EWM22320.1, cds8341 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|585102817|gb|EWM22320.1| (ribosome biogenesis protein nob1 [Nannochloropsis gaditana]) HSP 1 Score: 392.889 bits (1008), Expect = 1.965e-138 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 Query: 1 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN 189 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN Sbjct: 1 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN 189
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|553189550|ref|XP_005855024.1| (RNA-binding protein NOB1, partial [Nannochloropsis gaditana CCMP526] >gi|422294036|gb|EKU21336.1| RNA-binding protein NOB1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 398.282 bits (1022), Expect = 1.794e-137 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 Query: 1 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN 189 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN Sbjct: 204 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN 392
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|299469760|emb|CBN76614.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 200.29 bits (508), Expect = 3.869e-58 Identity = 106/182 (58.24%), Postives = 127/182 (69.78%), Query Frame = 0 Query: 10 CVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPR-PGCKYSIP--KPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKK 188 CVTTDFAMQNV+LQ+GL L+SL+G AV RVKQW RC +C K + R+FCP CGNA L RVS SV++ +G RVHL K + G K+SIP P KG R+EGDLLLREDQL GIW QK +R+ K + SMFG DIT +G+ V+KS + GYGRKNPNS RGRERRGK+ K Sbjct: 378 CVTTDFAMQNVILQVGLPLLSLDGMAVHRVKQWILRCAACFKTCTEMGRLFCPVCGNATLDRVSCSVNANSGATRVHLRKNHKVNLRGSKFSIPAANPAKG---RFEGDLLLREDQLLSGIWAQKARRKEKDVSSMFGEDITGNVGLTVSKSA---DLVVGYGRKNPNSARGRERRGKKGVK 553
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|813192582|ref|XP_012208173.1| (hypothetical protein SPRG_13782 [Saprolegnia parasitica CBS 223.65] >gi|641526736|gb|KDO21075.1| hypothetical protein SPRG_13782 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 181.8 bits (460), Expect = 7.066e-53 Identity = 92/182 (50.55%), Postives = 122/182 (67.03%), Query Frame = 0 Query: 8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187 V C+TTD++MQNVMLQMGL L+S +G + RVKQW +C +C K + +R FCP CGNA L RV+ S+D T QL ++ ++ RP G K+S+P P G+ +GDLLLREDQL GIW Q+ K +K++ S FG + LGV V K T+ I GYGR NPN+Q+GRERRGK+K+ Sbjct: 185 VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELERQFCPVCGNATLERVACSLDKETEQLTLY-TRANRPTKLRGTKFSLPAPKGGR----QGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTS---ITIGYGRMNPNAQKGRERRGKKKR 358
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|1173943253|gb|OQR92134.1| (RNA-binding protein NOB1 [Achlya hypogyna]) HSP 1 Score: 184.111 bits (466), Expect = 7.113e-53 Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = 0 Query: 8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187 V C+TTD++MQNVMLQMGL L+S +G + RVKQW +C +C K + DR FCP CGNA L RV+ S+D T QL ++ ++ RP G K+S+P P G+ +GDLLLREDQL GIW Q+ K +K++ S FG + LGV V K T I GYGR NPN+Q+GRERRGK+K+ Sbjct: 269 VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELDRQFCPVCGNATLERVACSLDKETEQLTLY-TRANRPTKLRGTKFSLPMPKGGR----QGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQT---NITIGYGRMNPNAQKGRERRGKKKR 442
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|813192630|ref|XP_012208197.1| (hypothetical protein SPRG_13811 [Saprolegnia parasitica CBS 223.65] >gi|641526766|gb|KDO21105.1| hypothetical protein SPRG_13811 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 182.57 bits (462), Expect = 2.276e-52 Identity = 92/182 (50.55%), Postives = 122/182 (67.03%), Query Frame = 0 Query: 8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187 V C+TTD++MQNVMLQMGL L+S +G + RVKQW +C +C K + +R FCP CGNA L RV+ S+D T QL ++ ++ RP G K+S+P P G+ +GDLLLREDQL GIW Q+ K +K++ S FG + LGV V K T+ I GYGR NPN+Q+GRERRGK+K+ Sbjct: 272 VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELERQFCPVCGNATLERVACSLDKETEQLTLY-TRANRPTKLRGTKFSLPAPKGGR----QGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTS---ITIGYGRMNPNAQKGRERRGKKKR 445
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|953488391|emb|CEG47875.1| (rna-binding protein nob1 [Plasmopara halstedii]) HSP 1 Score: 183.726 bits (465), Expect = 2.499e-52 Identity = 93/182 (51.10%), Postives = 124/182 (68.13%), Query Frame = 0 Query: 8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPR--PGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187 VAC+TTD++MQNV+LQ+GLRL+S EG + RVKQW RC +C + DRMFCP+CGN+ + R+S S+D G + + S+ RP G KYS+PKP G+ GDLLLREDQL MGIW Q+ ++ K++ S FG + LGV K ++ IQ GYGR NPN+Q+GRERRGK+K+ Sbjct: 320 VACITTDYSMQNVVLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRMFCPKCGNSTMERMSYSLDR-DGHMTFY-SRANRPTKLSGTKYSLPKPKGGR----NGDLLLREDQLLMGIWGQRQRQHKKIMHSAFGEHVAHDLGVRAEKQSS---IQVGYGRMNPNAQKGRERRGKKKR 492
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|669161758|ref|XP_008616441.1| (hypothetical protein SDRG_12157 [Saprolegnia diclina VS20] >gi|530731856|gb|EQC30098.1| hypothetical protein SDRG_12157 [Saprolegnia diclina VS20]) HSP 1 Score: 182.57 bits (462), Expect = 2.699e-52 Identity = 92/182 (50.55%), Postives = 122/182 (67.03%), Query Frame = 0 Query: 8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187 V C+TTD++MQNVMLQMGL L+S +G + RVKQW +C +C K + +R FCP CGNA L RV+ S+D T QL ++ ++ RP G K+S+P P G+ +GDLLLREDQL GIW Q+ K +K++ S FG + LGV V K T+ I GYGR NPN+Q+GRERRGK+K+ Sbjct: 272 VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELERQFCPVCGNATLERVACSLDKETEQLTLY-TRANRPTKLRGTKFSLPAPKGGR----QGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTS---ITIGYGRMNPNAQKGRERRGKKKR 445
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|695412281|ref|XP_009525700.1| (hypothetical protein PHYSODRAFT_314356 [Phytophthora sojae] >gi|348676825|gb|EGZ16642.1| hypothetical protein PHYSODRAFT_314356 [Phytophthora sojae]) HSP 1 Score: 182.185 bits (461), Expect = 7.752e-52 Identity = 94/185 (50.81%), Postives = 126/185 (68.11%), Query Frame = 0 Query: 5 LPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPR--PGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187 LP VAC+TTDF+MQNVMLQ+GLRL+S EG + RVKQW RC +C + DR+FCP+CGN+ + RVS S+D G + + ++ RP G K+S+PKP G+ GDLLLREDQL +GIW Q+ ++ K++ S FG ++ LGV + T GI GYGR NPN+Q+GRERRGK+K+ Sbjct: 319 LP-VACITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMERVSYSLDR-DGHMTFY-TRANRPTKLSGTKFSLPKPKGGR----NGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAERQT---GIVVGYGRMNPNAQKGRERRGKKKR 493
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|1173956961|gb|OQS03607.1| (RNA-binding protein NOB1 [Thraustotheca clavata]) HSP 1 Score: 180.259 bits (456), Expect = 3.231e-51 Identity = 91/182 (50.00%), Postives = 121/182 (66.48%), Query Frame = 0 Query: 8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187 V C+TTD++MQNVMLQMGL L+S +G + RVKQW +C +C K + R FCP CGNA L RV+ S+D T QL ++ ++ RP G K+S+P P G+ +GD+LLREDQL GIW Q+ K +K++ S FG + LGV V K T+ I GYGR NPN+Q+GRERRGK+K+ Sbjct: 302 VGCITTDYSMQNVMLQMGLNLLSTDGMVIKRVKQWVLKCAACYKTTTELTRQFCPVCGNATLERVACSLDKDTEQLTLY-TRANRPTKLRGTKFSLPMPKGGR----QGDILLREDQLLHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTS---ITIGYGRMNPNAQKGRERRGKKKR 475 The following BLAST results are available for this feature:
BLAST of EWM22320.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|