EWM22325.1, cds8351 (CDS) Nannochloropsis gaditana

Overview
NameEWM22325.1
Unique Namecds8351
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:527237..527588 +
Alignment locationKK037248.1:527780..529119 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22325.1
Productputative zinc ring finger protein
Orig transcript idgnl|cribi|Naga_100118g15.2752.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:527237..527588 +
KK037248.1supercontigKK037248.1:527780..529119 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM22325.1 vs. NCBI_GenBank
Match: gi|585102822|gb|EWM22325.1| (putative zinc ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 1135.17 bits (2935), Expect = 0.000e+0
Identity = 563/563 (100.00%), Postives = 563/563 (100.00%), Query Frame = 0
Query:    1 MAAATESLFLVASNIHFSDDMSLPRFGTSTRLLAATCSCSSTPCAAHAATSVDQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKPSWEALFCAGSGGAGNAGKCDVGDRASSPSCEAGEAPTGGGGSVGVTKGKGGKETGRGYVGPDIGGLPHRLLMRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGKATDSKQWKGGVAVLTEEAGAESVAGLTRRWGRGREGQGGQTEGMGSRWSDLIRQGRGKEGGVGGEEQAALTAWWREARGQESAEVGAAKVPTLAAAWSLLVPETPGSLAPWAVPTTDCGGLSVAALKARAQRLFLPPVLDATSDAGVGALAREEMQARWDACFLSSRATLPCLNAGGSDVEELAHRWGKLMGVDVGEEVGGKPWAALAARWEERSVVGADREGGDVGGLDSKTLKTQWATTNVGGKVRLTEEAGACGTEVLEGRWGMGREGNKHG 563
            MAAATESLFLVASNIHFSDDMSLPRFGTSTRLLAATCSCSSTPCAAHAATSVDQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKPSWEALFCAGSGGAGNAGKCDVGDRASSPSCEAGEAPTGGGGSVGVTKGKGGKETGRGYVGPDIGGLPHRLLMRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGKATDSKQWKGGVAVLTEEAGAESVAGLTRRWGRGREGQGGQTEGMGSRWSDLIRQGRGKEGGVGGEEQAALTAWWREARGQESAEVGAAKVPTLAAAWSLLVPETPGSLAPWAVPTTDCGGLSVAALKARAQRLFLPPVLDATSDAGVGALAREEMQARWDACFLSSRATLPCLNAGGSDVEELAHRWGKLMGVDVGEEVGGKPWAALAARWEERSVVGADREGGDVGGLDSKTLKTQWATTNVGGKVRLTEEAGACGTEVLEGRWGMGREGNKHG
Sbjct:    1 MAAATESLFLVASNIHFSDDMSLPRFGTSTRLLAATCSCSSTPCAAHAATSVDQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKPSWEALFCAGSGGAGNAGKCDVGDRASSPSCEAGEAPTGGGGSVGVTKGKGGKETGRGYVGPDIGGLPHRLLMRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGKATDSKQWKGGVAVLTEEAGAESVAGLTRRWGRGREGQGGQTEGMGSRWSDLIRQGRGKEGGVGGEEQAALTAWWREARGQESAEVGAAKVPTLAAAWSLLVPETPGSLAPWAVPTTDCGGLSVAALKARAQRLFLPPVLDATSDAGVGALAREEMQARWDACFLSSRATLPCLNAGGSDVEELAHRWGKLMGVDVGEEVGGKPWAALAARWEERSVVGADREGGDVGGLDSKTLKTQWATTNVGGKVRLTEEAGACGTEVLEGRWGMGREGNKHG 563          
BLAST of EWM22325.1 vs. NCBI_GenBank
Match: gi|298714491|emb|CBJ27513.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.79 bits (312), Expect = 2.385e-26
Identity = 55/107 (51.40%), Postives = 69/107 (64.49%), Query Frame = 0
Query:   69 DVFYLSRLNDPTTYFFQWICKRY--------GLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRL 167
            DVF LSRLND T+YFF W CK+Y        GL  K E   CPICL++   SI+L CGH+FCR CL  +A   M+SCALCR+   +DP+ LR +F  QR  N++ RL
Sbjct:   20 DVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRL 126          
BLAST of EWM22325.1 vs. NCBI_GenBank
Match: gi|676378283|ref|XP_009032420.1| (hypothetical protein AURANDRAFT_70600 [Aureococcus anophagefferens] >gi|323456912|gb|EGB12778.1| hypothetical protein AURANDRAFT_70600 [Aureococcus anophagefferens])

HSP 1 Score: 72.7886 bits (177), Expect = 1.125e-9
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 0
Query:  102 CPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATR 174
            C IC  T   +I+L CGH FC  CLK  A   +++C  CR  H LDPD LR   +  R    SWR G T+ ++
Sbjct:  623 CTICFTTKYEAIRLRCGHAFCGGCLKRCASHDIAACPHCRAPHLLDPDALRAAMEKYRKEYRSWRTGATKGSK 695          
BLAST of EWM22325.1 vs. NCBI_GenBank
Match: gi|551673761|ref|XP_005839636.1| (hypothetical protein GUITHDRAFT_57781, partial [Guillardia theta CCMP2712] >gi|428183799|gb|EKX52656.1| hypothetical protein GUITHDRAFT_57781, partial [Guillardia theta CCMP2712])

HSP 1 Score: 58.151 bits (139), Expect = 2.473e-7
Identity = 24/59 (40.68%), Postives = 33/59 (55.93%), Query Frame = 0
Query:  102 CPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRF 160
            CP+C+    N + LSCGH FC  C+ AAA     SC +CRK   L+ D ++ +    RF
Sbjct:    4 CPVCMHVLNNPLVLSCGHRFCNSCVSAAAYFGQHSCPVCRKECVLNDDNIKIETLLGRF 62          
BLAST of EWM22325.1 vs. NCBI_GenBank
Match: gi|1173956552|gb|OQS03312.1| (hypothetical protein THRCLA_04393 [Thraustotheca clavata])

HSP 1 Score: 63.5438 bits (153), Expect = 6.129e-7
Identity = 39/127 (30.71%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   44 CAAHAATSVDQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEP--HSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDP-----DVLRQQFQTQRFANM 163
            C   A T  D++ ++     L+P     Y+ +L   T      I +     +  +P    CPICL   ++ + LSC HTFC  CL  AAE  +++C +CR+  ++DP     D L QQF  +R++++
Sbjct:  115 CKKFAKTLSDESETINSDLQLQPFYAGNYVDQLYSHTAKTTDRIIRALLPNMDNKPVEECCPICLYHFKSPVTLSCHHTFCWSCLAKAAEHHINACPMCRQVQSIDPRDYEIDGLLQQF-LKRYSHI 240          
The following BLAST results are available for this feature:
BLAST of EWM22325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585102822|gb|EWM22325.1|0.000e+0100.00putative zinc ring finger protein [Nannochloropsis... [more]
gi|298714491|emb|CBJ27513.1|2.385e-2651.40conserved unknown protein [Ectocarpus siliculosus][more]
gi|676378283|ref|XP_009032420.1|1.125e-942.47hypothetical protein AURANDRAFT_70600 [Aureococcus... [more]
gi|551673761|ref|XP_005839636.1|2.473e-740.68hypothetical protein GUITHDRAFT_57781, partial [Gu... [more]
gi|1173956552|gb|OQS03312.1|6.129e-730.71hypothetical protein THRCLA_04393 [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8378rna8378Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications