EWM22321.1, cds8350 (CDS) Nannochloropsis gaditana

Overview
NameEWM22321.1
Unique Namecds8350
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:526093..526104 -
Alignment locationKK037248.1:525421..525552 -
Alignment locationKK037248.1:525035..525268 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22321.1
Productribosomal protein l22
Orig transcript idgnl|cribi|Naga_100118g14.2748.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:526093..526104 -
KK037248.1supercontigKK037248.1:525421..525552 -
KK037248.1supercontigKK037248.1:525035..525268 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR002671Ribosomal_L22e
Homology
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|553179765|ref|XP_005852758.1| (large subunit ribosomal protein L22e [Nannochloropsis gaditana CCMP526] >gi|422295775|gb|EKU23074.1| large subunit ribosomal protein L22e [Nannochloropsis gaditana CCMP526] >gi|585102818|gb|EWM22321.1| ribosomal protein l22 [Nannochloropsis gaditana])

HSP 1 Score: 254.603 bits (649), Expect = 8.927e-86
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
            MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE
Sbjct:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|168014447|ref|XP_001759763.1| (predicted protein [Physcomitrella patens] >gi|162688893|gb|EDQ75267.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 153.295 bits (386), Expect = 1.153e-45
Identity = 71/116 (61.21%), Postives = 95/116 (81.90%), Query Frame = 0
Query:   12 KGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNK--QTFELKYYTVTDEGGEDEE 125
            KG KK Q  FTIDC  PV+D ++D+A+FEKFL DRIKV+GKAGVLG+A++++REK+KI VT+E  FSKRYLKYLTKKHLKK  +RD++RV+A+NK    +EL+Y+ + D+  E+EE
Sbjct:   11 KGKKKAQT-FTIDCGKPVEDKIMDIASFEKFLNDRIKVDGKAGVLGNAISISREKNKISVTSESSFSKRYLKYLTKKHLKKHNVRDWLRVIASNKDRNVYELRYFNIADQDAEEEE 125          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|1035926439|gb|OAY56027.1| (hypothetical protein MANES_03G197000 [Manihot esculenta])

HSP 1 Score: 144.05 bits (362), Expect = 4.714e-42
Identity = 66/106 (62.26%), Postives = 87/106 (82.08%), Query Frame = 0
Query:   21 FTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNK--QTFELKYYTVTDEGGEDE 124
            FTIDCS PV+D ++D+A+ EKFL++RIKV GKAGVLGD+V V REKSKI VT++  FS+RYLKYLTKKHLKK  +RD++RV+A+NK    +EL+Y+ + +  GEDE
Sbjct:   21 FTIDCSKPVEDKIMDIASLEKFLQERIKVGGKAGVLGDSVTVTREKSKITVTSDSRFSQRYLKYLTKKHLKKHNVRDWLRVIASNKDPNVYELRYFNIAENEGEDE 126          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|762137042|ref|XP_011451810.1| (PREDICTED: 60S ribosomal protein L22-like [Crassostrea gigas])

HSP 1 Score: 142.51 bits (358), Expect = 2.515e-41
Identity = 58/100 (58.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query:   19 VKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTD 118
            +++TIDC+ PV+DG++D+ NFEKFL++RIKVNGK G  G+ VA+ R K+KI +T+++PFSKRYLKY+TKK+LKK  LRD++RVVA NK+++EL+Y+ + +
Sbjct:   24 LRYTIDCTHPVEDGIMDVGNFEKFLQERIKVNGKTGNFGNNVALERNKNKINLTSDIPFSKRYLKYMTKKYLKKNNLRDWLRVVANNKESYELRYFQINN 123          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|1214691383|gb|OWZ06313.1| (60S ribosomal protein L22 [Phytophthora megakarya])

HSP 1 Score: 140.584 bits (353), Expect = 1.262e-40
Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 0
Query:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
            MAP     KG+K SKKN +KFTIDC+ PV D VLD A+FEKFL DRIKV+GK GVLGDAV + REK+K+QV A  PFSKRYLKYLTKK+LKKQQLRDY+ V+A++K T+EL+Y+ + D G + +E
Sbjct:    1 MAP---AHKGKKISKKNLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVDGKTGVLGDAVRITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDADE 122          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|695370546|ref|XP_009514337.1| (hypothetical protein PHYSODRAFT_353368 [Phytophthora sojae] >gi|348687248|gb|EGZ27062.1| hypothetical protein PHYSODRAFT_353368 [Phytophthora sojae])

HSP 1 Score: 139.428 bits (350), Expect = 3.454e-40
Identity = 81/125 (64.80%), Postives = 98/125 (78.40%), Query Frame = 0
Query:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
            MAP     KG+K SKK  +KFTIDC+ PV D VLD A+FEKFL DRIKV GK GVLGDAV + REK+K+QV A  PFSKRYLKYLTKK+LKKQQLRDY+ V+A++K T+EL+Y+ + D G  D+E
Sbjct:    1 MAP---AHKGKKVSKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGDAVKITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNADDE 122          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|301123677|ref|XP_002909565.1| (60S ribosomal protein L22, putative [Phytophthora infestans T30-4] >gi|262100327|gb|EEY58379.1| 60S ribosomal protein L22, putative [Phytophthora infestans T30-4])

HSP 1 Score: 137.117 bits (344), Expect = 2.475e-39
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = 0
Query:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
            MAP     KG+K SKK  +KFTIDC+ PV D VLD A+FEKFL DRIKV GK GVLGDAV + REK+K+QV A  PFSKRYLKYLTKK+LKKQQLRDY+ V+A++K T+EL+Y+ + D G + +E
Sbjct:    1 MAP---AHKGKKVSKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGDAVKITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDADE 122          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|675188707|ref|XP_008903238.1| (hypothetical protein PPTG_10318 [Phytophthora parasitica INRA-310] >gi|566027900|gb|ETI50811.1| hypothetical protein F443_05723 [Phytophthora parasitica P1569] >gi|567965228|gb|ETK90701.1| hypothetical protein L915_05587 [Phytophthora parasitica] >gi|567993943|gb|ETL44109.1| hypothetical protein L916_05528 [Phytophthora parasitica] >gi|568023220|gb|ETL97282.1| hypothetical protein L917_05413 [Phytophthora parasitica] >gi|568053609|gb|ETM50432.1| hypothetical protein L914_05535 [Phytophthora parasitica] >gi|568096692|gb|ETN11439.1| hypothetical protein PPTG_10318 [Phytophthora parasitica INRA-310] >gi|570331603|gb|ETO79551.1| hypothetical protein F444_05773 [Phytophthora parasitica P1976] >gi|570955441|gb|ETP20600.1| hypothetical protein F441_05730 [Phytophthora parasitica CJ01A1] >gi|570990598|gb|ETP48517.1| hypothetical protein F442_05771 [Phytophthora parasitica P10297])

HSP 1 Score: 137.117 bits (344), Expect = 2.949e-39
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = 0
Query:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
            MAP     KG+K SKK  +KFTIDC+ PV D VLD A+FEKFL DRIKV GK GVLGDAV + REK+K+QV A  PFSKRYLKYLTKK+LKKQQLRDY+ V+A++K T+EL+Y+ + D G + +E
Sbjct:    1 MAPAN---KGKKVSKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGDAVKITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDADE 122          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|953501338|emb|CEG37339.1| (60s ribosomal protein l22 [Plasmopara halstedii])

HSP 1 Score: 137.117 bits (344), Expect = 3.040e-39
Identity = 77/125 (61.60%), Postives = 100/125 (80.00%), Query Frame = 0
Query:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
            MAP  +  KG+K SKK  +KFTIDC+ PV D VLD A+FEKFL DRIK+NGK GVLG++V + REK+K+Q+ A  PFSKRYLKYLTKK+LKKQQLRDY+ V+A++K T+EL+Y+ + D G + +E
Sbjct:    1 MAP--IQQKGKKISKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKINGKTGVLGESVKITREKTKLQIVAMPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKSTYELRYFNIHDAGNDADE 123          
BLAST of EWM22321.1 vs. NCBI_GenBank
Match: gi|1173956463|gb|OQS03237.1| (60S ribosomal protein L22 [Thraustotheca clavata])

HSP 1 Score: 135.961 bits (341), Expect = 6.086e-39
Identity = 75/114 (65.79%), Postives = 95/114 (83.33%), Query Frame = 0
Query:   12 KGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
            K SKKN +KFTIDCS PV+D VLD+A+FEKFL DRIKVNGK GVLGDAV ++REK+K+ + A  PFSKRYLKYLTKK+LKKQQLRDY+ V+A++K T+EL+Y+ +     +D+E
Sbjct:    9 KSSKKNLLKFTIDCSTPVEDQVLDVASFEKFLHDRIKVNGKTGVLGDAVTISREKTKLHIAAVAPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKSTYELRYFNI--HNAKDDE 120          
The following BLAST results are available for this feature:
BLAST of EWM22321.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179765|ref|XP_005852758.1|8.927e-86100.00large subunit ribosomal protein L22e [Nannochlorop... [more]
gi|168014447|ref|XP_001759763.1|1.153e-4561.21predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1035926439|gb|OAY56027.1|4.714e-4262.26hypothetical protein MANES_03G197000 [Manihot escu... [more]
gi|762137042|ref|XP_011451810.1|2.515e-4158.00PREDICTED: 60S ribosomal protein L22-like [Crassos... [more]
gi|1214691383|gb|OWZ06313.1|1.262e-4064.8060S ribosomal protein L22 [Phytophthora megakarya][more]
gi|695370546|ref|XP_009514337.1|3.454e-4064.80hypothetical protein PHYSODRAFT_353368 [Phytophtho... [more]
gi|301123677|ref|XP_002909565.1|2.475e-3964.0060S ribosomal protein L22, putative [Phytophthora ... [more]
gi|675188707|ref|XP_008903238.1|2.949e-3964.00hypothetical protein PPTG_10318 [Phytophthora para... [more]
gi|953501338|emb|CEG37339.1|3.040e-3961.6060s ribosomal protein l22 [Plasmopara halstedii][more]
gi|1173956463|gb|OQS03237.1|6.086e-3965.7960S ribosomal protein L22 [Thraustotheca clavata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8377rna8377Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications