EWM22320.1, cds8341 (CDS) Nannochloropsis gaditana

Overview
NameEWM22320.1
Unique Namecds8341
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:501725..502294 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22320.1
Productribosome biogenesis protein nob1
Orig transcript idgnl|cribi|Naga_100118g2.2747.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:501725..502294 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR014881NOB1_Zn-bd
Homology
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|585102817|gb|EWM22320.1| (ribosome biogenesis protein nob1 [Nannochloropsis gaditana])

HSP 1 Score: 392.889 bits (1008), Expect = 1.965e-138
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN 189
            MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN
Sbjct:    1 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN 189          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|553189550|ref|XP_005855024.1| (RNA-binding protein NOB1, partial [Nannochloropsis gaditana CCMP526] >gi|422294036|gb|EKU21336.1| RNA-binding protein NOB1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 398.282 bits (1022), Expect = 1.794e-137
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN 189
            MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN
Sbjct:  204 MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKKN 392          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|299469760|emb|CBN76614.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 200.29 bits (508), Expect = 3.869e-58
Identity = 106/182 (58.24%), Postives = 127/182 (69.78%), Query Frame = 0
Query:   10 CVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPR-PGCKYSIP--KPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKKK 188
            CVTTDFAMQNV+LQ+GL L+SL+G AV RVKQW  RC +C K   +  R+FCP CGNA L RVS SV++ +G  RVHL K  +    G K+SIP   P KG   R+EGDLLLREDQL  GIW QK +R+ K + SMFG DIT  +G+ V+KS     +  GYGRKNPNS RGRERRGK+  K
Sbjct:  378 CVTTDFAMQNVILQVGLPLLSLDGMAVHRVKQWILRCAACFKTCTEMGRLFCPVCGNATLDRVSCSVNANSGATRVHLRKNHKVNLRGSKFSIPAANPAKG---RFEGDLLLREDQLLSGIWAQKARRKEKDVSSMFGEDITGNVGLTVSKSA---DLVVGYGRKNPNSARGRERRGKKGVK 553          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|813192582|ref|XP_012208173.1| (hypothetical protein SPRG_13782 [Saprolegnia parasitica CBS 223.65] >gi|641526736|gb|KDO21075.1| hypothetical protein SPRG_13782 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 181.8 bits (460), Expect = 7.066e-53
Identity = 92/182 (50.55%), Postives = 122/182 (67.03%), Query Frame = 0
Query:    8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187
            V C+TTD++MQNVMLQMGL L+S +G  + RVKQW  +C +C K   + +R FCP CGNA L RV+ S+D  T QL ++ ++  RP    G K+S+P P  G+    +GDLLLREDQL  GIW Q+ K  +K++ S FG  +   LGV V K T+   I  GYGR NPN+Q+GRERRGK+K+
Sbjct:  185 VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELERQFCPVCGNATLERVACSLDKETEQLTLY-TRANRPTKLRGTKFSLPAPKGGR----QGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTS---ITIGYGRMNPNAQKGRERRGKKKR 358          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|1173943253|gb|OQR92134.1| (RNA-binding protein NOB1 [Achlya hypogyna])

HSP 1 Score: 184.111 bits (466), Expect = 7.113e-53
Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = 0
Query:    8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187
            V C+TTD++MQNVMLQMGL L+S +G  + RVKQW  +C +C K   + DR FCP CGNA L RV+ S+D  T QL ++ ++  RP    G K+S+P P  G+    +GDLLLREDQL  GIW Q+ K  +K++ S FG  +   LGV V K T    I  GYGR NPN+Q+GRERRGK+K+
Sbjct:  269 VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELDRQFCPVCGNATLERVACSLDKETEQLTLY-TRANRPTKLRGTKFSLPMPKGGR----QGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQT---NITIGYGRMNPNAQKGRERRGKKKR 442          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|813192630|ref|XP_012208197.1| (hypothetical protein SPRG_13811 [Saprolegnia parasitica CBS 223.65] >gi|641526766|gb|KDO21105.1| hypothetical protein SPRG_13811 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 182.57 bits (462), Expect = 2.276e-52
Identity = 92/182 (50.55%), Postives = 122/182 (67.03%), Query Frame = 0
Query:    8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187
            V C+TTD++MQNVMLQMGL L+S +G  + RVKQW  +C +C K   + +R FCP CGNA L RV+ S+D  T QL ++ ++  RP    G K+S+P P  G+    +GDLLLREDQL  GIW Q+ K  +K++ S FG  +   LGV V K T+   I  GYGR NPN+Q+GRERRGK+K+
Sbjct:  272 VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELERQFCPVCGNATLERVACSLDKETEQLTLY-TRANRPTKLRGTKFSLPAPKGGR----QGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTS---ITIGYGRMNPNAQKGRERRGKKKR 445          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|953488391|emb|CEG47875.1| (rna-binding protein nob1 [Plasmopara halstedii])

HSP 1 Score: 183.726 bits (465), Expect = 2.499e-52
Identity = 93/182 (51.10%), Postives = 124/182 (68.13%), Query Frame = 0
Query:    8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPR--PGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187
            VAC+TTD++MQNV+LQ+GLRL+S EG  + RVKQW  RC +C     + DRMFCP+CGN+ + R+S S+D   G +  + S+  RP    G KYS+PKP  G+     GDLLLREDQL MGIW Q+ ++  K++ S FG  +   LGV   K ++   IQ GYGR NPN+Q+GRERRGK+K+
Sbjct:  320 VACITTDYSMQNVVLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRMFCPKCGNSTMERMSYSLDR-DGHMTFY-SRANRPTKLSGTKYSLPKPKGGR----NGDLLLREDQLLMGIWGQRQRQHKKIMHSAFGEHVAHDLGVRAEKQSS---IQVGYGRMNPNAQKGRERRGKKKR 492          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|669161758|ref|XP_008616441.1| (hypothetical protein SDRG_12157 [Saprolegnia diclina VS20] >gi|530731856|gb|EQC30098.1| hypothetical protein SDRG_12157 [Saprolegnia diclina VS20])

HSP 1 Score: 182.57 bits (462), Expect = 2.699e-52
Identity = 92/182 (50.55%), Postives = 122/182 (67.03%), Query Frame = 0
Query:    8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187
            V C+TTD++MQNVMLQMGL L+S +G  + RVKQW  +C +C K   + +R FCP CGNA L RV+ S+D  T QL ++ ++  RP    G K+S+P P  G+    +GDLLLREDQL  GIW Q+ K  +K++ S FG  +   LGV V K T+   I  GYGR NPN+Q+GRERRGK+K+
Sbjct:  272 VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELERQFCPVCGNATLERVACSLDKETEQLTLY-TRANRPTKLRGTKFSLPAPKGGR----QGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTS---ITIGYGRMNPNAQKGRERRGKKKR 445          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|695412281|ref|XP_009525700.1| (hypothetical protein PHYSODRAFT_314356 [Phytophthora sojae] >gi|348676825|gb|EGZ16642.1| hypothetical protein PHYSODRAFT_314356 [Phytophthora sojae])

HSP 1 Score: 182.185 bits (461), Expect = 7.752e-52
Identity = 94/185 (50.81%), Postives = 126/185 (68.11%), Query Frame = 0
Query:    5 LPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPR--PGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187
            LP VAC+TTDF+MQNVMLQ+GLRL+S EG  + RVKQW  RC +C     + DR+FCP+CGN+ + RVS S+D   G +  + ++  RP    G K+S+PKP  G+     GDLLLREDQL +GIW Q+ ++  K++ S FG ++   LGV   + T   GI  GYGR NPN+Q+GRERRGK+K+
Sbjct:  319 LP-VACITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMERVSYSLDR-DGHMTFY-TRANRPTKLSGTKFSLPKPKGGR----NGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAERQT---GIVVGYGRMNPNAQKGRERRGKKKR 493          
BLAST of EWM22320.1 vs. NCBI_GenBank
Match: gi|1173956961|gb|OQS03607.1| (RNA-binding protein NOB1 [Thraustotheca clavata])

HSP 1 Score: 180.259 bits (456), Expect = 3.231e-51
Identity = 91/182 (50.00%), Postives = 121/182 (66.48%), Query Frame = 0
Query:    8 VACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRP--GCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187
            V C+TTD++MQNVMLQMGL L+S +G  + RVKQW  +C +C K   +  R FCP CGNA L RV+ S+D  T QL ++ ++  RP    G K+S+P P  G+    +GD+LLREDQL  GIW Q+ K  +K++ S FG  +   LGV V K T+   I  GYGR NPN+Q+GRERRGK+K+
Sbjct:  302 VGCITTDYSMQNVMLQMGLNLLSTDGMVIKRVKQWVLKCAACYKTTTELTRQFCPVCGNATLERVACSLDKDTEQLTLY-TRANRPTKLRGTKFSLPMPKGGR----QGDILLREDQLLHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTS---ITIGYGRMNPNAQKGRERRGKKKR 475          
The following BLAST results are available for this feature:
BLAST of EWM22320.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102817|gb|EWM22320.1|1.965e-138100.00ribosome biogenesis protein nob1 [Nannochloropsis ... [more]
gi|553189550|ref|XP_005855024.1|1.794e-137100.00RNA-binding protein NOB1, partial [Nannochloropsis... [more]
gi|299469760|emb|CBN76614.1|3.869e-5858.24conserved unknown protein [Ectocarpus siliculosus][more]
gi|813192582|ref|XP_012208173.1|7.066e-5350.55hypothetical protein SPRG_13782 [Saprolegnia paras... [more]
gi|1173943253|gb|OQR92134.1|7.113e-5351.10RNA-binding protein NOB1 [Achlya hypogyna][more]
gi|813192630|ref|XP_012208197.1|2.276e-5250.55hypothetical protein SPRG_13811 [Saprolegnia paras... [more]
gi|953488391|emb|CEG47875.1|2.499e-5251.10rna-binding protein nob1 [Plasmopara halstedii][more]
gi|669161758|ref|XP_008616441.1|2.699e-5250.55hypothetical protein SDRG_12157 [Saprolegnia dicli... [more]
gi|695412281|ref|XP_009525700.1|7.752e-5250.81hypothetical protein PHYSODRAFT_314356 [Phytophtho... [more]
gi|1173956961|gb|OQS03607.1|3.231e-5150.00RNA-binding protein NOB1 [Thraustotheca clavata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8368rna8368Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications