rna8368, rna8368 (mRNA) Nannochloropsis gaditana

Overview
Namerna8368
Unique Namerna8368
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length311
Alignment locationKK037248.1:501725..502294 +

Link to JBrowse

Properties
Property NameValue
Productribosome biogenesis protein nob1
Orig transcript idgnl|cribi|Naga_100118g2.2747.mrna
Orig protein idgnl|cribi|Naga_100118g2.2747
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:501725..502294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100118g2gene8108Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8368rna8368-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22320.1cds8341Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8368 ID=rna8368|Name=rna8368|organism=Nannochloropsis gaditana|type=mRNA|length=311bp
ATGAATGCCTCCATAGCTTCGTGCGCTCCGTATGGAAGTAGACACCACAC
AATCGGCAAGTTTGCCATTAAAAGGGACAGAAATGGATGTCGACTATGTA
AATTCGCCTGCGCCGCCGCTTCTCAAGGTGTTGTCCCGTTTGAGTCTAGA
TGGGACACGTCCTGTGACGGACCCCAAGCATTATCGCCTCGTCACGCTGG
ACAACGGCCTCGAAGCATTGTTGATTCATGATCCCCGCATCACTCCAAGG
GCAGACGATGGAGAAGAAATCAGAAAGAGACGAATGAAACACAAGGAAGA
GGAGGAGGGGG
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protein sequence of rna8368

>rna8368-protein ID=rna8368-protein|Name=rna8368|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCA
KLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYS
IPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITET
LGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN
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mRNA from alignment at KK037248.1:501725..502294+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8368 ID=rna8368|Name=rna8368|organism=Nannochloropsis gaditana|type=mRNA|length=570bp|location=Sequence derived from alignment at KK037248.1:501725..502294+ (Nannochloropsis gaditana)
ATGGAGCCGTCGCTCCCCTTGGTCGCGTGTGTGACGACGGATTTTGCGAT
GCAGAACGTGATGCTTCAAATGGGGCTCCGCTTGATGTCCTTGGAAGGCG
CGGCGGTGACGCGCGTGAAGCAATGGGCGCGTCGGTGCGAGAGTTGCGCC
AAACTCGTGCACGACCAGGACCGGATGTTTTGCCCGCGCTGTGGGAATGC
TTACCTGTCTCGAGTTTCTATCTCGGTGGACAGTGCCACCGGTCAACTGC
GGGTGCATCTCAGCAAGCtgtggcggccgcggccaggCTGCAAATACTCG
ATTCCCAAAcccgggaaggggaaggcgagtcggtgggaaggggaTTTGTT
GCTGCGAGAGGACCAACTCCAGATGGGAATCTGGCAGCAGAAGATGAAAA
GGCGGACCAAAATGCTGGACAGTATGTTCGGAGCAGACATCACGGAGACC
TTGGGGGTGGCGGTAACCAAAAGTACGGCAGCAAACGGTATACAGTTTGG
GTATGGGAGAAAGAATCCCAATTCTCAgcgtggaagggagagacgaggga
agagaaagaagaaaaattag
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Coding sequence (CDS) from alignment at KK037248.1:501725..502294+

>rna8368 ID=rna8368|Name=rna8368|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at KK037248.1:501725..502294+ (Nannochloropsis gaditana)
ATGGAGCCGTCGCTCCCCTTGGTCGCGTGTGTGACGACGGATTTTGCGAT
GCAGAACGTGATGCTTCAAATGGGGCTCCGCTTGATGTCCTTGGAAGGCG
CGGCGGTGACGCGCGTGAAGCAATGGGCGCGTCGGTGCGAGAGTTGCGCC
AAACTCGTGCACGACCAGGACCGGATGTTTTGCCCGCGCTGTGGGAATGC
TTACCTGTCTCGAGTTTCTATCTCGGTGGACAGTGCCACCGGTCAACTGC
GGGTGCATCTCAGCAAGCtgtggcggccgcggccaggCTGCAAATACTCG
ATTCCCAAAcccgggaaggggaaggcgagtcggtgggaaggggaTTTGTT
GCTGCGAGAGGACCAACTCCAGATGGGAATCTGGCAGCAGAAGATGAAAA
GGCGGACCAAAATGCTGGACAGTATGTTCGGAGCAGACATCACGGAGACC
TTGGGGGTGGCGGTAACCAAAAGTACGGCAGCAAACGGTATACAGTTTGG
GTATGGGAGAAAGAATCCCAATTCTCAgcgtggaagggagagacgaggga
agagaaagaagaaaaattag
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Synonyms
Publications