rna8377, rna8377 (mRNA) Nannochloropsis gaditana

Overview
Namerna8377
Unique Namerna8377
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1158
Alignment locationKK037248.1:524481..526161 -

Link to JBrowse

Properties
Property NameValue
Productribosomal protein l22
Orig transcript idgnl|cribi|Naga_100118g14.2748.mrna
Orig protein idgnl|cribi|Naga_100118g14.2748
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:524481..526161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100118g14gene8117Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8377rna8377-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22321.1cds8350Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8377 ID=rna8377|Name=rna8377|organism=Nannochloropsis gaditana|type=mRNA|length=1158bp
ATGCAAAATATGCACACACGGTTGAGGTTTTTGTTCACTTCCACGTTCGT
GTCACCTGTAACGCGAGCAGGAGGGCCACGACCTCCTCCCGACAATCGAG
GAGACGCACCATCCTCGAAGTCCTCCAGTACGACTAGGGGTGGCGGCAGT
GGTAGGGAGGGCGGAGCACCTGCGAAACAGCAAATAAACAAAGGGAAATT
CAAAAGATTCAGCCGATCACACAACTATGTCACGTCGGAAGAAGACATGG
AGCGTCGCGATCGGTTTGAGGACTGGAAGCAAAGAAAAAAAGGGGGCGAC
GACGACGACGTGGCGGAAGGAGAAAGCGGGGAGGAGGAGGGCAGTAGCGA
GGGGGAAGGTGGGGAGGGGAAGGGAGGGGAGCGGGGGCCCGAGGACGGAG
CGGGAGGAATGGCAGAGGCCTTCAAGAAGAAGGTGCAAGTGAGGGACCTG
CCCCCCGCCGAGTCTGGGAGCGAGGAGGAGGACTACAACGGTCCAAGTAA
GGGTGGTCAGCAAGGAAGGGAGGGAGGAGAGGGCATGACGAGGAAGGAAC
GGGAGGAAGCGGCTCGAGAGAAGGCTCGAGAGGAATACCTCCGGCGGTAT
CGAGAGGGGGAGACGGAGGAGGCCAAGAAGGACCTGGCACGTTTGGCGGA
GGTACGGGCAAGGAGGGAGGAAGCGGCGAGAAAGAAGGAGGAGGAGGTGA
AAGCCCGGGAAGCGTTGAACGAGCGCTTGCGCCTTGGGGCTGAGGCCGCG
GAAGCGGGGGCAGGAGAAGGGGGGAAGGCGATCGAGGCGCTCGACCCCAG
GGAGATAAAGAAAATGAGCGGGACGAAGTTGAAGGAGTGCTTGAAGGAGC
GGGGGCTGTCCACGCAGGGGCAGAAGAAGGAGTTGGTGGACAGGCTGTGC
GGTGGCTTGCTAAAGAAATGCTTGAACAAGGGCCGTGGTGTACGACGCGG
TGGGATGAGGGAATGGGGTCTGGTACGCACAAGCATGTTCTGCGGAGCGA
GGAAGGGCTTGAGAACCTTCGCCATGCCCTGCGTCCTCTCGAGAAGTCTC
AGGCACCGTCCTATCCTGTCACGGTCTCCCGCCCTCCACGTCCCTGTGTG
GTTGCAGGAGAGCCTAGGACATTTCCGCTTTAAAAAAGAAACTTCGGGCA
GACAGTAA
back to top

protein sequence of rna8377

>rna8377-protein ID=rna8377-protein|Name=rna8377|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVN
GKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMR
VVATNKQTFELKYYTVTDEGGEDEE
back to top

mRNA from alignment at KK037248.1:524481..526161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8377 ID=rna8377|Name=rna8377|organism=Nannochloropsis gaditana|type=mRNA|length=1681bp|location=Sequence derived from alignment at KK037248.1:524481..526161- (Nannochloropsis gaditana)
CACAGGAGTGCTCCTTTCGTGTATAGCTAGCTTCATAAAGGCATTCCAAT
CGCAGAAATGGCACCAACGGTGAGTTATGAGAAATTTTAGATGGAGGAAA
GGAAAGGTGGGACCTCGCAGGCGGACTGCACAGGTGTTGTGCACATTTGT
CTCTCTAGTTTGATGGTTTGGATGAAGATATAGTGTCTGCGTTCGCAAGG
CGCAAGTATCAAGCTCTAGGGATGGGTACTTGATAAAATTATCGGGCATG
AGGACAGATCGTGGGTCTGTGTGTATGTCCGTGCGCACTCTTCTATGATC
AGCTTGGTCGGGCCCCACATCGTCGGCATGATCGCCGCCCTTGGCACGCT
TTGCTGGTTTCTCCATGCAAAGAGAGACGGAGGCACGGAGGGAGGAGCGC
GAGTGGAGGAGGTGTACAGATCAGGCGGGTCGTGAAGGTCGGGAACGGAG
CCTGCCGGAGGTGTGGCGCGGCCCACTGCCGCTTTAAGGCAGTTTCGGCG
GCACTATGTCTTCTCTCTCGTGTCAGGCGCATTTGTGTGACTGCGCTACA
TATTTTCCCTCCTCCTGTGTACTTACATATCTCAAATCTAACCCCTTCCG
GTTCGACAGAAGCTCGGCGCGAAGGGGAGGAAAGGGAGCAAGAAGAACCA
GGTCAAGTTCACGATCGACTGCAGCGACCCGGTGAAAGACGGGGTCTTAG
ACATGGCCAACTTCGAGAAATTCCTCAAGGACCGAATCAAGGTAACAGTT
GTCTCTCCCTCTTGCTCCCTTGCTCCCTCTGCCGTGCTCCTCCTTTTTTA
TCCCAACCGGCCCTCGTTCCGGAAAAGAAACTTTCATCTTCGCTTATGCC
TCCCCTCCCTCCTTCTTTCACTTTTCATCGACTCCTGTCTCAGGTCAATG
GCAAGGCCGGCGTGCTCGGAGACGCCGTGGCGGTCGCGCGGGAGAAGAGC
AAGATCCAAGTCACTGCCGAACTGCCCTTCTCAAAGCGGTACTTAAAGTA
CCTGACCAAGAAGCACCTGAAGAAGCAGCAACTCCGCGACTACATGCGTG
TGGTGGCGACGAACAAGCAAACCTTCGAGTTGAAGTACTACACAGTCACG
GACGAGGGGGGTGAGGACGAGGAGTAAGGAGAAGGAGGGGGGCGAAGGGC
GGGGAGAGGAGGTGGGCTGGTGATGCGGTCGAGGGGGGCGAATGCTGCTC
GGTATCTGTCTCTTCGCACGGCTCGCGGCGGTGGCGGGAGAGAAGAGGAT
TGAAACAGAGGCAAAGCAACCAAGCACGGCCTCGGCTTTACTGTCTGCCC
GAAGTTTCTTTTTTAAAGCGGAAATGTCCTAGGCTCTCCTGCAACCACAC
AGGGACGTGGAGGGCGGGAGACCGTGACAGGATAGGACGGTGCCTGAGAC
TTCTCGAGAGGACGCAGGGCATGGCGAAGGTTCTCAAGCCCTTCCTCGCT
CCGCAGAACATGCTTGTGCGTACCAGACCCCATTCCCTCATCCCACCGCG
TCGTACACCACGGCCCTTGTTCAAGCATTTCTTTAGCAAGCCACCGCACT
CGGAGACGCAGGGAGACCCCCGGCGCAACCCTTCCCCGTTCCCCCACTAC
CACAACCCCTGCACGGTCCTGGTGCTATCGCCTTGCCACCGATTCACCCA
GCCCTGGTGGTATCGCCATGCCCTCTCCCTG
back to top

Coding sequence (CDS) from alignment at KK037248.1:524481..526161-

>rna8377 ID=rna8377|Name=rna8377|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at KK037248.1:524481..526161- (Nannochloropsis gaditana)
GTCAATGGCAAGGCCGGCGTGCTCGGAGACGCCGTGGCGGTCGCGCGGGA
GAAGAGCAAGATCCAAGTCACTGCCGAACTGCCCTTCTCAAAGCGGTACT
TAAAGTACCTGACCAAGAAGCACCTGAAGAAGCAGCAACTCCGCGACTAC
ATGCGTGTGGTGGCGACGAACAAGCAAACCTTCGAGTTGAAGTACTACAC
AGTCACGGACGAGGGGGGTGAGGACGAGGAGTAAAAGCTCGGCGCGAAGG
GGAGGAAAGGGAGCAAGAAGAACCAGGTCAAGTTCACGATCGACTGCAGC
GACCCGGTGAAAGACGGGGTCTTAGACATGGCCAACTTCGAGAAATTCCT
CAAGGACCGAATCAAGATGGCACCAACGGTCAATGGCAAGGCCGGCGTGC
TCGGAGACGCCGTGGCGGTCGCGCGGGAGAAGAGCAAGATCCAAGTCACT
GCCGAACTGCCCTTCTCAAAGCGGTACTTAAAGTACCTGACCAAGAAGCA
CCTGAAGAAGCAGCAACTCCGCGACTACATGCGTGTGGTGGCGACGAACA
AGCAAACCTTCGAGTTGAAGTACTACACAGTCACGGACGAGGGGGGTGAG
GACGAGGAGTAAAAGCTCGGCGCGAAGGGGAGGAAAGGGAGCAAGAAGAA
CCAGGTCAAGTTCACGATCGACTGCAGCGACCCGGTGAAAGACGGGGTCT
TAGACATGGCCAACTTCGAGAAATTCCTCAAGGACCGAATCAAGATGGCA
CCAACGGTCAATGGCAAGGCCGGCGTGCTCGGAGACGCCGTGGCGGTCGC
GCGGGAGAAGAGCAAGATCCAAGTCACTGCCGAACTGCCCTTCTCAAAGC
GGTACTTAAAGTACCTGACCAAGAAGCACCTGAAGAAGCAGCAACTCCGC
GACTACATGCGTGTGGTGGCGACGAACAAGCAAACCTTCGAGTTGAAGTA
CTACACAGTCACGGACGAGGGGGGTGAGGACGAGGAGTAAAAGCTCGGCG
CGAAGGGGAGGAAAGGGAGCAAGAAGAACCAGGTCAAGTTCACGATCGAC
TGCAGCGACCCGGTGAAAGACGGGGTCTTAGACATGGCCAACTTCGAGAA
ATTCCTCAAGGACCGAATCAAGATGGCACCAACG
back to top
Synonyms
Publications