|
|
Properties
| Property Name | Value |
|---|
| Product | putative zinc ring finger protein |
| Orig transcript id | gnl|cribi|Naga_100118g15.2752.mrna |
| Orig protein id | gnl|cribi|Naga_100118g15.2752 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:526922..529992 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8378 ID=rna8378|Name=rna8378|organism=Nannochloropsis gaditana|type=mRNA|length=989bp
CACAGGAGTGCTCCTTTCGTGTATAGCTAGCTTCATAAAGGCATTCCAAT
CGCAGAAATGGCACCAACGAAGCTCGGCGCGAAGGGGAGGAAAGGGAGCA
AGAAGAACCAGGTCAAGTTCACGATCGACTGCAGCGACCCGGTGAAAGAC
GGGGTCTTAGACATGGCCAACTTCGAGAAATTCCTCAAGGACCGAATCAA
GGTCAATGGCAAGGCCGGCGTGCTCGGAGACGCCGTGGCGGTCGCGCGGG
AGAAGAGCAAGATCCAAGTCACTGCCGAACTGCCCTTCTCAAAGCGGTAC
TTAAAGTACCTGACCAAGAAGCACCTGAAGAAGCAGCAACTCCGCGACTA
CATGCGTGTGGTGGCGACGAACAAGCAAACCTTCGAGTTGAAGTACTACA
CAGTCACGGACGAGGGGGGTGAGGACGAGGAGTAAGGAGAAGGAGGGGGG
CGAAGGGCGGGGAGAGGAGGTGGGCTGGTGATGCGGTCGAGGGGGGCGAA
TGCTGCTCGGTATCTGTCTCTTCGCACGGCTCGCGGCGGTGGCGGGAGAG
AAGAGGATTGAAACAGAGGCAAAGCAACCAAGCACGGCCTCGGCTTTACT
GTCTGCCCGAAGTTTCTTTTTTAAAGCGGAAATGTCCTAGGCTCTCCTGC
AACCACACAGGGACGTGGAGGGCGGGAGACCGTGACAGGATAGGACGGTG
CCTGAGACTTCTCGAGAGGACGCAGGGCATGGCGAAGGTTCTCAAGCCCT
TCCTCGCTCCGCAGAACATGCTTGTGCGTACCAGACCCCATTCCCTCATC
CCACCGCGTCGTACACCACGGCCCTTGTTCAAGCATTTCTTTAGCAAGCC
ACCGCACTCGGAGACGCAGGGAGACCCCCGGCGCAACCCTTCCCCGTTCC
CCCACTACCACAACCCCTGCACGGTCCTGGTGCTATCGCCTTGCCACCGA
TTCACCCAGCCCTGGTGGTATCGCCATGCCCTCTCCCTG back to topprotein sequence of rna8378 >rna8378-protein ID=rna8378-protein|Name=rna8378|organism=Nannochloropsis gaditana|type=polypeptide|length=563bp
MAAATESLFLVASNIHFSDDMSLPRFGTSTRLLAATCSCSSTPCAAHAAT
SVDQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPH
SCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDV
LRQQFQTQRFANMSWRLGNTRATRVFSKPSWEALFCAGSGGAGNAGKCDV
GDRASSPSCEAGEAPTGGGGSVGVTKGKGGKETGRGYVGPDIGGLPHRLL
MRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGKATDSKQWKGGVA
VLTEEAGAESVAGLTRRWGRGREGQGGQTEGMGSRWSDLIRQGRGKEGGV
GGEEQAALTAWWREARGQESAEVGAAKVPTLAAAWSLLVPETPGSLAPWA
VPTTDCGGLSVAALKARAQRLFLPPVLDATSDAGVGALAREEMQARWDAC
FLSSRATLPCLNAGGSDVEELAHRWGKLMGVDVGEEVGGKPWAALAARWE
ERSVVGADREGGDVGGLDSKTLKTQWATTNVGGKVRLTEEAGACGTEVLE
GRWGMGREGNKHG back to topmRNA from alignment at KK037248.1:526922..529992+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8378 ID=rna8378|Name=rna8378|organism=Nannochloropsis gaditana|type=mRNA|length=3071bp|location=Sequence derived from alignment at KK037248.1:526922..529992+ (Nannochloropsis gaditana)
GTTCTCGTGTGTGGTCCCCTCCATATGGCTGACGCCGCTGTCACGCCGCG
CCGGGATGagctcccccttttctctcgcCATTGAATCAACGTGATTCATT
GCCAAGTTGCACGATTTGTTCCTTCACGTGCCCGCGAAACAGGCCATATA
TATCTCTCAATGCTCAACTTATGCATTTTCATTACAAATCTTACACTTGC
GCAGGCGCTGGCACAGTTGAGGACCAGCCACAAACAGCCGTAATTTACGG
GAAAGTAGAAATTCCTAACCACCAAGTCTCGCAGGTGCTTCTTTGCGCTC
CAACACACCACAACTATGGCGGCAGCCACGGAATCGCTTTTCTTGGTGGC
GTCTAACATCCACTTTTCGGATGACATGTCTCTTCCGCGGTTTGGCACAA
GTACCCGCCTCCTTGCCGCGACCTGCTCAtgctcttccaccccttgTGCT
GCGCACGCCGCAACTTCAGTGGATCAGGCCGCGTcagtggaggacgggga
cgccTTGGAGCCTCAAGATGACGTCTTTTACTTGAGTCGTCTCAATGATC
CCACGACTTACTTTTTTCAGTGGATCTGCAAGCGGTACGGCCTCACTGTA
AAGGCCGAGCCGCACTCGTGCCCGATATGCCTCGAGACATCGGAAAATAG
CATCCAGTTGTCGTGTGGTAGGTAaacagggcgggaagagcatCTTTTAC
GTTCTCGAGTCATGtgcggaagacgaagaatGTGCATGAATGGATGGAAT
TCTGAGCTGTATGCCATGCGGTGTGAGAGGGGGCGTGGACGCAGAAGAGG
GGCGTTCCATTCTTATATGGTCATTCATGTTCAAttatcccttccttcgc
accTTCAGGACACACCTTTTGTCGTCAATGTCTAAAGGCGGCTGCTGAAC
AAAAAATGTCCTCGTGCGCCCTGTGCCGAAAGTCGCACACCCTCGATCCT
GACGTGCTTCGGCAGCAATTTCAGACCCAACGTTTTGCCAACATGTCCTG
GCGTCTCGGAAACACGCGAGCCACCCGTGTCTTCTCCAAGCCAAGTTGGG
AGGCCCTCTTTTGTGCGGGTAGCGGTGGAGCGGGGAACGCTGGGAAATGT
GACGTAGGGGATcgtgcctcttccccgtcctgtgaggcgggagaggcgcc
tacagggggcggaggcagtgTGGGCGTGaccaaagggaaaggaggcaaag
agacAGGCCGGGGGTACGTGGGCCCGGACATTGGTGGCTTGCCGCACCGG
TTGTTGATGCGACGGGCCGCCAAGAGCGTTAGGCGggccttcgtctcccc
tGACCCCGACGTCGGAGGATCCACGCGAGCCGAGCTCCAGCGTCGATGGT
CCATGCTGATGGGCGGAAAAGCAACCGACTCCAAgcaatggaagggagga
gtcgccGTCCtgaccgaggaggcgggggcggaaagCGTGGCAGGGTTGac
gaggcggtgggggaggggaagggaagggcagggagggcagacggAAGGCA
TGGGGTCGCGTTGGTCGGACTTGATACGGCAAggtcgagggaaggaggga
ggggtaggaggggaggaacaggCGGCATTGACagcctggtggagggaggc
gcggggcCAGGAAAGCGCCGAGGTTGGCGCGGCAAAGGTTCCgaccttgg
cggcggcgtggTCCCTGCTCGTCCCCGAGACTCCcggctccctcgcccct
tggGCCGTTCCCACCACGGACTGCGGGGGCTTGTCGGTGGCGGCGCTGAA
AGCCCGGGCCcagcgcctcttccttccccccgtcctcgacgCGACCTCGG
ACGCAGGGGTAGGCGCCTTGGCCCGAGAGGAGATGCAGGCCCGTTGGGAT
GCATGCTTCCTCTCGTCACGCGCGACGTTGCCGTGCCTGAATGCGGGGGG
TagcgacgtggaggagctggcgcacCGTTGGGGAAAATTGATGGGCGTGg
atgtgggggaggaggttggggggaAACCGtgggcggcgctggcggcacgt
tgggaagaaaggagcgTGGTGGGTGCGgacagagaggggggggacgtggg
aggTTTGGATTCGAAGACTCTCAAGACGCAGTGGGCCACAACGAAtgtag
gagggaaggtgaggttaacggaggaggcgggggcctgtGGGACGGAAGTG
TTGGAAGGCCggtgggggatggggagggagggaaacaagcACGGTTGAGG
TCGACgcagaaggggaggtggtgacaGATAGGGGGGTCAAATGGCTGTAC
ATAGTGAGGAAACAGCACGTATCGGGGtcgggggcgaaggaggctggTTa
gtggagagggtgggagggcaccGAGGTGGAGAGGATTCGATGGGTCGtag
tgggggggggggggggagtttAAGGCCTACTTTGTTTGAAAAGCAAGCAG
GCGCGCCAGGTTGAGAAACAtgacgggaaggaaagctaTGGACGAACTGG
AAAAAGCGGCGTCCCAGATACAGGGCACGTGTACATACCCggaggtggga
aaaaaaacgggggaggaacgcCATGAACACCTCGAGAAAGTCGAGAAAGT
CGAGTTAGTCCACGCGGTATCTAGGAGGTTAGGAGTAtgatgggggaaga
ggaaatggagatACCGTTGAATTTGAGAGGCGGCTGAGGGTTGGCTTTGG
TGGGGTGGATGCATGGcggtgggagaagaagattGATAGAGACGACGAAG
TGGAGGCAAGAGACGAGCATTGGTACACACGACGCAGTGGAGGCGATAGG
AGATGGTCCATAGACACGACGCAGTGGGAGGGGTAGGTGAAAGGCGATAC
ATGAGCAGGAGCAGTAGAGGAGATAATCCATTTTCAACAGAGAATCGAAG
CGGTGGGAACAGTAGTGGCATCGACGACTGGCAGACCAGTCCGCGTGTGC
TATAGAGAAAGCCGACTCACAGTGGCGAATGTGCGATAGCGGAAGCgata
gggaggggaggacgagggagggcaagatgGCAAGAATCGGAAGGTAAAAA
AATAATGACAGGACTGGTACCTGCCAAGCTTTGTTGGATGCAAAGGCGTG
TGTATGGATATTTGAAGAGCC back to topCoding sequence (CDS) from alignment at KK037248.1:526922..529992+ >rna8378 ID=rna8378|Name=rna8378|organism=Nannochloropsis gaditana|type=CDS|length=3384bp|location=Sequence derived from alignment at KK037248.1:526922..529992+ (Nannochloropsis gaditana)
ATGGCGGCAGCCACGGAATCGCTTTTCTTGGTGGCGTCTAACATCCACTT
TTCGGATGACATGTCTCTTCCGCGGTTTGGCACAAGTACCCGCCTCCTTG
CCGCGACCTGCTCAtgctcttccaccccttgTGCTGCGCACGCCGCAACT
TCAGTGGATCAGGCCGCGTcagtggaggacggggacgccTTGGAGCCTCA
AGATGACGTCTTTTACTTGAGTCGTCTCAATGATCCCACGACTTACTTTT
TTCAGTGGATCTGCAAGCGGTACGGCCTCACTGTAAAGGCCGAGCCGCAC
TCGTGCCCGATATGCCTCGAGACATCGGAAAATAGCATCCAGTTGTCGTG
TGGACACACCTTTTGTCGTCAATGTCTAAAGGCGGCTGCTGAACAAAAAA
TGTCCTCGTGCGCCCTGTGCCGAAAGTCGCACACCCTCGATCCTGACGTG
CTTCGGCAGCAATTTCAGACCCAACGTTTTGCCAACATGTCCTGGCGTCT
CGGAAACACGCGAGCCACCCGTGTCTTCTCCAAGCCAAGTTGGGAGGCCC
TCTTTTGTGCGGGTAGCGGTGGAGCGGGGAACGCTGGGAAATGTGACGTA
GGGGATcgtgcctcttccccgtcctgtgaggcgggagaggcgcctacagg
gggcggaggcagtgTGGGCGTGaccaaagggaaaggaggcaaagagacAG
GCCGGGGGTACGTGGGCCCGGACATTGGTGGCTTGCCGCACCGGTTGTTG
ATGCGACGGGCCGCCAAGAGCGTTAGGCGggccttcgtctcccctGACCC
CGACGTCGGAGGATCCACGCGAGCCGAGCTCCAGCGTCGATGGTCCATGC
TGATGGGCGGAAAAGCAACCGACTCCAAgcaatggaagggaggagtcgcc
GTCCtgaccgaggaggcgggggcggaaagCGTGGCAGGGTTGacgaggcg
gtgggggaggggaagggaagggcagggagggcagacggAAGGCATGGGGT
CGCGTTGGTCGGACTTGATACGGCAAggtcgagggaaggagggaggggta
ggaggggaggaacaggCGGCATTGACagcctggtggagggaggcgcgggg
cCAGGAAAGCGCCGAGGTTGGCGCGGCAAAGGTTCCgaccttggcggcgg
cgtggTCCCTGCTCGTCCCCGAGACTCCcggctccctcgccccttggGCC
GTTCCCACCACGGACTGCGGGGGCTTGTCGGTGGCGGCGCTGAAAGCCCG
GGCCcagcgcctcttccttccccccgtcctcgacgCGACCTCGGACGCAG
GGGTAGGCGCCTTGGCCCGAGAGGAGATGCAGGCCCGTTGGGATGCATGC
TTCCTCTCGTCACGCGCGACGTTGCCGTGCCTGAATGCGGGGGGTagcga
cgtggaggagctggcgcacCGTTGGGGAAAATTGATGGGCGTGgatgtgg
gggaggaggttggggggaAACCGtgggcggcgctggcggcacgttgggaa
gaaaggagcgTGGTGGGTGCGgacagagaggggggggacgtgggaggTTT
GGATTCGAAGACTCTCAAGACGCAGTGGGCCACAACGAAtgtaggaggga
aggtgaggttaacggaggaggcgggggcctgtGGGACGGAAGTGTTGGAA
GGCCggtgggggatggggagggagggaaacaagcACGGTTGAATGGCGGC
AGCCACGGAATCGCTTTTCTTGGTGGCGTCTAACATCCACTTTTCGGATG
ACATGTCTCTTCCGCGGTTTGGCACAAGTACCCGCCTCCTTGCCGCGACC
TGCTCAtgctcttccaccccttgTGCTGCGCACGCCGCAACTTCAGTGGA
TCAGGCCGCGTcagtggaggacggggacgccTTGGAGCCTCAAGATGACG
TCTTTTACTTGAGTCGTCTCAATGATCCCACGACTTACTTTTTTCAGTGG
ATCTGCAAGCGGTACGGCCTCACTGTAAAGGCCGAGCCGCACTCGTGCCC
GATATGCCTCGAGACATCGGAAAATAGCATCCAGTTGTCGTGTGGACACA
CCTTTTGTCGTCAATGTCTAAAGGCGGCTGCTGAACAAAAAATGTCCTCG
TGCGCCCTGTGCCGAAAGTCGCACACCCTCGATCCTGACGTGCTTCGGCA
GCAATTTCAGACCCAACGTTTTGCCAACATGTCCTGGCGTCTCGGAAACA
CGCGAGCCACCCGTGTCTTCTCCAAGCCAAGTTGGGAGGCCCTCTTTTGT
GCGGGTAGCGGTGGAGCGGGGAACGCTGGGAAATGTGACGTAGGGGATcg
tgcctcttccccgtcctgtgaggcgggagaggcgcctacagggggcggag
gcagtgTGGGCGTGaccaaagggaaaggaggcaaagagacAGGCCGGGGG
TACGTGGGCCCGGACATTGGTGGCTTGCCGCACCGGTTGTTGATGCGACG
GGCCGCCAAGAGCGTTAGGCGggccttcgtctcccctGACCCCGACGTCG
GAGGATCCACGCGAGCCGAGCTCCAGCGTCGATGGTCCATGCTGATGGGC
GGAAAAGCAACCGACTCCAAgcaatggaagggaggagtcgccGTCCtgac
cgaggaggcgggggcggaaagCGTGGCAGGGTTGacgaggcggtggggga
ggggaagggaagggcagggagggcagacggAAGGCATGGGGTCGCGTTGG
TCGGACTTGATACGGCAAggtcgagggaaggagggaggggtaggagggga
ggaacaggCGGCATTGACagcctggtggagggaggcgcggggcCAGGAAA
GCGCCGAGGTTGGCGCGGCAAAGGTTCCgaccttggcggcggcgtggTCC
CTGCTCGTCCCCGAGACTCCcggctccctcgccccttggGCCGTTCCCAC
CACGGACTGCGGGGGCTTGTCGGTGGCGGCGCTGAAAGCCCGGGCCcagc
gcctcttccttccccccgtcctcgacgCGACCTCGGACGCAGGGGTAGGC
GCCTTGGCCCGAGAGGAGATGCAGGCCCGTTGGGATGCATGCTTCCTCTC
GTCACGCGCGACGTTGCCGTGCCTGAATGCGGGGGGTagcgacgtggagg
agctggcgcacCGTTGGGGAAAATTGATGGGCGTGgatgtgggggaggag
gttggggggaAACCGtgggcggcgctggcggcacgttgggaagaaaggag
cgTGGTGGGTGCGgacagagaggggggggacgtgggaggTTTGGATTCGA
AGACTCTCAAGACGCAGTGGGCCACAACGAAtgtaggagggaaggtgagg
ttaacggaggaggcgggggcctgtGGGACGGAAGTGTTGGAAGGCCggtg
ggggatggggagggagggaaacaagcACGGTTGA back to top
|