rna8387, rna8387 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8387
Unique Name	rna8387
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	370
Alignment location	KK037248.1:545614..548055 -

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Properties


Property Name	Value
Product	polyribonucleotide nucleotidyltransferase
Orig transcript id	gnl\|cribi\|Naga_101073g1.6903.mrna
Orig protein id	gnl\|cribi\|Naga_101073g1.6903
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:545614..548055 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101073g1	gene8127	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8387	rna8387-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22313.1	cds8360	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:545614..548055-
coding sequence from alignment at KK037248.1:545614..548055-

mRNA sequence

>rna8387 ID=rna8387|Name=rna8387|organism=Nannochloropsis gaditana|type=mRNA|length=370bp
TCCCTCCCTTTCCCCCTCTCCCGTTCACAGATTCGCGCCATCATCGACCA
GTTCTCCCTCTCGGAGCTGGACGTCTCCGACCAGGGCGTCGTGTCTGTCT
GCTCCTTCTCCACCGAGAGCAACCAGGCGGCGGCCAAATTCATCGAGGAC
ATGTACAAAGACGAGGTGAAGGCCTCCAACACCGTGGAGTTCAAAGGTCC
GATGCCGGAGGTCGGCACCGTATTCCGGGACGTGGAGATCAAGGGTACGC
CTTCCCTCCCTCTGTCCCTCCCTCTGGCCCTCTGTCCCTCCCTCCCTCCC
TCCCTCCCTGATCCCGCAATCCGCCTTGACTGAAACCTTCTCACGTTTAG
GCAATCCCCTCCCGTCCTCC

protein sequence of rna8387

>rna8387-protein ID=rna8387-protein|Name=rna8387|organism=Nannochloropsis gaditana|type=polypeptide|length=677bp
MPPPLFFLIVVATLSCHSPWSRYGHVQAFLSPHPRSRGTPEFRAVERRTP
DASPLSLSAHTLSTSTSGGPTGTFFTEEKMEVEVGGKILAFETGKIGRSA
DGSVTVRQGETVVYASACAENKPQELDFTPLRIDYFERFSAAGMTSGSYT
KRDGRASDREILVARLIDRPLRPMLTEAWTCETQVLSWVFSYDGVHNSEP
MAICAASAAVVLSSIPLETPVAGVQVGRVDGRLVVNPTKQEMANSTLNLM
VAGTEEGILMIEGAAEFLPEEVLLDALREGHAAIADICRALREWGAKVGK
PKRLGDLCLAPPELKPLLQERYAKAIDAALKSGNRNAYSASLHGIEDSIV
ASLGVDSGLPDGEFLARDLKVEFKKLVKQRMALMVAAGRGRADGRGPSEV
RPISIEMGVLPTPHGSVLFTRGETQALVTVTLGNKGMSQRTESLDGSDSK
RFYLQYSFPPSSVGEVGRVGAPGRREIGHGNLAERALLPVIPSEEDFPYA
LRVESMIMESCGSSSMASACGGSLALMDCGVPLKRHIAGVAMGLLLDEAV
DEPIVLTDILGLEDAFGTMDFKICGDAEGVTTFQLDIKCNGLTFPTLEKA
LRQAKEGRLHILKIMEEACPAPRAEMRGNVMRISQVKINPSFIGKLIGPQ
GRQVGRGGRRAGGRAGGKRRPLRCLVK

mRNA from alignment at KK037248.1:545614..548055-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8387 ID=rna8387|Name=rna8387|organism=Nannochloropsis gaditana|type=mRNA|length=2442bp|location=Sequence derived from alignment at KK037248.1:545614..548055- (Nannochloropsis gaditana)
CTTGCCCAGGTTTGACTCACCTCAGGGACACGCGGCCACCACGTCCCGTA
CACAAGTGCGTGCGTGGAGGACCTCGAGTCTGCACTTTGTCATGCCGCCG
CCCCTCTTCTTCCTAATTGTCGTGGCCACACTGTCCTGCCACAGCCCTTG
GAGCAGATATGGACATGTACAGGCATTTTTATCCCCCCATCCCCGATCCA
GAGGCACGCCAGAGTTTCGTGCCGTTGAGCGACGCACACCAGACGGTAAG
TGTTCAGGATCCAAACCCGCGTGACCTGGCCACTTTCTTGATTCCTCCCT
GTCGACACTATTATTATTGCCTGGCCTACATAACCACGCGCGCAACGTTG
CAAACGACGATCATCACCGGTGTCGGTCCCTAACTGTCTCTCACTCCGTG
CTCCTCTTCCACCTCTTGAGGCCCTAACCTCCCTGATAGCAGGCCGTATG
CAAACGGCTTTCACTACATCTCGTCGAACTAACCCCTCTGTCCCTCCCGC
CATCCTCCTCGCTCATCTTCCCCCCCCCCTTCTTCTCCCTCCCCCCATCC
CGGACGGCACAGCCTCCCCACTCTCCCTCTCCGCCCACACCCTGTCCACG
TCCACGTCCGGGGGCCCGACCGGCACATTTTTCACGGAGGAGAAGATGGA
GGTGGAAGTCGGTGGCAAGATCCTGGCCTTTGAGACGGGGAAAATCGGGC
GAAGCGCGGACGGCTCGGTCACGGTCCGTCAAGGCGAGACGGTCGTCTAT
GCCTCAGCCTGTGCCGAGAACAAGCCCCAGGAGCTCGATTTCACCCCGCT
CCGGATCGATTACTTCGAACGTTTCTCCGCGGCCGGCATGACGAGCGGGT
CCTACACGAAGCGGGACGGGCGGGCCTCGGACCGGGAGATCCTGGTCGCC
CGCTTGATCGACCGACCGTTACGGCCCATGCTCACGGAGGCTTGGACGTG
CGAAACTCAGGTCTTGTCCTGGGTGTTCAGCTACGACGGGGTCCACAACA
GCGAGCCCATGGCCATTTGTGCGGCCTCCGCCGCGGTTGTCCTCTCCTCC
ATCCCCCTGGAAACGCCCGTGGCCGGGGTGCAGGTCGGGAGGGTGGACGG
CCGCCTGGTCGTGAACCCGACCAAGCAGGAGATGGCGAACAGCACCTTGA
ACCTGATGGTGGCGGGCACGGAGGAAGGAATTTTGATGATCGAAGGGGCC
GCCGAGTTTTTGCCCGAGGAGGTGCTCTTGGACGCGTTGCGGGAAGGCCA
TGCCGCCATTGCCGATATTTGCCGAGCCTTGCGGGAATGGGGCGCCAAGG
TGGGGAAGCCGAAACGGCTTGGGGATTTGTGCCTGGCACCCCCCGAGTTG
AAGCCGTTGCTCCAAGAAAGATACGCAAAGGCCATCGACGCCGCCTTGAA
GAGCGGGAACCGAAACGCCTACTCCGCCTCCCTCCACGGCATCGAGGACA
GCATCGTCGCCAGCCTAGGCGTGGACAGCGGGCTACCGGACGGAGAATTC
CTGGCCCGGGACCTGAAAGTCGAGTTCAAGAAACTGGTGAAACAGCGCAT
GGCTCTGATGGTGGCCGCGGGGCGGGGGCGGGCGGACGGGCGGGGGCCCT
CCGAGGTCCGGCCCATATCGATCGAGATGGGCGTGTTGCCCACCCCGCAC
GGGAGTGTCCTTTTCACCCGGGGTGAGACCCAGGCCCTGGTCACCGTCAC
CTTGGGGAACAAGGGGATGAGCCAACGCACGGAAAGCTTGGACGGGAGCG
ATTCCAAACGCTTTTATTTGCAGTATTCCTTCCCGCCCTCCTCGGTCGGG
GAGGTGGGACGGGTTGGGGCCCCCGGGCGCCGGGAGATCGGCCACGGAAA
TTTGGCGGAACGCGCCCTCTTACCGGTCATCCCCTCCGAGGAAGATTTTC
CGTACGCCCTGCGGGTGGAAAGCATGATCATGGAAAGCTGCGGGTCCTCG
TCGATGGCCTCCGCCTGCGGGGGCAGCTTGGCCTTGATGGACTGTGGGGT
GCCTCTGAAGCGGCACATCGCGGGTGTGGCCATGGGCCTGCTCTTGGACG
AGGCAGTGGACGAACCCATCGTGCTGACGGATATCTTGGGCTTGGAGGAT
GCTTTCGGGACTATGGACTTCAAGATTTGCGGGGACGCGGAGGGGGTGAC
CACCTTCCAGTTGGACATAAAATGCAACGGGCTGACCTTTCCGACCCTGG
AGAAGGCCTTGCGTCAGGCGAAGGAGGGGCGCTTGCACATTTTGAAAATC
ATGGAAGAAGCCTGCCCCGCCCCCCGGGCGGAGATGCGGGGGAATGTGAT
GCGAATATCTCAGGTGAAGATCAACCCCTCCTTCATCGGGAAGCTGATCG
GACCACAGGGGCGCCAGGTAGGGAGGGGGGGACGGAGGGCGGGAGGGAGG
GCGGGAGGGAAGCGACGTCCGTTAAGGTGTCTGGTAAAGTGA

Coding sequence (CDS) from alignment at KK037248.1:545614..548055-

>rna8387 ID=rna8387|Name=rna8387|organism=Nannochloropsis gaditana|type=CDS|length=4068bp|location=Sequence derived from alignment at KK037248.1:545614..548055- (Nannochloropsis gaditana)
CCTCCCCACTCTCCCTCTCCGCCCACACCCTGTCCACGTCCACGTCCGGG
GGCCCGACCGGCACATTTTTCACGGAGGAGAAGATGGAGGTGGAAGTCGG
TGGCAAGATCCTGGCCTTTGAGACGGGGAAAATCGGGCGAAGCGCGGACG
GCTCGGTCACGGTCCGTCAAGGCGAGACGGTCGTCTATGCCTCAGCCTGT
GCCGAGAACAAGCCCCAGGAGCTCGATTTCACCCCGCTCCGGATCGATTA
CTTCGAACGTTTCTCCGCGGCCGGCATGACGAGCGGGTCCTACACGAAGC
GGGACGGGCGGGCCTCGGACCGGGAGATCCTGGTCGCCCGCTTGATCGAC
CGACCGTTACGGCCCATGCTCACGGAGGCTTGGACGTGCGAAACTCAGGT
CTTGTCCTGGGTGTTCAGCTACGACGGGGTCCACAACAGCGAGCCCATGG
CCATTTGTGCGGCCTCCGCCGCGGTTGTCCTCTCCTCCATCCCCCTGGAA
ACGCCCGTGGCCGGGGTGCAGGTCGGGAGGGTGGACGGCCGCCTGGTCGT
GAACCCGACCAAGCAGGAGATGGCGAACAGCACCTTGAACCTGATGGTGG
CGGGCACGGAGGAAGGAATTTTGATGATCGAAGGGGCCGCCGAGTTTTTG
CCCGAGGAGGTGCTCTTGGACGCGTTGCGGGAAGGCCATGCCGCCATTGC
CGATATTTGCCGAGCCTTGCGGGAATGGGGCGCCAAGGTGGGGAAGCCGA
AACGGCTTGGGGATTTGTGCCTGGCACCCCCCGAGTTGAAGCCGTTGCTC
CAAGAAAGATACGCAAAGGCCATCGACGCCGCCTTGAAGAGCGGGAACCG
AAACGCCTACTCCGCCTCCCTCCACGGCATCGAGGACAGCATCGTCGCCA
GCCTAGGCGTGGACAGCGGGCTACCGGACGGAGAATTCCTGGCCCGGGAC
CTGAAAGTCGAGTTCAAGAAACTGGTGAAACAGCGCATGGCTCTGATGGT
GGCCGCGGGGCGGGGGCGGGCGGACGGGCGGGGGCCCTCCGAGGTCCGGC
CCATATCGATCGAGATGGGCGTGTTGCCCACCCCGCACGGGAGTGTCCTT
TTCACCCGGGGTGAGACCCAGGCCCTGGTCACCGTCACCTTGGGGAACAA
GGGGATGAGCCAACGCACGGAAAGCTTGGACGGGAGCGATTCCAAACGCT
TTTATTTGCAGTATTCCTTCCCGCCCTCCTCGGTCGGGGAGGTGGGACGG
GTTGGGGCCCCCGGGCGCCGGGAGATCGGCCACGGAAATTTGGCGGAACG
CGCCCTCTTACCGGTCATCCCCTCCGAGGAAGATTTTCCGTACGCCCTGC
GGGTGGAAAGCATGATCATGGAAAGCTGCGGGTCCTCGTCGATGGCCTCC
GCCTGCGGGGGCAGCTTGGCCTTGATGGACTGTGGGGTGCCTCTGAAGCG
GCACATCGCGGGTGTGGCCATGGGCCTGCTCTTGGACGAGGCAGTGGACG
AACCCATCGTGCTGACGGATATCTTGGGCTTGGAGGATGCTTTCGGGACT
ATGGACTTCAAGATTTGCGGGGACGCGGAGGGGGTGACCACCTTCCAGTT
GGACATAAAATGCAACGGGCTGACCTTTCCGACCCTGGAGAAGGCCTTGC
GTCAGGCGAAGGAGGGGCGCTTGCACATTTTGAAAATCATGGAAGAAGCC
TGCCCCGCCCCCCGGGCGGAGATGCGGGGGAATGTGATGCGAATATCTCA
GGTGAAGATCAACCCCTCCTTCATCGGGAAGCTGATCGGACCACAGGGGC
GCCAGGTAGGGAGGGGGGGACGGAGGGCGGGAGGGAGGGCGGGAGGGAAG
CGACGTCCGTTAAGGTGTCTGGTAAAGTGAATGCCGCCGCCCCTCTTCTT
CCTAATTGTCGTGGCCACACTGTCCTGCCACAGCCCTTGGAGCAGATATG
GACATGTACAGGCATTTTTATCCCCCCATCCCCGATCCAGAGGCACGCCA
GAGTTTCGTGCCGTTGAGCGACGCACACCAGACGCCTCCCCACTCTCCCT
CTCCGCCCACACCCTGTCCACGTCCACGTCCGGGGGCCCGACCGGCACAT
TTTTCACGGAGGAGAAGATGGAGGTGGAAGTCGGTGGCAAGATCCTGGCC
TTTGAGACGGGGAAAATCGGGCGAAGCGCGGACGGCTCGGTCACGGTCCG
TCAAGGCGAGACGGTCGTCTATGCCTCAGCCTGTGCCGAGAACAAGCCCC
AGGAGCTCGATTTCACCCCGCTCCGGATCGATTACTTCGAACGTTTCTCC
GCGGCCGGCATGACGAGCGGGTCCTACACGAAGCGGGACGGGCGGGCCTC
GGACCGGGAGATCCTGGTCGCCCGCTTGATCGACCGACCGTTACGGCCCA
TGCTCACGGAGGCTTGGACGTGCGAAACTCAGGTCTTGTCCTGGGTGTTC
AGCTACGACGGGGTCCACAACAGCGAGCCCATGGCCATTTGTGCGGCCTC
CGCCGCGGTTGTCCTCTCCTCCATCCCCCTGGAAACGCCCGTGGCCGGGG
TGCAGGTCGGGAGGGTGGACGGCCGCCTGGTCGTGAACCCGACCAAGCAG
GAGATGGCGAACAGCACCTTGAACCTGATGGTGGCGGGCACGGAGGAAGG
AATTTTGATGATCGAAGGGGCCGCCGAGTTTTTGCCCGAGGAGGTGCTCT
TGGACGCGTTGCGGGAAGGCCATGCCGCCATTGCCGATATTTGCCGAGCC
TTGCGGGAATGGGGCGCCAAGGTGGGGAAGCCGAAACGGCTTGGGGATTT
GTGCCTGGCACCCCCCGAGTTGAAGCCGTTGCTCCAAGAAAGATACGCAA
AGGCCATCGACGCCGCCTTGAAGAGCGGGAACCGAAACGCCTACTCCGCC
TCCCTCCACGGCATCGAGGACAGCATCGTCGCCAGCCTAGGCGTGGACAG
CGGGCTACCGGACGGAGAATTCCTGGCCCGGGACCTGAAAGTCGAGTTCA
AGAAACTGGTGAAACAGCGCATGGCTCTGATGGTGGCCGCGGGGCGGGGG
CGGGCGGACGGGCGGGGGCCCTCCGAGGTCCGGCCCATATCGATCGAGAT
GGGCGTGTTGCCCACCCCGCACGGGAGTGTCCTTTTCACCCGGGGTGAGA
CCCAGGCCCTGGTCACCGTCACCTTGGGGAACAAGGGGATGAGCCAACGC
ACGGAAAGCTTGGACGGGAGCGATTCCAAACGCTTTTATTTGCAGTATTC
CTTCCCGCCCTCCTCGGTCGGGGAGGTGGGACGGGTTGGGGCCCCCGGGC
GCCGGGAGATCGGCCACGGAAATTTGGCGGAACGCGCCCTCTTACCGGTC
ATCCCCTCCGAGGAAGATTTTCCGTACGCCCTGCGGGTGGAAAGCATGAT
CATGGAAAGCTGCGGGTCCTCGTCGATGGCCTCCGCCTGCGGGGGCAGCT
TGGCCTTGATGGACTGTGGGGTGCCTCTGAAGCGGCACATCGCGGGTGTG
GCCATGGGCCTGCTCTTGGACGAGGCAGTGGACGAACCCATCGTGCTGAC
GGATATCTTGGGCTTGGAGGATGCTTTCGGGACTATGGACTTCAAGATTT
GCGGGGACGCGGAGGGGGTGACCACCTTCCAGTTGGACATAAAATGCAAC
GGGCTGACCTTTCCGACCCTGGAGAAGGCCTTGCGTCAGGCGAAGGAGGG
GCGCTTGCACATTTTGAAAATCATGGAAGAAGCCTGCCCCGCCCCCCGGG
CGGAGATGCGGGGGAATGTGATGCGAATATCTCAGGTGAAGATCAACCCC
TCCTTCATCGGGAAGCTGATCGGACCACAGGGGCGCCAGGTAGGGAGGGG
GGGACGGAGGGCGGGAGGGAGGGCGGGAGGGAAGCGACGTCCGTTAAGGT
GTCTGGTAAAGTGAATGCCGCCGCCCCTCTTCTTCCTAATTGTCGTGGCC
ACACTGTCCTGCCACAGCCCTTGGAGCAGATATGGACATGTACAGGCATT
TTTATCCCCCCATCCCCGATCCAGAGGCACGCCAGAGTTTCGTGCCGTTG
AGCGACGCACACCAGACG

Synonyms

Publications