rna8369, rna8369 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8369
Unique Name	rna8369
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	570
Alignment location	KK037248.1:503150..505316 +

Link to JBrowse

Properties


Property Name	Value
Product	eukaryotic initiation factor 3 p66 subunit
Orig transcript id	gnl\|cribi\|Naga_100118g3.2757.mrna
Orig protein id	gnl\|cribi\|Naga_100118g3.2757
Gene	EIF3d
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:503150..505316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EIF3d	gene8109	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8369	rna8369-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22330.1	cds8342	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:503150..505316+
coding sequence from alignment at KK037248.1:503150..505316+

mRNA sequence

>rna8369 ID=rna8369|Name=rna8369|organism=Nannochloropsis gaditana|type=mRNA|length=570bp
ATGGAGCCGTCGCTCCCCTTGGTCGCGTGTGTGACGACGGATTTTGCGAT
GCAGAACGTGATGCTTCAAATGGGGCTCCGCTTGATGTCCTTGGAAGGCG
CGGCGGTGACGCGCGTGAAGCAATGGGCGCGTCGGTGCGAGAGTTGCGCC
AAACTCGTGCACGACCAGGACCGGATGTTTTGCCCGCGCTGTGGGAATGC
TTACCTGTCTCGAGTTTCTATCTCGGTGGACAGTGCCACCGGTCAACTGC
GGGTGCATCTCAGCAAGCTGTGGCGGCCGCGGCCAGGCTGCAAATACTCG
ATTCCCAAACCCGGGAAGGGGAAGGCGAGTCGGTGGGAAGGGGATTTGTT
GCTGCGAGAGGACCAACTCCAGATGGGAATCTGGCAGCAGAAGATGAAAA
GGCGGACCAAAATGCTGGACAGTATGTTCGGAGCAGACATCACGGAGACC
TTGGGGGTGGCGGTAACCAAAAGTACGGCAGCAAACGGTATACAGTTTGG
GTATGGGAGAAAGAATCCCAATTCTCAGCGTGGAAGGGAGAGACGAGGGA
AGAGAAAGAAGAAAAATTAG

protein sequence of rna8369

>rna8369-protein ID=rna8369-protein|Name=rna8369|organism=Nannochloropsis gaditana|type=polypeptide|length=658bp
MAHDGDGENGGVEELPFNTPSVFLNEHGWGPTPDNDPAQFRFLPYCPFNK
TDRLGKAAELTQSLYYSRHRDQRRSRFEDAYRVSNESLKYEYDQAEDKSF
RMVDSEKGKRKVKSRFGPPFKPGGFGGRGRGGARGGARDVKALAVQSGAG
DRRRVQGGMGPGGRGGRLGWRGRGGAFRGRIENRKASVNVENDWVALEDV
DLPQLGKLHVANVPEVEDLKWYGALDQYNEAYDKVTARHERPLKAFDKIL
PYYVNTMDDPNLERYAAEEFAGQVFATDAVLAHLMTCGRSHFSYREQICE
LAWLRPRVLTYYPTLNASTLPVYANMRDHAQQFPNGLLFLYAREDEFALK
TMTVNETATEMPPLPDSEDHVNHPRHLELEATAINQNFSHQILKRPVPTN
ASTPVPTTRKTYQPNPFFNAQEEQEGSEPATVAYRYRRFQLGPYRLVART
ELQGYLLRGGKEGYLTSYALNEWETQRWRQKIDVQKGSILATELKNNSFK
LAKWAAQSLLAGADLMKVGFVSRVSQASNVDHLVLGTTQYKPQEFAERML
NLKVTNMWGIIKWLCDKFLSPESSLESGKYVLLKDPNKPTLRIYAVPLDA
FEGDEEDEDEDEDEDEEYDDDGAPDKTSGRDGEEEEEEEDTGAKHRQFSG
PPQTGPVI

mRNA from alignment at KK037248.1:503150..505316+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8369 ID=rna8369|Name=rna8369|organism=Nannochloropsis gaditana|type=mRNA|length=2167bp|location=Sequence derived from alignment at KK037248.1:503150..505316+ (Nannochloropsis gaditana)
ATGGCCCACGACGGAGACGGGGAGAacgggggagtggaggagttgCCCTT
TAATACGCCGTCTGTCTTTTTAAATGAGCATGGGTGGGGCCCCACCCCCG
ACAACGACCCCGCACAATTTAGGTTCCTGCCTTACTGTCCCTTCAATAAA
ACGGACCGCTTGGGCAAGGCTGCCGAGCTGACTCAAAGCCTGTATTATTC
GCGCCATCGTGACCAACGTCGGTCTCGTTTCGAGGACGCATACCGGGTCT
CGAACGAAAGTTTGAAGTACGAGTACGACCAGGCAGAAGACAAGTCGTTT
AGGATGGTGGAttcggaaaagggaaaaCGCAAGGTCAAGAGCCGCTTTGG
CCCTCCCTTCAAACCGGGAGGGtttggaggacgtggtcgggGGGGTGCGC
GTGGCGGGGCGAGAGACGTGAAGGCATTGGCTGTGCAGAGTGGGGCTGGA
GACCGCCGACGTGTCCAAGGGGGAATGGGGccagggggacggggaggccg
attgggctggcgggggcgtggcggagcCTTTCGAGGACGAATAGAGAATA
GGAAGGCAAGCGTGAACGTGGAGAACGACTGGGtggccttggaggacgtg
gatCTTCCTCAACTGGGGAAATTGCACGTGGCGAACGtgccggaggtgga
ggacttgAAATGGTACGGAGCCTTGGACCAGTACAACGAGGCGTACGACA
AGGTCACCGCCCGGCATGAACGGCCATTGAAAGCGTTCGACAAGATTCTG
CCGTACTACGTGAATACCATGGACGACCCCAACTTGGAGCGCTACGCGGC
GGAGGAATTCGCCGGGCAGGTGTTTGCCACGGACGCGGTCCTGGCCCATC
TCATGACGTGCGGGCGCTCGGTAaggccaagagggagggagcgagggagc
gaggagggacgggggccCGGGAGGCGACACTCGATGATTAGCATTTCTCG
TACCGAGAGCAGATATGTGAGTTGGCATGGTTGCGCCCTCGGGTCTTAAC
CTACTATCCAACACTGAACGCGTCCACACTACCAGTATACGCTAATATGA
GGGATCATGCACGTCCCTTTGAGGGTTGGAGCCTGCCACATCTCTCCTAA
CACGCCCTgatgcctctttcccctccctccctccgtcccaggTCTACCCT
TGGGACATTGTGGCCCATAAGGTGGAGTCAGAGCAGTTTCCCAACGGCCT
GCTCTTTTTGTACGCCCGGGAGGACGAGTTCGCCCTCAAGACGATGACGG
TGAACGAGACGGCGACGGAgatgcccccccttcccgatTCAGAGGACCAT
GTCAACCACCCCCGGCACCTGGAGCTCGAGGCAACCGCCATCAACCAGAA
CTTCTCCCACCAGATCTTGAAACGGCCAGTGCCGACAAATGCCTCAACCC
CCGTCCCCACCACCCGCAAGACGTATCAGCCCAATCCCTTCTTTAACGCC
caggaggaacaggaggggTCGGAGCCGGCGACCGTGGCATATCGGTACCG
GCGCTTTCAGCTGGGACCTTACAGGTTAGTGGCCCGCACGGAGTTGCAAG
GCTACCTGCTTCggggtggaaaagaggggtACTTAACCAGCTATGCCCTC
AACGAGTGGGAAACCCAACGCTGGCGTCAGAAGATCGACGTGCAGAAGGG
CAGCATTTTGGCCACGGAGTTGAAGAATAACAGCTTCAAGCTGGCTAAGT
GGGCGGCTCAGTCCCTTTTGGCCGGCGCCGATTTGATGAAAGTCGGCTTC
GTCTCTCGCGTCTCGCAGGCCTCGAACGTGGACCACCTGGTTCTGGGCAC
CACGCAGTACAAACCTCAAGAATTCGCAGAACGGATGCTGAATCTAAAAG
TGACGAACATGTGGGGGATCATCAAGTGGTTGTGCGACAAATTCCTTTCG
CCTGAGAGCAGCTTGGAGTCGGGGAAGTATGTTCTACTTAAAGACCCGAA
CAAGCCGACCTTGCGGATTTATGCGGTACCCTTGGACGCGTTCgaagggg
atgaagaggacgaggacgaggacgaggacgaagacgaggagtaTGATGAC
GATGGAGCACCAGACAAGACCTCGGGacgggatggagaggaggaggaaga
agaagaggacacaGGGGCAAAACATCGTCAATTTTCGGGGCCGCCTCAAA
CAGGACCAGTAATCtaa

Coding sequence (CDS) from alignment at KK037248.1:503150..505316+

>rna8369 ID=rna8369|Name=rna8369|organism=Nannochloropsis gaditana|type=CDS|length=5931bp|location=Sequence derived from alignment at KK037248.1:503150..505316+ (Nannochloropsis gaditana)
ATGGCCCACGACGGAGACGGGGAGAacgggggagtggaggagttgCCCTT
TAATACGCCGTCTGTCTTTTTAAATGAGCATGGGTGGGGCCCCACCCCCG
ACAACGACCCCGCACAATTTAGGTTCCTGCCTTACTGTCCCTTCAATAAA
ACGGACCGCTTGGGCAAGGCTGCCGAGCTGACTCAAAGCCTGTATTATTC
GCGCCATCGTGACCAACGTCGGTCTCGTTTCGAGGACGCATACCGGGTCT
CGAACGAAAGTTTGAAGTACGAGTACGACCAGGCAGAAGACAAGTCGTTT
AGGATGGTGGAttcggaaaagggaaaaCGCAAGGTCAAGAGCCGCTTTGG
CCCTCCCTTCAAACCGGGAGGGtttggaggacgtggtcgggGGGGTGCGC
GTGGCGGGGCGAGAGACGTGAAGGCATTGGCTGTGCAGAGTGGGGCTGGA
GACCGCCGACGTGTCCAAGGGGGAATGGGGccagggggacggggaggccg
attgggctggcgggggcgtggcggagcCTTTCGAGGACGAATAGAGAATA
GGAAGGCAAGCGTGAACGTGGAGAACGACTGGGtggccttggaggacgtg
gatCTTCCTCAACTGGGGAAATTGCACGTGGCGAACGtgccggaggtgga
ggacttgAAATGGTACGGAGCCTTGGACCAGTACAACGAGGCGTACGACA
AGGTCACCGCCCGGCATGAACGGCCATTGAAAGCGTTCGACAAGATTCTG
CCGTACTACGTGAATACCATGGACGACCCCAACTTGGAGCGCTACGCGGC
GGAGGAATTCGCCGGGCAGGTGTTTGCCACGGACGCGGTCCTGGCCCATC
TCATGACGTGCGGGCGCTCGCATTTCTCGTACCGAGAGCAGATATGTGAG
TTGGCATGGTTGCGCCCTCGGGTCTTAACCTACTATCCAACACTGAACGC
GTCCACACTACCAGTATACGCTAATATGAGGGATCATGCACAGCAGTTTC
CCAACGGCCTGCTCTTTTTGTACGCCCGGGAGGACGAGTTCGCCCTCAAG
ACGATGACGGTGAACGAGACGGCGACGGAgatgcccccccttcccgatTC
AGAGGACCATGTCAACCACCCCCGGCACCTGGAGCTCGAGGCAACCGCCA
TCAACCAGAACTTCTCCCACCAGATCTTGAAACGGCCAGTGCCGACAAAT
GCCTCAACCCCCGTCCCCACCACCCGCAAGACGTATCAGCCCAATCCCTT
CTTTAACGCCcaggaggaacaggaggggTCGGAGCCGGCGACCGTGGCAT
ATCGGTACCGGCGCTTTCAGCTGGGACCTTACAGGTTAGTGGCCCGCACG
GAGTTGCAAGGCTACCTGCTTCggggtggaaaagaggggtACTTAACCAG
CTATGCCCTCAACGAGTGGGAAACCCAACGCTGGCGTCAGAAGATCGACG
TGCAGAAGGGCAGCATTTTGGCCACGGAGTTGAAGAATAACAGCTTCAAG
CTGGCTAAGTGGGCGGCTCAGTCCCTTTTGGCCGGCGCCGATTTGATGAA
AGTCGGCTTCGTCTCTCGCGTCTCGCAGGCCTCGAACGTGGACCACCTGG
TTCTGGGCACCACGCAGTACAAACCTCAAGAATTCGCAGAACGGATGCTG
AATCTAAAAGTGACGAACATGTGGGGGATCATCAAGTGGTTGTGCGACAA
ATTCCTTTCGCCTGAGAGCAGCTTGGAGTCGGGGAAGTATGTTCTACTTA
AAGACCCGAACAAGCCGACCTTGCGGATTTATGCGGTACCCTTGGACGCG
TTCgaaggggatgaagaggacgaggacgaggacgaggacgaagacgagga
gtaTGATGACGATGGAGCACCAGACAAGACCTCGGGacgggatggagagg
aggaggaagaagaagaggacacaGGGGCAAAACATCGTCAATTTTCGGGG
CCGCCTCAAACAGGACCAGTAATCtaaATGGCCCACGACGGAGACGGGGA
GAacgggggagtggaggagttgCCCTTTAATACGCCGTCTGTCTTTTTAA
ATGAGCATGGGTGGGGCCCCACCCCCGACAACGACCCCGCACAATTTAGG
TTCCTGCCTTACTGTCCCTTCAATAAAACGGACCGCTTGGGCAAGGCTGC
CGAGCTGACTCAAAGCCTGTATTATTCGCGCCATCGTGACCAACGTCGGT
CTCGTTTCGAGGACGCATACCGGGTCTCGAACGAAAGTTTGAAGTACGAG
TACGACCAGGCAGAAGACAAGTCGTTTAGGATGGTGGAttcggaaaaggg
aaaaCGCAAGGTCAAGAGCCGCTTTGGCCCTCCCTTCAAACCGGGAGGGt
ttggaggacgtggtcgggGGGGTGCGCGTGGCGGGGCGAGAGACGTGAAG
GCATTGGCTGTGCAGAGTGGGGCTGGAGACCGCCGACGTGTCCAAGGGGG
AATGGGGccagggggacggggaggccgattgggctggcgggggcgtggcg
gagcCTTTCGAGGACGAATAGAGAATAGGAAGGCAAGCGTGAACGTGGAG
AACGACTGGGtggccttggaggacgtggatCTTCCTCAACTGGGGAAATT
GCACGTGGCGAACGtgccggaggtggaggacttgAAATGGTACGGAGCCT
TGGACCAGTACAACGAGGCGTACGACAAGGTCACCGCCCGGCATGAACGG
CCATTGAAAGCGTTCGACAAGATTCTGCCGTACTACGTGAATACCATGGA
CGACCCCAACTTGGAGCGCTACGCGGCGGAGGAATTCGCCGGGCAGGTGT
TTGCCACGGACGCGGTCCTGGCCCATCTCATGACGTGCGGGCGCTCGCAT
TTCTCGTACCGAGAGCAGATATGTGAGTTGGCATGGTTGCGCCCTCGGGT
CTTAACCTACTATCCAACACTGAACGCGTCCACACTACCAGTATACGCTA
ATATGAGGGATCATGCACAGCAGTTTCCCAACGGCCTGCTCTTTTTGTAC
GCCCGGGAGGACGAGTTCGCCCTCAAGACGATGACGGTGAACGAGACGGC
GACGGAgatgcccccccttcccgatTCAGAGGACCATGTCAACCACCCCC
GGCACCTGGAGCTCGAGGCAACCGCCATCAACCAGAACTTCTCCCACCAG
ATCTTGAAACGGCCAGTGCCGACAAATGCCTCAACCCCCGTCCCCACCAC
CCGCAAGACGTATCAGCCCAATCCCTTCTTTAACGCCcaggaggaacagg
aggggTCGGAGCCGGCGACCGTGGCATATCGGTACCGGCGCTTTCAGCTG
GGACCTTACAGGTTAGTGGCCCGCACGGAGTTGCAAGGCTACCTGCTTCg
gggtggaaaagaggggtACTTAACCAGCTATGCCCTCAACGAGTGGGAAA
CCCAACGCTGGCGTCAGAAGATCGACGTGCAGAAGGGCAGCATTTTGGCC
ACGGAGTTGAAGAATAACAGCTTCAAGCTGGCTAAGTGGGCGGCTCAGTC
CCTTTTGGCCGGCGCCGATTTGATGAAAGTCGGCTTCGTCTCTCGCGTCT
CGCAGGCCTCGAACGTGGACCACCTGGTTCTGGGCACCACGCAGTACAAA
CCTCAAGAATTCGCAGAACGGATGCTGAATCTAAAAGTGACGAACATGTG
GGGGATCATCAAGTGGTTGTGCGACAAATTCCTTTCGCCTGAGAGCAGCT
TGGAGTCGGGGAAGTATGTTCTACTTAAAGACCCGAACAAGCCGACCTTG
CGGATTTATGCGGTACCCTTGGACGCGTTCgaaggggatgaagaggacga
ggacgaggacgaggacgaagacgaggagtaTGATGACGATGGAGCACCAG
ACAAGACCTCGGGacgggatggagaggaggaggaagaagaagaggacaca
GGGGCAAAACATCGTCAATTTTCGGGGCCGCCTCAAACAGGACCAGTAAT
CtaaATGGCCCACGACGGAGACGGGGAGAacgggggagtggaggagttgC
CCTTTAATACGCCGTCTGTCTTTTTAAATGAGCATGGGTGGGGCCCCACC
CCCGACAACGACCCCGCACAATTTAGGTTCCTGCCTTACTGTCCCTTCAA
TAAAACGGACCGCTTGGGCAAGGCTGCCGAGCTGACTCAAAGCCTGTATT
ATTCGCGCCATCGTGACCAACGTCGGTCTCGTTTCGAGGACGCATACCGG
GTCTCGAACGAAAGTTTGAAGTACGAGTACGACCAGGCAGAAGACAAGTC
GTTTAGGATGGTGGAttcggaaaagggaaaaCGCAAGGTCAAGAGCCGCT
TTGGCCCTCCCTTCAAACCGGGAGGGtttggaggacgtggtcgggGGGGT
GCGCGTGGCGGGGCGAGAGACGTGAAGGCATTGGCTGTGCAGAGTGGGGC
TGGAGACCGCCGACGTGTCCAAGGGGGAATGGGGccagggggacggggag
gccgattgggctggcgggggcgtggcggagcCTTTCGAGGACGAATAGAG
AATAGGAAGGCAAGCGTGAACGTGGAGAACGACTGGGtggccttggagga
cgtggatCTTCCTCAACTGGGGAAATTGCACGTGGCGAACGtgccggagg
tggaggacttgAAATGGTACGGAGCCTTGGACCAGTACAACGAGGCGTAC
GACAAGGTCACCGCCCGGCATGAACGGCCATTGAAAGCGTTCGACAAGAT
TCTGCCGTACTACGTGAATACCATGGACGACCCCAACTTGGAGCGCTACG
CGGCGGAGGAATTCGCCGGGCAGGTGTTTGCCACGGACGCGGTCCTGGCC
CATCTCATGACGTGCGGGCGCTCGCATTTCTCGTACCGAGAGCAGATATG
TGAGTTGGCATGGTTGCGCCCTCGGGTCTTAACCTACTATCCAACACTGA
ACGCGTCCACACTACCAGTATACGCTAATATGAGGGATCATGCACAGCAG
TTTCCCAACGGCCTGCTCTTTTTGTACGCCCGGGAGGACGAGTTCGCCCT
CAAGACGATGACGGTGAACGAGACGGCGACGGAgatgcccccccttcccg
atTCAGAGGACCATGTCAACCACCCCCGGCACCTGGAGCTCGAGGCAACC
GCCATCAACCAGAACTTCTCCCACCAGATCTTGAAACGGCCAGTGCCGAC
AAATGCCTCAACCCCCGTCCCCACCACCCGCAAGACGTATCAGCCCAATC
CCTTCTTTAACGCCcaggaggaacaggaggggTCGGAGCCGGCGACCGTG
GCATATCGGTACCGGCGCTTTCAGCTGGGACCTTACAGGTTAGTGGCCCG
CACGGAGTTGCAAGGCTACCTGCTTCggggtggaaaagaggggtACTTAA
CCAGCTATGCCCTCAACGAGTGGGAAACCCAACGCTGGCGTCAGAAGATC
GACGTGCAGAAGGGCAGCATTTTGGCCACGGAGTTGAAGAATAACAGCTT
CAAGCTGGCTAAGTGGGCGGCTCAGTCCCTTTTGGCCGGCGCCGATTTGA
TGAAAGTCGGCTTCGTCTCTCGCGTCTCGCAGGCCTCGAACGTGGACCAC
CTGGTTCTGGGCACCACGCAGTACAAACCTCAAGAATTCGCAGAACGGAT
GCTGAATCTAAAAGTGACGAACATGTGGGGGATCATCAAGTGGTTGTGCG
ACAAATTCCTTTCGCCTGAGAGCAGCTTGGAGTCGGGGAAGTATGTTCTA
CTTAAAGACCCGAACAAGCCGACCTTGCGGATTTATGCGGTACCCTTGGA
CGCGTTCgaaggggatgaagaggacgaggacgaggacgaggacgaagacg
aggagtaTGATGACGATGGAGCACCAGACAAGACCTCGGGacgggatgga
gaggaggaggaagaagaagaggacacaGGGGCAAAACATCGTCAATTTTC
GGGGCCGCCTCAAACAGGACCAGTAATCtaa

Synonyms

Publications