGA
GCTCTAAGGCTGTCTTCATCACAGCTGGGCTAGCCCCACTTCTCTTCTAG
TCCCACGGCTACTGCTACGGCAAGGTCCGCGCGCATACCCACCCACACAC
CCACCCACACACATACACATACAAACATACGCACACACACTCATACACAC
ATACATAGGCCCCCTTAACTATAGATATATTTCCTATTCAGATAAAGAGA
TGCACTTCTCCCCAAGAGACGTTTTCAAATCATTGAAGTCTCGTAGATAT
GCCAGTACGCACAAAGGATTCTCGTGCTTCCTGAAGTCTGTTTGACGTAG
AGAAAGAGGATGCACCAAGATCTTGTTCCCCCTGATATAAGTTAGATAGA
AGCATCTTGTTGTCATGGTGGCTGTTGAGCTTTCCTTAATTTATTTCGGA
GCAAGAACTTAATGAAAGTACATTTCCTTCTATACCGCCATAAGACGACA
CAAAAAAAGAATTGGATCGGTACATAAG
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Coding sequence (CDS) from alignment at KK037248.1:555585..557012-

>rna8390 ID=rna8390|Name=rna8390|organism=Nannochloropsis gaditana|type=CDS|length=957bp|location=Sequence derived from alignment at KK037248.1:555585..557012- (Nannochloropsis gaditana)
GCTACTCCTACGGCTAGCCCGACCGCCAGCCCCACTGCCAGCCCTACGGC
TACCCCCACTGCTAGTCCTACGGGTACTCCTACGGCTACCCCCACTGCCA
GCCCTACGGCTACTCCCACGGCTGCCCCCACTGCCAGCCCTACGGCTACT
CCTACGGCTACCCCCACTGCAAACCCCACGGCTACTCCTACGGCTAGCCC
GACCGCCAGCCCCACTGCCAGCCCTACGGCTACCCCCACGGCAAGTCCCA
CTGGGAGCCCCACTGCTAGCCCTACCCCAAGTCCGACAGGGGCTCCCACG
GCTACTCCCACGACTGCCCCCACGCCTCCTACGCCTGCTCCCACGCCTCT
CACCACTCCTCCTTGTTTCAACAAGGATGCACGCGTCATCATGGCGGATG
GGTCTTCGAAGGCCGTTCATGCTCTTCGAAAAGGAGATGTTGTCTCGGTC
GATCCCAACAACGATCGTCTACACGCGAAAGTTCTCTCCCTTGTCGAATC
TGTCGTCGAAGGAGATGGCAATCGACCTGTTCGCATGTGCGAGATGCGGC
CCGGGTTTCTGCTTACACCCACGCACCCTCTGTTGGTAAATGGGACCCGT
TGGATTCGACCCGAGTGGGAGTTTGCCTGTGACACACACGAGTACCCTCC
GACATTGTTTAACATAATCTTGGAGGAGGGTCCGCACTACTCTGTCAATA
TCGAAGGCTTCGCCGTCGCCACATATGTGAAGTACCCTGTCGGGGTTCCT
ATGATCGATCTTCCGTACAAAATGCAGCAATACCGCGTCATAGAGCAAGA
TCCTGGCTTTGCGGCAGGGCACGTCAAGGTGGACGCTCACAGGCTCATTC
ATCTCAAGACGGAATGGTTGAAAGCTAATAAAGGTCTCGCAATGTCTGAG
GCGTCTATTTCACTGCAAACGACGGTGTCCGAGAACTCTCACATGGCGGA
GCTCTAA
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Synonyms
Publications