EWM22310.1, cds8363 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22310.1
Unique Name	cds8363
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037248.1:556056..557012 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22310.1
Product	u-box domain containing protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_101755g1.7423.mrna
Gbkey	CDS
End range	.
End range	557012

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:556056..557012 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0019538	protein metabolic process
GO:0016539	intein-mediated protein splicing

Vocabulary: **INTERPRO**
Term	Definition
IPR006141	Intein_N
IPR028992	Hedgehog/Intein_dom

Homology

[Close]

BLAST of EWM22310.1 vs. NCBI_GenBank
Match: gi|585102800|gb|EWM22310.1| (u-box domain containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0

Query:    1 ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTPPCFNKDARVIMADGSSKAVHALRKGDVVSVDPNNDRLHAKVLSLVESVVEGDGNRPVRMCEMRPGFLLTPTHPLLVNGTRWIRPEWEFACDTHEYPPTLFNIILEEGPHYSVNIEGFAVATYVKYPVGVPMIDLPYKMQQYRVIEQDPGFAAGHVKVDAHRLIHLKTEWLKANKGLAMSEASISLQTTVSENSHMAEL 318
            ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTPPCFNKDARVIMADGSSKAVHALRKGDVVSVDPNNDRLHAKVLSLVESVVEGDGNRPVRMCEMRPGFLLTPTHPLLVNGTRWIRPEWEFACDTHEYPPTLFNIILEEGPHYSVNIEGFAVATYVKYPVGVPMIDLPYKMQQYRVIEQDPGFAAGHVKVDAHRLIHLKTEWLKANKGLAMSEASISLQTTVSENSHMAEL
Sbjct:    1 ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTPPCFNKDARVIMADGSSKAVHALRKGDVVSVDPNNDRLHAKVLSLVESVVEGDGNRPVRMCEMRPGFLLTPTHPLLVNGTRWIRPEWEFACDTHEYPPTLFNIILEEGPHYSVNIEGFAVATYVKYPVGVPMIDLPYKMQQYRVIEQDPGFAAGHVKVDAHRLIHLKTEWLKANKGLAMSEASISLQTTVSENSHMAEL 318

[Close]

BLAST of EWM22310.1 vs. NCBI_GenBank
Match: gi|585107419|gb|EWM25605.1| (hypothetical protein Naga_100543g1 [Nannochloropsis gaditana])

HSP 1 Score: 356.295 bits (913), Expect = 4.171e-115
Identity = 188/292 (64.38%), Postives = 225/292 (77.05%), Query Frame = 0

Query:    3 PTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTP-PTPAPTPLTTPPCFNKDARVIMADGSSKAVHALRKGDVVSVDPNNDRLHAKVLSLVESVVEGDGNRPVRMCEMRPGFLLTPTHPLLVNGTRWIRPEWEFACDTHEYPPTLFNIILEEGPHYSVNIEGFAVATYVKYPVGVPMIDLPYKMQQYRVIEQDPGFAAGHVKVDAHRLIHLKTEWLKAN 293
            PT +PTASPT SPTA PT SPT +PTA PTASPT +PTAAPT SPTA+PT  PTA+PT +PTA+PT SPTASPT  PTASPT SPTA+PT SPT +PTA P+ +PTP PT AP+   T  C+N +ARV+MADG  K V AL KGD+VSVDP    +HAKVLSLVE+ +E     P  MCE+ PGF L+  HP+ +NGTRWIRPEWEF C T +Y  +LFNIILEEG H++VNIEGFAVAT+VKYPVGVPMID PYK++ YR++E  P F+AG VK+D   ++ LK  WL+AN
Sbjct:  360 PTDNPTASPTLSPTAAPTLSPTASPTAVPTASPTPSPTAAPTLSPTASPTTAPTASPTPSPTAAPTLSPTASPTTAPTASPTPSPTAAPTLSPTASPTAAPSASPTPSPTAAPSMAPTIICYNGEARVVMADGQYKPVIALHKGDLVSVDPLRPHVHAKVLSLVEAPIEEGRGSP--MCELAPGFFLSNLHPIRMNGTRWIRPEWEFHCSTRKYFSSLFNIILEEGVHHTVNIEGFAVATWVKYPVGVPMIDRPYKLEMYRLVEASPNFSAGLVKIDTKEMLKLKMAWLEAN 649

[Close]

BLAST of EWM22310.1 vs. NCBI_GenBank
Match: gi|740799554|ref|WP_038584837.1| (hypothetical protein [Paenibacillus sp. FSL H7-0357])

HSP 1 Score: 129.798 bits (325), Expect = 1.161e-29
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 0

Query:    1 ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPT 104
            A PTA+PTA PTA+PTA PTA+PT  PTATPTA PTATPTA PTA+PTA P ATPT  PTATPT  PTA+PTA PTATPTA PT +PTA PT +PT  PTATPT
Sbjct: 1492 AEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPIATPTVEPTATPTVEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPTATPT 1595

HSP 2 Score: 127.872 bits (320), Expect = 4.868e-29
Identity = 79/108 (73.15%), Postives = 85/108 (78.70%), Query Frame = 0

Query:    1 ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPT 108
            ATPT  PTA PTA+PTA PTA+PT  PTATPTA PTATPTA PTA+PTA PTATPTA P ATPT  PTA+PT  PTATPTA PT +PTA PT +PT  PTATPT  PT
Sbjct: 1486 ATPT--PTAEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPIATPTVEPTATPTVEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPT 1591

HSP 3 Score: 121.709 bits (304), Expect = 5.948e-27
Identity = 79/116 (68.10%), Postives = 85/116 (73.28%), Query Frame = 0

Query:    5 ASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTP 120
            A P A+PT  PTA PTA+PT  PTATPTA PTATPTA PTA+PTA PTATPTA PTATPTA P A+PT  PTATPT  PT +PTA PT +PT  PTATPT  PT  TP   P  TP
Sbjct: 1482 AQPVATPT--PTAEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPTATPTAEPIATPTVEPTATPTVEPTATPTAEPTATPTAEPTATPTAEPT-ATPTAEPTATP 1594

[Close]

BLAST of EWM22310.1 vs. NCBI_GenBank
Match: gi|1124996980|gb|OKZ65406.1| (hypothetical protein BHW05_02855 [Clostridium sp. 42_12])

HSP 1 Score: 120.939 bits (302), Expect = 4.543e-27
Identity = 81/120 (67.50%), Postives = 88/120 (73.33%), Query Frame = 0

Query:    1 ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTP 120
            A PTA+PTA PTA+PTA PTA+PT  PTATPTA PTATPT  PTA+PT  PTATPT  PTATPTA PTA+PT  PTATPT  PT +PT  PT +PT  PTATPT  PT  TP   P  TP
Sbjct:   85 AKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPT-ATPTVKPTATP 203

HSP 2 Score: 118.627 bits (296), Expect = 3.031e-26
Identity = 82/124 (66.13%), Postives = 87/124 (70.16%), Query Frame = 0

Query:    1 ATPTASPTASPTASPTATPTASPTGTPT----ATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTP 120
            ATPTA PTA+PT  PTATPTA PT TPT    ATPT  PTATPT  PTA+PTA PTATPT  PTATPT  PTA+PT  PTATPT  PT +PT  PT +PT  PTATPT  PT  TP   P  TP
Sbjct:   97 ATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPT-ATPTAKPTATP 219

HSP 3 Score: 115.161 bits (287), Expect = 5.010e-25
Identity = 79/121 (65.29%), Postives = 88/121 (72.73%), Query Frame = 0

Query:    2 TPTASP--TASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTP 120
            TP+A+P  +A PTA+PTA PTA+PT  PTATPT  PTATPTA PTA+PT  PTATPT  PTATPT  PTA+PTA PTATPT  PT +PT  PT +PT  PTATPT  PT  TP   P  TP
Sbjct:   76 TPSAAPQPSAKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPT-ATPTVKPTATP 195

HSP 4 Score: 113.235 bits (282), Expect = 2.189e-24
Identity = 73/108 (67.59%), Postives = 79/108 (73.15%), Query Frame = 0

Query:    1 ATPTASPTASPTASPTATPTASPTGT----PTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPT 104
            ATPTA PTA+PT  PTATPT  PT T    PTATPTA PTATPT  PTA+PT  PTATPT  PTATPT  PTA+PT  PTATPT  PT +PT  PT +PT  PTATP+
Sbjct:  113 ATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPS 220

HSP 5 Score: 108.997 bits (271), Expect = 6.612e-23
Identity = 76/122 (62.30%), Postives = 87/122 (71.31%), Query Frame = 0

Query:    1 ATPTASPTASPTAS--PTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTP 120
            A+P  +P  +P+A+  P+A PTA+PT  PTATPTA PTATPT  PTA+PTA PTATPT  PTATPT  PTA+PT  PTATPTA PT +PT  PT +PT  PTATPT  PT  TP   P  TP
Sbjct:   67 ASPIVTPAPTPSAAPQPSAKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPT-ATPTVKPTATP 187

HSP 6 Score: 106.686 bits (265), Expect = 4.304e-22
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 0

Query:    3 PTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTG 97
            PTA+PT  PTA+PT  PTA+PT  PTATPT  PTATPT  PTA+PT  PTATPT  PTATPT  PTA+PT  PTATPT  PT +PTA PT +P+G
Sbjct:  127 PTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPSG 221

HSP 7 Score: 103.99 bits (258), Expect = 3.466e-21
Identity = 73/117 (62.39%), Postives = 82/117 (70.09%), Query Frame = 0

Query:    4 TASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTP 120
            +ASP  +P  +P+A P   P+  PTATPTA PTATPTA PTA+PT  PTATPTA PTATPT  PTA+PT  PTATPT  PT +PTA PT +PT  PTATPT  PT  TP   P  TP
Sbjct:   66 SASPIVTPAPTPSAAP--QPSAKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPT-ATPTVKPTATP 179

HSP 8 Score: 98.5969 bits (244), Expect = 2.726e-19
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 0

Query:    3 PTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTAS 90
            PTA+PT  PTA+PTA PTA+PT  PTATPT  PTATPT  PTA+PT  PTATPT  PTATPT  PTA+PT  PTATPTA PT +P+ +
Sbjct:  135 PTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPSGN 222

HSP 9 Score: 82.0333 bits (201), Expect = 1.099e-13
Identity = 70/136 (51.47%), Postives = 82/136 (60.29%), Query Frame = 0

Query:    7 PTASPTASPTATPTASP----------------TGTPTATPTASPTATPTAA------PTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPTPPTPAPTPLTTP 120
            P+ASP  +P  TP+A+P                T  P+A+P  +P  TP+AA      PTA+PTA PTATPTA PTATPT  PTA+PTA PTATPT  PT +PT  PT +PT  PTATPT  PT  TP   P  TP
Sbjct:   29 PSASPIVTPEPTPSAAPQPSATPTATPTPTPTQTAKPSASPIVTPAPTPSAAPQPSAKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPT-ATPTVKPTATP 163

HSP 10 Score: 60.8474 bits (146), Expect = 9.860e-7
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 0

Query:    1 ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTAN 58
            ATPT  PTA+PT  PTATPT  PT TPT  PTA+PT  PTA PTA PTATP+     N
Sbjct:  169 ATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPSGNAGQN 226

[Close]

BLAST of EWM22310.1 vs. NCBI_GenBank
Match: gi|585104552|gb|EWM23483.1| (putative lipase, partial [Nannochloropsis gaditana])

HSP 1 Score: 103.99 bits (258), Expect = 2.895e-21
Identity = 66/89 (74.16%), Postives = 72/89 (80.90%), Query Frame = 0

Query:    1 ATPTASPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTA 89
            ++PT+ PTA PT  PT TPTASPTG PTA+PT  PTAT TAAPT SPTA PTATPTA PT TPTA PTA+PT SPTATPTA PT +PTA
Sbjct:  295 SSPTSFPTAMPTKLPTGTPTASPTGKPTASPTGMPTATLTAAPTVSPTAIPTATPTAMPTVTPTAMPTATPTMSPTATPTAMPTATPTA 383

HSP 2 Score: 94.7449 bits (234), Expect = 4.889e-18
Identity = 61/90 (67.78%), Postives = 69/90 (76.67%), Query Frame = 0

Query:   12 TASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTA 101
            T+SPT+ PTA PT  PT TPTASPT  PTA+PT  PTAT TA PT +PTA PTA+PTA PT +PTA PTA+PT SPTA+PT  PT  PTA
Sbjct:  294 TSSPTSFPTAMPTKLPTGTPTASPTGKPTASPTGMPTATLTAAPTVSPTAIPTATPTAMPTVTPTAMPTATPTMSPTATPTAMPTATPTA 383

HSP 3 Score: 80.1073 bits (196), Expect = 3.890e-13
Identity = 60/101 (59.41%), Postives = 67/101 (66.34%), Query Frame = 0

Query:    8 TASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASPTASPTASPTATPTASPTGSPTASPTPSPTGAPTATPTTAPT 108
            T+SPT+ PTA PT  PTGTPTA+PT  PTA+PT  PTA+ TA PT +PTA PTATPTA PT +PTA PTATPT SP                TATPT  PT
Sbjct:  294 TSSPTSFPTAMPTKLPTGTPTASPTGKPTASPTGMPTATLTAAPTVSPTAIPTATPTAMPTVTPTAMPTATPTMSP----------------TATPTAMPT 378

[Close]

BLAST of EWM22310.1 vs. NCBI_GenBank
Match: gi|585100148|gb|EWM20486.1| (hypothetical protein Naga_100452g2 [Nannochloropsis gaditana])

HSP 1 Score: 60.077 bits (144), Expect = 8.794e-8
Identity = 63/115 (54.78%), Postives = 69/115 (60.00%), Query Frame = 0

Query:    6 SPTASPTASPTATPTASPTGTPTATPTASPTATPTAAPTASPTATPTATPTANPTATPTASP--------TASPTASPTATPTAS------------PTGSPTASPTPSPTGAPT 100
            +P A PTA PT TPT +P   PTA PTA+PT TP A PTA PT TPTA PTA PT TPTA P        TA PTA+PT TPTA             PT +PT +PT  PT APT
Sbjct:    2 TPAARPTAEPTVTPTMTPAARPTAEPTATPTMTPAAQPTAGPTMTPTAEPTAGPTMTPTAQPTATPTMTPTAEPTAAPTMTPTAQPTATPTMTPTAEPTAAPTMTPTAQPTAAPT 116

The following BLAST results are available for this feature:

BLAST of EWM22310.1 vs. NCBI_GenBank

BLAST of EWM22310.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6


Match Name	E-value	Identity	Description
gi\|585102800\|gb\|EWM22310.1\|	0.000e+0	100.00	u-box domain containing protein, partial [Nannochl...	[more]
gi\|585107419\|gb\|EWM25605.1\|	4.171e-115	64.38	hypothetical protein Naga_100543g1 [Nannochloropsi...	[more]
gi\|740799554\|ref\|WP_038584837.1\|	1.161e-29	74.04	hypothetical protein [Paenibacillus sp. FSL H7-035...	[more]
gi\|1124996980\|gb\|OKZ65406.1\|	4.543e-27	67.50	hypothetical protein BHW05_02855 [Clostridium sp. ...	[more]
gi\|585104552\|gb\|EWM23483.1\|	2.895e-21	74.16	putative lipase, partial [Nannochloropsis gaditana...	[more]
gi\|585100148\|gb\|EWM20486.1\|	8.794e-8	54.78	hypothetical protein Naga_100452g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8390	rna8390	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications